Experiment: Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS03875 and DDA3937_RS03880 are separated by 199 nucleotides DDA3937_RS03880 and DDA3937_RS03885 are separated by 2 nucleotides DDA3937_RS03885 and DDA3937_RS03890 are separated by 185 nucleotides
DDA3937_RS03875: DDA3937_RS03875 - DUF736 domain-containing protein, at 862,746 to 863,057
_RS03875
DDA3937_RS03880: DDA3937_RS03880 - type II toxin-antitoxin system CcdA family antitoxin, at 863,257 to 863,496
_RS03880
DDA3937_RS03885: DDA3937_RS03885 - CcdB family protein, at 863,499 to 863,807
_RS03885
DDA3937_RS03890: DDA3937_RS03890 - hypothetical protein, at 863,993 to 864,589
_RS03890
Position (kb) 863
864 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 862.504 kb on + strand at 862.504 kb on + strand at 862.505 kb on - strand at 862.505 kb on - strand at 862.505 kb on - strand at 862.505 kb on - strand at 862.505 kb on - strand at 862.751 kb on + strand at 862.752 kb on - strand at 862.893 kb on + strand, within DDA3937_RS03875 at 862.941 kb on + strand, within DDA3937_RS03875 at 862.942 kb on - strand, within DDA3937_RS03875 at 862.942 kb on - strand, within DDA3937_RS03875 at 862.942 kb on - strand, within DDA3937_RS03875 at 862.942 kb on - strand, within DDA3937_RS03875 at 862.986 kb on + strand, within DDA3937_RS03875 at 862.986 kb on + strand, within DDA3937_RS03875 at 862.986 kb on + strand, within DDA3937_RS03875 at 862.986 kb on + strand, within DDA3937_RS03875 at 862.986 kb on + strand, within DDA3937_RS03875 at 862.986 kb on + strand, within DDA3937_RS03875 at 862.987 kb on - strand, within DDA3937_RS03875 at 862.987 kb on - strand at 862.987 kb on - strand, within DDA3937_RS03875 at 863.019 kb on + strand at 863.019 kb on + strand, within DDA3937_RS03875 at 863.019 kb on + strand, within DDA3937_RS03875 at 863.019 kb on + strand, within DDA3937_RS03875 at 863.019 kb on + strand, within DDA3937_RS03875 at 863.019 kb on + strand, within DDA3937_RS03875 at 863.019 kb on + strand, within DDA3937_RS03875 at 863.020 kb on - strand, within DDA3937_RS03875 at 863.020 kb on - strand, within DDA3937_RS03875 at 863.020 kb on - strand, within DDA3937_RS03875 at 863.020 kb on - strand, within DDA3937_RS03875 at 863.020 kb on - strand, within DDA3937_RS03875 at 863.020 kb on - strand, within DDA3937_RS03875 at 863.020 kb on - strand, within DDA3937_RS03875 at 863.020 kb on - strand, within DDA3937_RS03875 at 863.020 kb on - strand, within DDA3937_RS03875 at 863.151 kb on + strand at 863.152 kb on - strand at 863.176 kb on + strand at 863.176 kb on + strand at 863.177 kb on - strand at 863.177 kb on - strand at 863.177 kb on - strand at 863.178 kb on + strand at 863.179 kb on - strand at 863.179 kb on - strand at 863.214 kb on + strand at 863.215 kb on - strand at 863.215 kb on - strand at 863.230 kb on - strand at 863.230 kb on - strand at 863.235 kb on - strand at 863.242 kb on + strand at 863.242 kb on + strand at 863.273 kb on + strand at 863.274 kb on - strand at 863.274 kb on - strand at 863.274 kb on - strand at 863.344 kb on - strand, within DDA3937_RS03880 at 863.344 kb on - strand, within DDA3937_RS03880 at 863.483 kb on - strand at 863.483 kb on - strand at 863.494 kb on + strand at 863.495 kb on - strand at 863.505 kb on + strand at 863.505 kb on + strand at 863.505 kb on + strand at 863.505 kb on + strand at 863.505 kb on + strand at 863.505 kb on + strand at 863.505 kb on + strand at 863.505 kb on + strand at 863.505 kb on + strand at 863.506 kb on - strand at 863.506 kb on - strand at 863.506 kb on - strand at 863.506 kb on - strand at 863.506 kb on - strand at 863.514 kb on + strand at 863.541 kb on + strand, within DDA3937_RS03885 at 863.541 kb on + strand, within DDA3937_RS03885 at 863.547 kb on + strand, within DDA3937_RS03885 at 863.588 kb on + strand, within DDA3937_RS03885 at 863.588 kb on + strand, within DDA3937_RS03885 at 863.588 kb on + strand, within DDA3937_RS03885 at 863.683 kb on - strand, within DDA3937_RS03885 at 863.683 kb on - strand, within DDA3937_RS03885 at 863.758 kb on - strand, within DDA3937_RS03885 at 863.768 kb on + strand, within DDA3937_RS03885 at 863.794 kb on + strand at 863.795 kb on - strand at 863.886 kb on - strand at 863.905 kb on - strand at 863.970 kb on + strand at 863.975 kb on - strand at 863.987 kb on - strand at 863.987 kb on - strand at 863.988 kb on + strand at 863.988 kb on + strand at 863.991 kb on - strand at 863.991 kb on - strand at 864.121 kb on + strand, within DDA3937_RS03890 at 864.307 kb on + strand, within DDA3937_RS03890 at 864.375 kb on - strand, within DDA3937_RS03890 at 864.389 kb on + strand, within DDA3937_RS03890 at 864.389 kb on + strand, within DDA3937_RS03890 at 864.410 kb on + strand, within DDA3937_RS03890 at 864.411 kb on - strand, within DDA3937_RS03890 at 864.411 kb on - strand, within DDA3937_RS03890 at 864.486 kb on - strand, within DDA3937_RS03890 at 864.488 kb on - strand at 864.518 kb on + strand, within DDA3937_RS03890 at 864.518 kb on + strand, within DDA3937_RS03890 at 864.519 kb on - strand, within DDA3937_RS03890 at 864.547 kb on + strand at 864.548 kb on - strand at 864.635 kb on + strand at 864.636 kb on - strand at 864.680 kb on + strand at 864.718 kb on + strand at 864.718 kb on + strand at 864.719 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Atlantic remove 862,504 + +0.6 862,504 + +1.1 862,505 - +2.7 862,505 - -2.1 862,505 - +5.2 862,505 - -1.5 862,505 - -2.8 862,751 + -0.7 862,752 - -1.2 862,893 + DDA3937_RS03875 0.47 -0.8 862,941 + DDA3937_RS03875 0.62 +0.2 862,942 - DDA3937_RS03875 0.63 +0.6 862,942 - DDA3937_RS03875 0.63 +1.3 862,942 - DDA3937_RS03875 0.63 -1.9 862,942 - DDA3937_RS03875 0.63 -0.5 862,986 + DDA3937_RS03875 0.77 -1.5 862,986 + DDA3937_RS03875 0.77 +0.3 862,986 + DDA3937_RS03875 0.77 -0.2 862,986 + DDA3937_RS03875 0.77 -1.1 862,986 + DDA3937_RS03875 0.77 +0.6 862,986 + DDA3937_RS03875 0.77 -1.0 862,987 - DDA3937_RS03875 0.77 -0.2 862,987 - -0.2 862,987 - DDA3937_RS03875 0.77 -0.2 863,019 + -1.0 863,019 + DDA3937_RS03875 0.88 +0.5 863,019 + DDA3937_RS03875 0.88 -2.0 863,019 + DDA3937_RS03875 0.88 +0.4 863,019 + DDA3937_RS03875 0.88 -1.5 863,019 + DDA3937_RS03875 0.88 +0.3 863,019 + DDA3937_RS03875 0.88 +0.3 863,020 - DDA3937_RS03875 0.88 -0.4 863,020 - DDA3937_RS03875 0.88 +2.0 863,020 - DDA3937_RS03875 0.88 +0.2 863,020 - DDA3937_RS03875 0.88 -1.7 863,020 - DDA3937_RS03875 0.88 -1.3 863,020 - DDA3937_RS03875 0.88 -1.1 863,020 - DDA3937_RS03875 0.88 -0.2 863,020 - DDA3937_RS03875 0.88 +0.2 863,020 - DDA3937_RS03875 0.88 -0.8 863,151 + +0.3 863,152 - -1.2 863,176 + +0.3 863,176 + -1.0 863,177 - +0.4 863,177 - -0.3 863,177 - -0.8 863,178 + +0.5 863,179 - -0.2 863,179 - -0.8 863,214 + -0.4 863,215 - +0.4 863,215 - -0.7 863,230 - -0.3 863,230 - -0.9 863,235 - -0.7 863,242 + +0.1 863,242 + -2.2 863,273 + -0.6 863,274 - -1.0 863,274 - -0.8 863,274 - -1.0 863,344 - DDA3937_RS03880 0.36 +0.0 863,344 - DDA3937_RS03880 0.36 -1.1 863,483 - -1.8 863,483 - +0.0 863,494 + -0.1 863,495 - -2.0 863,505 + +0.8 863,505 + +0.2 863,505 + -1.0 863,505 + -0.4 863,505 + -1.7 863,505 + +0.4 863,505 + -0.2 863,505 + +0.3 863,505 + +0.7 863,506 - -0.3 863,506 - -1.0 863,506 - +0.1 863,506 - +0.5 863,506 - -0.4 863,514 + -1.3 863,541 + DDA3937_RS03885 0.14 -1.5 863,541 + DDA3937_RS03885 0.14 +1.7 863,547 + DDA3937_RS03885 0.16 -0.6 863,588 + DDA3937_RS03885 0.29 +0.6 863,588 + DDA3937_RS03885 0.29 +1.7 863,588 + DDA3937_RS03885 0.29 +1.3 863,683 - DDA3937_RS03885 0.60 +0.0 863,683 - DDA3937_RS03885 0.60 +1.8 863,758 - DDA3937_RS03885 0.84 -0.0 863,768 + DDA3937_RS03885 0.87 +4.1 863,794 + -0.1 863,795 - -0.4 863,886 - -1.2 863,905 - +0.0 863,970 + +0.8 863,975 - +2.6 863,987 - -2.1 863,987 - -1.8 863,988 + -2.1 863,988 + -2.8 863,991 - -0.6 863,991 - -1.0 864,121 + DDA3937_RS03890 0.21 -0.1 864,307 + DDA3937_RS03890 0.53 -0.1 864,375 - DDA3937_RS03890 0.64 -0.3 864,389 + DDA3937_RS03890 0.66 +0.0 864,389 + DDA3937_RS03890 0.66 -0.7 864,410 + DDA3937_RS03890 0.70 +0.3 864,411 - DDA3937_RS03890 0.70 -0.4 864,411 - DDA3937_RS03890 0.70 -0.7 864,486 - DDA3937_RS03890 0.83 -0.3 864,488 - +1.3 864,518 + DDA3937_RS03890 0.88 +2.3 864,518 + DDA3937_RS03890 0.88 -0.5 864,519 - DDA3937_RS03890 0.88 +0.1 864,547 + -0.5 864,548 - -0.4 864,635 + +1.8 864,636 - -0.7 864,680 + -2.7 864,718 + +1.6 864,718 + +2.0 864,719 - +1.6
Or see this region's nucleotide sequence