Experiment: Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS03330 and DDA3937_RS03335 are separated by 10 nucleotides DDA3937_RS03335 and DDA3937_RS03340 are separated by 150 nucleotides DDA3937_RS03340 and DDA3937_RS03345 are separated by 399 nucleotides
DDA3937_RS03330: DDA3937_RS03330 - GMC family oxidoreductase, at 728,009 to 729,604
_RS03330
DDA3937_RS03335: DDA3937_RS03335 - hypothetical protein, at 729,615 to 730,079
_RS03335
DDA3937_RS03340: DDA3937_RS03340 - phosphoesterase, at 730,230 to 731,657
_RS03340
DDA3937_RS03345: DDA3937_RS03345 - helix-turn-helix transcriptional regulator, at 732,057 to 732,812
_RS03345
Position (kb) 730
731
732 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 729.284 kb on - strand, within DDA3937_RS03330 at 729.327 kb on + strand, within DDA3937_RS03330 at 729.327 kb on + strand, within DDA3937_RS03330 at 729.327 kb on + strand, within DDA3937_RS03330 at 729.328 kb on - strand, within DDA3937_RS03330 at 729.328 kb on - strand, within DDA3937_RS03330 at 729.420 kb on + strand, within DDA3937_RS03330 at 729.421 kb on - strand, within DDA3937_RS03330 at 729.421 kb on - strand, within DDA3937_RS03330 at 729.421 kb on - strand, within DDA3937_RS03330 at 729.421 kb on - strand, within DDA3937_RS03330 at 729.433 kb on - strand, within DDA3937_RS03330 at 729.456 kb on + strand at 729.457 kb on - strand at 729.474 kb on + strand at 729.474 kb on + strand at 729.474 kb on + strand at 729.475 kb on - strand at 729.475 kb on - strand at 729.475 kb on - strand at 729.534 kb on + strand at 729.534 kb on + strand at 729.584 kb on - strand at 729.584 kb on - strand at 729.587 kb on + strand at 729.588 kb on - strand at 729.593 kb on - strand at 729.593 kb on - strand at 729.668 kb on - strand, within DDA3937_RS03335 at 729.676 kb on + strand, within DDA3937_RS03335 at 729.677 kb on - strand, within DDA3937_RS03335 at 729.717 kb on + strand, within DDA3937_RS03335 at 729.717 kb on + strand, within DDA3937_RS03335 at 729.759 kb on - strand, within DDA3937_RS03335 at 729.820 kb on + strand, within DDA3937_RS03335 at 729.820 kb on + strand, within DDA3937_RS03335 at 729.821 kb on - strand, within DDA3937_RS03335 at 729.821 kb on - strand, within DDA3937_RS03335 at 729.881 kb on - strand, within DDA3937_RS03335 at 729.881 kb on - strand, within DDA3937_RS03335 at 729.883 kb on + strand, within DDA3937_RS03335 at 729.883 kb on + strand, within DDA3937_RS03335 at 729.884 kb on - strand, within DDA3937_RS03335 at 729.892 kb on + strand, within DDA3937_RS03335 at 729.892 kb on + strand, within DDA3937_RS03335 at 729.893 kb on - strand, within DDA3937_RS03335 at 729.906 kb on - strand, within DDA3937_RS03335 at 729.908 kb on + strand at 729.909 kb on - strand, within DDA3937_RS03335 at 729.931 kb on + strand, within DDA3937_RS03335 at 729.932 kb on - strand, within DDA3937_RS03335 at 729.932 kb on - strand, within DDA3937_RS03335 at 729.932 kb on - strand, within DDA3937_RS03335 at 729.946 kb on + strand, within DDA3937_RS03335 at 729.947 kb on - strand, within DDA3937_RS03335 at 730.019 kb on + strand, within DDA3937_RS03335 at 730.019 kb on + strand, within DDA3937_RS03335 at 730.019 kb on + strand, within DDA3937_RS03335 at 730.020 kb on - strand, within DDA3937_RS03335 at 730.020 kb on - strand, within DDA3937_RS03335 at 730.020 kb on - strand, within DDA3937_RS03335 at 730.020 kb on - strand, within DDA3937_RS03335 at 730.026 kb on - strand, within DDA3937_RS03335 at 730.049 kb on + strand at 730.054 kb on + strand at 730.055 kb on - strand at 730.055 kb on - strand at 730.055 kb on - strand at 730.055 kb on - strand at 730.055 kb on - strand at 730.055 kb on - strand at 730.079 kb on + strand at 730.079 kb on + strand at 730.079 kb on + strand at 730.079 kb on + strand at 730.079 kb on + strand at 730.079 kb on + strand at 730.079 kb on + strand at 730.079 kb on + strand at 730.079 kb on + strand at 730.079 kb on + strand at 730.080 kb on - strand at 730.080 kb on - strand at 730.080 kb on - strand at 730.080 kb on - strand at 730.080 kb on - strand at 730.080 kb on - strand at 730.193 kb on + strand at 730.193 kb on + strand at 730.193 kb on + strand at 730.193 kb on + strand at 730.193 kb on + strand at 730.194 kb on - strand at 730.194 kb on - strand at 730.270 kb on + strand at 730.271 kb on - strand at 730.271 kb on - strand at 730.271 kb on - strand at 730.271 kb on - strand at 730.476 kb on + strand, within DDA3937_RS03340 at 730.476 kb on + strand, within DDA3937_RS03340 at 730.476 kb on + strand, within DDA3937_RS03340 at 730.476 kb on + strand, within DDA3937_RS03340 at 730.476 kb on + strand, within DDA3937_RS03340 at 730.477 kb on - strand, within DDA3937_RS03340 at 730.477 kb on - strand, within DDA3937_RS03340 at 730.477 kb on - strand, within DDA3937_RS03340 at 730.599 kb on + strand, within DDA3937_RS03340 at 730.676 kb on - strand, within DDA3937_RS03340 at 730.753 kb on + strand at 730.753 kb on + strand, within DDA3937_RS03340 at 730.753 kb on + strand, within DDA3937_RS03340 at 730.753 kb on + strand, within DDA3937_RS03340 at 730.754 kb on - strand, within DDA3937_RS03340 at 730.754 kb on - strand, within DDA3937_RS03340 at 730.757 kb on + strand, within DDA3937_RS03340 at 730.757 kb on + strand, within DDA3937_RS03340 at 730.758 kb on - strand, within DDA3937_RS03340 at 730.804 kb on + strand, within DDA3937_RS03340 at 730.804 kb on + strand, within DDA3937_RS03340 at 730.804 kb on + strand, within DDA3937_RS03340 at 730.805 kb on - strand at 730.805 kb on - strand, within DDA3937_RS03340 at 730.805 kb on - strand, within DDA3937_RS03340 at 730.807 kb on + strand, within DDA3937_RS03340 at 730.807 kb on + strand, within DDA3937_RS03340 at 730.807 kb on + strand, within DDA3937_RS03340 at 730.807 kb on + strand, within DDA3937_RS03340 at 730.900 kb on + strand, within DDA3937_RS03340 at 730.901 kb on - strand, within DDA3937_RS03340 at 730.901 kb on - strand, within DDA3937_RS03340 at 730.901 kb on - strand at 730.901 kb on - strand, within DDA3937_RS03340 at 730.901 kb on - strand, within DDA3937_RS03340 at 730.901 kb on - strand, within DDA3937_RS03340 at 730.962 kb on - strand, within DDA3937_RS03340 at 730.962 kb on - strand, within DDA3937_RS03340 at 730.962 kb on - strand, within DDA3937_RS03340 at 731.018 kb on - strand, within DDA3937_RS03340 at 731.018 kb on - strand, within DDA3937_RS03340 at 731.018 kb on - strand, within DDA3937_RS03340 at 731.023 kb on + strand, within DDA3937_RS03340 at 731.023 kb on + strand, within DDA3937_RS03340 at 731.023 kb on + strand, within DDA3937_RS03340 at 731.024 kb on - strand, within DDA3937_RS03340 at 731.024 kb on - strand, within DDA3937_RS03340 at 731.080 kb on + strand, within DDA3937_RS03340 at 731.080 kb on + strand, within DDA3937_RS03340 at 731.080 kb on + strand, within DDA3937_RS03340 at 731.081 kb on - strand, within DDA3937_RS03340 at 731.081 kb on - strand, within DDA3937_RS03340 at 731.081 kb on - strand, within DDA3937_RS03340 at 731.081 kb on - strand, within DDA3937_RS03340 at 731.192 kb on - strand, within DDA3937_RS03340 at 731.235 kb on - strand, within DDA3937_RS03340 at 731.249 kb on + strand, within DDA3937_RS03340 at 731.250 kb on - strand, within DDA3937_RS03340 at 731.250 kb on - strand, within DDA3937_RS03340 at 731.315 kb on - strand, within DDA3937_RS03340 at 731.320 kb on + strand, within DDA3937_RS03340 at 731.321 kb on - strand, within DDA3937_RS03340 at 731.404 kb on + strand, within DDA3937_RS03340 at 731.408 kb on - strand, within DDA3937_RS03340 at 731.408 kb on - strand, within DDA3937_RS03340 at 731.435 kb on + strand, within DDA3937_RS03340 at 731.436 kb on - strand, within DDA3937_RS03340 at 731.440 kb on + strand, within DDA3937_RS03340 at 731.472 kb on + strand, within DDA3937_RS03340 at 731.473 kb on - strand, within DDA3937_RS03340 at 731.586 kb on - strand at 731.625 kb on - strand at 731.652 kb on - strand at 731.764 kb on + strand at 731.764 kb on + strand at 731.765 kb on - strand at 731.765 kb on - strand at 731.765 kb on - strand at 731.797 kb on + strand at 731.797 kb on + strand at 731.798 kb on - strand at 731.798 kb on - strand at 731.845 kb on - strand at 731.853 kb on + strand at 732.022 kb on + strand at 732.066 kb on + strand at 732.071 kb on + strand at 732.071 kb on + strand at 732.071 kb on + strand at 732.072 kb on - strand at 732.072 kb on - strand at 732.225 kb on + strand, within DDA3937_RS03345 at 732.225 kb on + strand, within DDA3937_RS03345 at 732.226 kb on - strand, within DDA3937_RS03345 at 732.226 kb on - strand, within DDA3937_RS03345 at 732.226 kb on - strand, within DDA3937_RS03345 at 732.226 kb on - strand, within DDA3937_RS03345 at 732.227 kb on + strand, within DDA3937_RS03345 at 732.228 kb on - strand, within DDA3937_RS03345 at 732.288 kb on + strand, within DDA3937_RS03345 at 732.289 kb on - strand, within DDA3937_RS03345 at 732.289 kb on - strand, within DDA3937_RS03345 at 732.289 kb on - strand, within DDA3937_RS03345 at 732.289 kb on - strand, within DDA3937_RS03345 at 732.315 kb on + strand, within DDA3937_RS03345 at 732.516 kb on - strand, within DDA3937_RS03345 at 732.615 kb on - strand, within DDA3937_RS03345 at 732.629 kb on + strand, within DDA3937_RS03345 at 732.629 kb on + strand, within DDA3937_RS03345 at 732.629 kb on + strand, within DDA3937_RS03345 at 732.630 kb on - strand, within DDA3937_RS03345
Per-strain Table
Position Strand Gene LocusTag Fraction Atlantic remove 729,284 - DDA3937_RS03330 0.80 -0.3 729,327 + DDA3937_RS03330 0.83 -0.7 729,327 + DDA3937_RS03330 0.83 +1.0 729,327 + DDA3937_RS03330 0.83 -0.1 729,328 - DDA3937_RS03330 0.83 +0.2 729,328 - DDA3937_RS03330 0.83 -0.4 729,420 + DDA3937_RS03330 0.88 -0.6 729,421 - DDA3937_RS03330 0.88 -0.2 729,421 - DDA3937_RS03330 0.88 -0.5 729,421 - DDA3937_RS03330 0.88 +0.6 729,421 - DDA3937_RS03330 0.88 +0.8 729,433 - DDA3937_RS03330 0.89 +0.6 729,456 + +1.6 729,457 - +1.0 729,474 + -0.2 729,474 + +0.2 729,474 + -0.9 729,475 - +0.9 729,475 - +0.7 729,475 - +1.4 729,534 + +1.0 729,534 + -1.8 729,584 - +2.3 729,584 - -0.5 729,587 + -0.0 729,588 - -0.2 729,593 - +1.0 729,593 - +4.8 729,668 - DDA3937_RS03335 0.11 +0.0 729,676 + DDA3937_RS03335 0.13 +1.2 729,677 - DDA3937_RS03335 0.13 -0.9 729,717 + DDA3937_RS03335 0.22 -0.3 729,717 + DDA3937_RS03335 0.22 -0.8 729,759 - DDA3937_RS03335 0.31 +0.2 729,820 + DDA3937_RS03335 0.44 +0.8 729,820 + DDA3937_RS03335 0.44 +0.2 729,821 - DDA3937_RS03335 0.44 -0.8 729,821 - DDA3937_RS03335 0.44 +0.2 729,881 - DDA3937_RS03335 0.57 -0.8 729,881 - DDA3937_RS03335 0.57 -0.1 729,883 + DDA3937_RS03335 0.58 -0.7 729,883 + DDA3937_RS03335 0.58 +1.2 729,884 - DDA3937_RS03335 0.58 +0.1 729,892 + DDA3937_RS03335 0.60 -0.3 729,892 + DDA3937_RS03335 0.60 -0.2 729,893 - DDA3937_RS03335 0.60 +0.1 729,906 - DDA3937_RS03335 0.63 +2.5 729,908 + -0.6 729,909 - DDA3937_RS03335 0.63 -0.2 729,931 + DDA3937_RS03335 0.68 -1.9 729,932 - DDA3937_RS03335 0.68 -0.4 729,932 - DDA3937_RS03335 0.68 -0.2 729,932 - DDA3937_RS03335 0.68 -1.5 729,946 + DDA3937_RS03335 0.71 -1.2 729,947 - DDA3937_RS03335 0.71 -0.3 730,019 + DDA3937_RS03335 0.87 -1.2 730,019 + DDA3937_RS03335 0.87 -0.9 730,019 + DDA3937_RS03335 0.87 -1.5 730,020 - DDA3937_RS03335 0.87 -0.4 730,020 - DDA3937_RS03335 0.87 -0.2 730,020 - DDA3937_RS03335 0.87 +0.3 730,020 - DDA3937_RS03335 0.87 -0.2 730,026 - DDA3937_RS03335 0.88 -0.4 730,049 + +1.6 730,054 + -0.1 730,055 - +0.4 730,055 - -1.9 730,055 - -1.5 730,055 - +0.6 730,055 - -0.6 730,055 - +0.8 730,079 + -0.6 730,079 + +0.6 730,079 + -0.2 730,079 + +1.2 730,079 + -0.3 730,079 + -0.2 730,079 + -1.5 730,079 + -1.6 730,079 + +1.1 730,079 + -0.4 730,080 - +0.0 730,080 - -0.6 730,080 - -1.2 730,080 - +0.7 730,080 - -0.6 730,080 - -0.4 730,193 + -0.1 730,193 + -0.5 730,193 + -0.0 730,193 + -1.0 730,193 + +0.8 730,194 - -1.6 730,194 - -0.6 730,270 + -1.7 730,271 - -1.0 730,271 - -1.1 730,271 - +0.9 730,271 - -0.0 730,476 + DDA3937_RS03340 0.17 +0.9 730,476 + DDA3937_RS03340 0.17 -0.1 730,476 + DDA3937_RS03340 0.17 +2.1 730,476 + DDA3937_RS03340 0.17 -0.3 730,476 + DDA3937_RS03340 0.17 -0.6 730,477 - DDA3937_RS03340 0.17 -0.3 730,477 - DDA3937_RS03340 0.17 +0.4 730,477 - DDA3937_RS03340 0.17 +1.8 730,599 + DDA3937_RS03340 0.26 +0.6 730,676 - DDA3937_RS03340 0.31 +0.2 730,753 + +2.4 730,753 + DDA3937_RS03340 0.37 -1.2 730,753 + DDA3937_RS03340 0.37 -0.7 730,753 + DDA3937_RS03340 0.37 -0.0 730,754 - DDA3937_RS03340 0.37 +1.6 730,754 - DDA3937_RS03340 0.37 -0.8 730,757 + DDA3937_RS03340 0.37 -2.1 730,757 + DDA3937_RS03340 0.37 -1.0 730,758 - DDA3937_RS03340 0.37 +0.3 730,804 + DDA3937_RS03340 0.40 -1.0 730,804 + DDA3937_RS03340 0.40 +0.5 730,804 + DDA3937_RS03340 0.40 -0.9 730,805 - -0.6 730,805 - DDA3937_RS03340 0.40 +0.4 730,805 - DDA3937_RS03340 0.40 +0.2 730,807 + DDA3937_RS03340 0.40 +0.9 730,807 + DDA3937_RS03340 0.40 -2.1 730,807 + DDA3937_RS03340 0.40 -2.1 730,807 + DDA3937_RS03340 0.40 +0.4 730,900 + DDA3937_RS03340 0.47 -0.9 730,901 - DDA3937_RS03340 0.47 -1.9 730,901 - DDA3937_RS03340 0.47 -1.2 730,901 - +2.6 730,901 - DDA3937_RS03340 0.47 +1.3 730,901 - DDA3937_RS03340 0.47 -0.3 730,901 - DDA3937_RS03340 0.47 -0.9 730,962 - DDA3937_RS03340 0.51 -0.1 730,962 - DDA3937_RS03340 0.51 +1.0 730,962 - DDA3937_RS03340 0.51 +1.5 731,018 - DDA3937_RS03340 0.55 +0.2 731,018 - DDA3937_RS03340 0.55 +1.1 731,018 - DDA3937_RS03340 0.55 -1.2 731,023 + DDA3937_RS03340 0.56 -0.3 731,023 + DDA3937_RS03340 0.56 +0.3 731,023 + DDA3937_RS03340 0.56 +1.4 731,024 - DDA3937_RS03340 0.56 -0.3 731,024 - DDA3937_RS03340 0.56 -0.9 731,080 + DDA3937_RS03340 0.60 +0.5 731,080 + DDA3937_RS03340 0.60 +1.7 731,080 + DDA3937_RS03340 0.60 -0.9 731,081 - DDA3937_RS03340 0.60 -2.4 731,081 - DDA3937_RS03340 0.60 -0.1 731,081 - DDA3937_RS03340 0.60 +0.6 731,081 - DDA3937_RS03340 0.60 -0.1 731,192 - DDA3937_RS03340 0.67 +0.1 731,235 - DDA3937_RS03340 0.70 -0.1 731,249 + DDA3937_RS03340 0.71 -0.4 731,250 - DDA3937_RS03340 0.71 -1.0 731,250 - DDA3937_RS03340 0.71 +1.7 731,315 - DDA3937_RS03340 0.76 -1.1 731,320 + DDA3937_RS03340 0.76 -0.7 731,321 - DDA3937_RS03340 0.76 -0.2 731,404 + DDA3937_RS03340 0.82 -0.0 731,408 - DDA3937_RS03340 0.82 +0.2 731,408 - DDA3937_RS03340 0.82 -0.4 731,435 + DDA3937_RS03340 0.84 -0.3 731,436 - DDA3937_RS03340 0.84 -1.0 731,440 + DDA3937_RS03340 0.85 -1.2 731,472 + DDA3937_RS03340 0.87 +0.3 731,473 - DDA3937_RS03340 0.87 +1.3 731,586 - -1.0 731,625 - -1.2 731,652 - -0.1 731,764 + -1.2 731,764 + +0.2 731,765 - +0.2 731,765 - +1.5 731,765 - +0.6 731,797 + -2.1 731,797 + -0.5 731,798 - -1.1 731,798 - -1.4 731,845 - +0.9 731,853 + -0.2 732,022 + -1.9 732,066 + -0.1 732,071 + +1.7 732,071 + +2.1 732,071 + +0.7 732,072 - +0.4 732,072 - +0.1 732,225 + DDA3937_RS03345 0.22 -0.5 732,225 + DDA3937_RS03345 0.22 -2.1 732,226 - DDA3937_RS03345 0.22 -0.5 732,226 - DDA3937_RS03345 0.22 +0.4 732,226 - DDA3937_RS03345 0.22 +0.1 732,226 - DDA3937_RS03345 0.22 +1.0 732,227 + DDA3937_RS03345 0.22 +0.8 732,228 - DDA3937_RS03345 0.23 -0.4 732,288 + DDA3937_RS03345 0.31 -0.2 732,289 - DDA3937_RS03345 0.31 +1.2 732,289 - DDA3937_RS03345 0.31 +2.6 732,289 - DDA3937_RS03345 0.31 -0.8 732,289 - DDA3937_RS03345 0.31 -1.3 732,315 + DDA3937_RS03345 0.34 +0.6 732,516 - DDA3937_RS03345 0.61 -1.0 732,615 - DDA3937_RS03345 0.74 +1.3 732,629 + DDA3937_RS03345 0.76 -1.3 732,629 + DDA3937_RS03345 0.76 -0.3 732,629 + DDA3937_RS03345 0.76 +1.1 732,630 - DDA3937_RS03345 0.76 -1.1
Or see this region's nucleotide sequence