Experiment: Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS02850 and DDA3937_RS02855 are separated by 93 nucleotides DDA3937_RS02855 and DDA3937_RS02860 are separated by 308 nucleotides
DDA3937_RS02850: DDA3937_RS02850 - 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG, at 628,664 to 629,836
_RS02850
DDA3937_RS02855: DDA3937_RS02855 - hypothetical protein, at 629,930 to 630,226
_RS02855
DDA3937_RS02860: DDA3937_RS02860 - pectate lyase, at 630,535 to 631,482
_RS02860
Position (kb) 629
630
631 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 629.111 kb on - strand, within DDA3937_RS02850 at 629.111 kb on - strand, within DDA3937_RS02850 at 629.111 kb on - strand, within DDA3937_RS02850 at 629.111 kb on - strand, within DDA3937_RS02850 at 629.155 kb on + strand, within DDA3937_RS02850 at 629.297 kb on + strand, within DDA3937_RS02850 at 629.297 kb on + strand, within DDA3937_RS02850 at 629.297 kb on + strand, within DDA3937_RS02850 at 629.298 kb on - strand, within DDA3937_RS02850 at 629.298 kb on - strand, within DDA3937_RS02850 at 629.312 kb on + strand, within DDA3937_RS02850 at 629.312 kb on + strand, within DDA3937_RS02850 at 629.313 kb on - strand, within DDA3937_RS02850 at 629.313 kb on - strand, within DDA3937_RS02850 at 629.313 kb on - strand, within DDA3937_RS02850 at 629.313 kb on - strand, within DDA3937_RS02850 at 629.462 kb on + strand, within DDA3937_RS02850 at 629.462 kb on + strand, within DDA3937_RS02850 at 629.463 kb on - strand, within DDA3937_RS02850 at 629.486 kb on + strand, within DDA3937_RS02850 at 629.486 kb on + strand, within DDA3937_RS02850 at 629.486 kb on + strand, within DDA3937_RS02850 at 629.486 kb on + strand, within DDA3937_RS02850 at 629.486 kb on + strand, within DDA3937_RS02850 at 629.486 kb on + strand, within DDA3937_RS02850 at 629.486 kb on + strand, within DDA3937_RS02850 at 629.486 kb on + strand, within DDA3937_RS02850 at 629.487 kb on - strand, within DDA3937_RS02850 at 629.487 kb on - strand, within DDA3937_RS02850 at 629.487 kb on - strand, within DDA3937_RS02850 at 629.487 kb on - strand, within DDA3937_RS02850 at 629.487 kb on - strand, within DDA3937_RS02850 at 629.487 kb on - strand, within DDA3937_RS02850 at 629.487 kb on - strand, within DDA3937_RS02850 at 629.487 kb on - strand, within DDA3937_RS02850 at 629.489 kb on - strand, within DDA3937_RS02850 at 629.489 kb on - strand, within DDA3937_RS02850 at 629.738 kb on + strand at 629.817 kb on + strand at 629.881 kb on + strand at 629.881 kb on + strand at 629.881 kb on + strand at 629.882 kb on - strand at 629.882 kb on - strand at 629.882 kb on - strand at 629.882 kb on - strand at 629.909 kb on + strand at 629.909 kb on + strand at 629.910 kb on - strand at 629.929 kb on + strand at 629.929 kb on + strand at 629.930 kb on - strand at 629.930 kb on - strand at 629.930 kb on - strand at 629.930 kb on - strand at 629.930 kb on - strand at 629.958 kb on + strand at 630.024 kb on - strand, within DDA3937_RS02855 at 630.140 kb on - strand, within DDA3937_RS02855 at 630.210 kb on - strand at 630.247 kb on - strand at 630.264 kb on - strand at 630.432 kb on - strand at 630.454 kb on - strand at 630.515 kb on - strand at 630.531 kb on + strand at 630.532 kb on - strand at 630.542 kb on - strand at 630.624 kb on + strand at 630.624 kb on + strand at 630.628 kb on - strand at 630.628 kb on - strand at 630.628 kb on - strand at 630.628 kb on - strand at 630.697 kb on - strand, within DDA3937_RS02860 at 630.777 kb on + strand, within DDA3937_RS02860 at 630.778 kb on - strand, within DDA3937_RS02860 at 630.843 kb on + strand, within DDA3937_RS02860 at 630.881 kb on - strand, within DDA3937_RS02860 at 630.937 kb on + strand, within DDA3937_RS02860 at 630.938 kb on - strand, within DDA3937_RS02860 at 630.939 kb on + strand, within DDA3937_RS02860 at 630.939 kb on + strand, within DDA3937_RS02860 at 630.973 kb on + strand, within DDA3937_RS02860 at 630.973 kb on + strand, within DDA3937_RS02860 at 630.974 kb on - strand, within DDA3937_RS02860 at 630.976 kb on - strand, within DDA3937_RS02860 at 630.994 kb on + strand, within DDA3937_RS02860 at 630.995 kb on - strand, within DDA3937_RS02860 at 631.034 kb on - strand, within DDA3937_RS02860 at 631.034 kb on - strand, within DDA3937_RS02860 at 631.072 kb on - strand, within DDA3937_RS02860 at 631.084 kb on + strand, within DDA3937_RS02860 at 631.084 kb on + strand, within DDA3937_RS02860 at 631.084 kb on + strand, within DDA3937_RS02860 at 631.085 kb on - strand, within DDA3937_RS02860 at 631.108 kb on - strand, within DDA3937_RS02860 at 631.120 kb on + strand, within DDA3937_RS02860 at 631.120 kb on + strand, within DDA3937_RS02860 at 631.121 kb on - strand, within DDA3937_RS02860 at 631.121 kb on - strand, within DDA3937_RS02860 at 631.131 kb on + strand, within DDA3937_RS02860 at 631.131 kb on + strand, within DDA3937_RS02860 at 631.135 kb on + strand, within DDA3937_RS02860 at 631.168 kb on + strand, within DDA3937_RS02860 at 631.169 kb on - strand, within DDA3937_RS02860 at 631.169 kb on - strand, within DDA3937_RS02860 at 631.180 kb on + strand, within DDA3937_RS02860 at 631.180 kb on + strand, within DDA3937_RS02860 at 631.180 kb on + strand, within DDA3937_RS02860 at 631.180 kb on + strand, within DDA3937_RS02860 at 631.181 kb on - strand, within DDA3937_RS02860 at 631.181 kb on - strand, within DDA3937_RS02860 at 631.181 kb on - strand, within DDA3937_RS02860 at 631.181 kb on - strand, within DDA3937_RS02860 at 631.201 kb on + strand, within DDA3937_RS02860 at 631.202 kb on - strand, within DDA3937_RS02860 at 631.202 kb on - strand, within DDA3937_RS02860 at 631.215 kb on + strand, within DDA3937_RS02860 at 631.216 kb on - strand, within DDA3937_RS02860
Per-strain Table
Position Strand Gene LocusTag Fraction Atlantic remove 629,111 - DDA3937_RS02850 0.38 -0.6 629,111 - DDA3937_RS02850 0.38 -0.2 629,111 - DDA3937_RS02850 0.38 -0.6 629,111 - DDA3937_RS02850 0.38 +0.2 629,155 + DDA3937_RS02850 0.42 -0.2 629,297 + DDA3937_RS02850 0.54 -0.8 629,297 + DDA3937_RS02850 0.54 +0.2 629,297 + DDA3937_RS02850 0.54 -0.6 629,298 - DDA3937_RS02850 0.54 +0.3 629,298 - DDA3937_RS02850 0.54 +1.3 629,312 + DDA3937_RS02850 0.55 +0.2 629,312 + DDA3937_RS02850 0.55 -0.4 629,313 - DDA3937_RS02850 0.55 -0.7 629,313 - DDA3937_RS02850 0.55 -0.5 629,313 - DDA3937_RS02850 0.55 -1.4 629,313 - DDA3937_RS02850 0.55 -1.5 629,462 + DDA3937_RS02850 0.68 -0.7 629,462 + DDA3937_RS02850 0.68 +1.2 629,463 - DDA3937_RS02850 0.68 +1.7 629,486 + DDA3937_RS02850 0.70 -2.0 629,486 + DDA3937_RS02850 0.70 +0.4 629,486 + DDA3937_RS02850 0.70 +1.3 629,486 + DDA3937_RS02850 0.70 +0.7 629,486 + DDA3937_RS02850 0.70 -1.0 629,486 + DDA3937_RS02850 0.70 -0.6 629,486 + DDA3937_RS02850 0.70 -0.2 629,486 + DDA3937_RS02850 0.70 -2.0 629,487 - DDA3937_RS02850 0.70 -0.6 629,487 - DDA3937_RS02850 0.70 -0.3 629,487 - DDA3937_RS02850 0.70 +0.3 629,487 - DDA3937_RS02850 0.70 -1.6 629,487 - DDA3937_RS02850 0.70 -1.2 629,487 - DDA3937_RS02850 0.70 -1.6 629,487 - DDA3937_RS02850 0.70 +1.8 629,487 - DDA3937_RS02850 0.70 +0.1 629,489 - DDA3937_RS02850 0.70 -1.1 629,489 - DDA3937_RS02850 0.70 +0.8 629,738 + -0.2 629,817 + -2.4 629,881 + -2.0 629,881 + +2.0 629,881 + -0.6 629,882 - +0.0 629,882 - -1.1 629,882 - +0.0 629,882 - +2.4 629,909 + -0.6 629,909 + -0.9 629,910 - -1.2 629,929 + -0.1 629,929 + +0.0 629,930 - -1.5 629,930 - +0.0 629,930 - +2.2 629,930 - +1.2 629,930 - -1.6 629,958 + -0.1 630,024 - DDA3937_RS02855 0.32 -1.4 630,140 - DDA3937_RS02855 0.71 -0.7 630,210 - -0.7 630,247 - +0.4 630,264 - +1.1 630,432 - +1.3 630,454 - +0.7 630,515 - -2.0 630,531 + -1.0 630,532 - +1.4 630,542 - -1.6 630,624 + +1.0 630,624 + -1.2 630,628 - +0.7 630,628 - -0.7 630,628 - +0.7 630,628 - -0.5 630,697 - DDA3937_RS02860 0.17 -0.3 630,777 + DDA3937_RS02860 0.26 -0.7 630,778 - DDA3937_RS02860 0.26 -1.4 630,843 + DDA3937_RS02860 0.32 -0.3 630,881 - DDA3937_RS02860 0.36 -1.4 630,937 + DDA3937_RS02860 0.42 -0.7 630,938 - DDA3937_RS02860 0.43 +2.4 630,939 + DDA3937_RS02860 0.43 -1.2 630,939 + DDA3937_RS02860 0.43 -0.9 630,973 + DDA3937_RS02860 0.46 +0.7 630,973 + DDA3937_RS02860 0.46 +0.2 630,974 - DDA3937_RS02860 0.46 -1.7 630,976 - DDA3937_RS02860 0.47 +0.2 630,994 + DDA3937_RS02860 0.48 -0.3 630,995 - DDA3937_RS02860 0.49 +0.1 631,034 - DDA3937_RS02860 0.53 -0.6 631,034 - DDA3937_RS02860 0.53 -0.4 631,072 - DDA3937_RS02860 0.57 -1.7 631,084 + DDA3937_RS02860 0.58 -0.7 631,084 + DDA3937_RS02860 0.58 -0.3 631,084 + DDA3937_RS02860 0.58 -0.3 631,085 - DDA3937_RS02860 0.58 -0.3 631,108 - DDA3937_RS02860 0.60 -1.5 631,120 + DDA3937_RS02860 0.62 +0.3 631,120 + DDA3937_RS02860 0.62 -0.2 631,121 - DDA3937_RS02860 0.62 -2.5 631,121 - DDA3937_RS02860 0.62 +1.0 631,131 + DDA3937_RS02860 0.63 +0.4 631,131 + DDA3937_RS02860 0.63 +0.2 631,135 + DDA3937_RS02860 0.63 +0.2 631,168 + DDA3937_RS02860 0.67 +0.4 631,169 - DDA3937_RS02860 0.67 +1.4 631,169 - DDA3937_RS02860 0.67 +0.3 631,180 + DDA3937_RS02860 0.68 -0.8 631,180 + DDA3937_RS02860 0.68 -0.2 631,180 + DDA3937_RS02860 0.68 +3.1 631,180 + DDA3937_RS02860 0.68 +0.4 631,181 - DDA3937_RS02860 0.68 -0.6 631,181 - DDA3937_RS02860 0.68 -0.7 631,181 - DDA3937_RS02860 0.68 -0.7 631,181 - DDA3937_RS02860 0.68 +2.0 631,201 + DDA3937_RS02860 0.70 -0.5 631,202 - DDA3937_RS02860 0.70 -0.1 631,202 - DDA3937_RS02860 0.70 -0.4 631,215 + DDA3937_RS02860 0.72 +0.8 631,216 - DDA3937_RS02860 0.72 -0.4
Or see this region's nucleotide sequence