Experiment: Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS02815 and DDA3937_RS02820 are separated by 368 nucleotides DDA3937_RS02820 and DDA3937_RS02825 are separated by 514 nucleotides
DDA3937_RS02815: DDA3937_RS02815 - transcriptional regulator ExuR, at 618,904 to 619,683
_RS02815
DDA3937_RS02820: DDA3937_RS02820 - MFS transporter, at 620,052 to 621,350
_RS02820
DDA3937_RS02825: DDA3937_RS02825 - glucuronate isomerase, at 621,865 to 623,283
_RS02825
Position (kb) 620
621
622 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 619.134 kb on + strand, within DDA3937_RS02815 at 619.134 kb on + strand, within DDA3937_RS02815 at 619.135 kb on - strand, within DDA3937_RS02815 at 619.369 kb on + strand at 619.502 kb on + strand, within DDA3937_RS02815 at 619.572 kb on + strand, within DDA3937_RS02815 at 619.573 kb on - strand, within DDA3937_RS02815 at 619.696 kb on + strand at 619.697 kb on - strand at 619.697 kb on - strand at 619.697 kb on - strand at 619.697 kb on - strand at 619.701 kb on + strand at 619.748 kb on - strand at 619.766 kb on + strand at 619.766 kb on + strand at 619.766 kb on + strand at 619.766 kb on + strand at 619.766 kb on + strand at 619.767 kb on - strand at 619.767 kb on - strand at 619.767 kb on - strand at 619.777 kb on + strand at 619.778 kb on - strand at 619.778 kb on - strand at 619.825 kb on - strand at 619.883 kb on + strand at 619.891 kb on + strand at 619.892 kb on - strand at 619.892 kb on - strand at 619.893 kb on + strand at 619.893 kb on + strand at 619.893 kb on + strand at 619.894 kb on - strand at 619.894 kb on - strand at 619.894 kb on - strand at 619.928 kb on + strand at 619.928 kb on + strand at 619.929 kb on - strand at 619.962 kb on + strand at 619.962 kb on + strand at 619.962 kb on + strand at 619.962 kb on + strand at 619.962 kb on + strand at 619.963 kb on - strand at 619.975 kb on - strand at 620.053 kb on + strand at 620.053 kb on + strand at 620.053 kb on + strand at 620.053 kb on + strand at 620.087 kb on + strand at 620.087 kb on + strand at 620.087 kb on + strand at 620.087 kb on + strand at 620.087 kb on + strand at 620.087 kb on + strand at 620.087 kb on + strand at 620.119 kb on - strand at 620.155 kb on - strand at 620.156 kb on + strand at 620.157 kb on - strand at 620.157 kb on - strand at 620.181 kb on - strand at 620.229 kb on - strand, within DDA3937_RS02820 at 620.310 kb on - strand, within DDA3937_RS02820 at 620.373 kb on - strand, within DDA3937_RS02820 at 620.374 kb on + strand, within DDA3937_RS02820 at 620.374 kb on + strand, within DDA3937_RS02820 at 620.374 kb on + strand, within DDA3937_RS02820 at 620.473 kb on + strand, within DDA3937_RS02820 at 620.474 kb on - strand, within DDA3937_RS02820 at 620.474 kb on - strand, within DDA3937_RS02820 at 620.497 kb on + strand, within DDA3937_RS02820 at 620.497 kb on + strand, within DDA3937_RS02820 at 620.498 kb on - strand, within DDA3937_RS02820 at 620.510 kb on + strand, within DDA3937_RS02820 at 620.511 kb on - strand, within DDA3937_RS02820 at 620.618 kb on + strand, within DDA3937_RS02820 at 620.749 kb on + strand, within DDA3937_RS02820 at 620.750 kb on - strand, within DDA3937_RS02820 at 620.750 kb on - strand, within DDA3937_RS02820 at 620.750 kb on - strand, within DDA3937_RS02820 at 620.750 kb on - strand, within DDA3937_RS02820 at 620.796 kb on - strand at 620.797 kb on + strand, within DDA3937_RS02820 at 620.828 kb on + strand, within DDA3937_RS02820 at 620.829 kb on - strand at 620.829 kb on - strand, within DDA3937_RS02820 at 620.829 kb on - strand, within DDA3937_RS02820 at 620.939 kb on - strand, within DDA3937_RS02820 at 621.118 kb on + strand, within DDA3937_RS02820 at 621.119 kb on - strand, within DDA3937_RS02820 at 621.152 kb on - strand, within DDA3937_RS02820 at 621.152 kb on - strand, within DDA3937_RS02820 at 621.152 kb on - strand, within DDA3937_RS02820 at 621.170 kb on + strand, within DDA3937_RS02820 at 621.170 kb on + strand, within DDA3937_RS02820 at 621.170 kb on + strand, within DDA3937_RS02820 at 621.178 kb on + strand, within DDA3937_RS02820 at 621.178 kb on + strand, within DDA3937_RS02820 at 621.178 kb on + strand, within DDA3937_RS02820 at 621.179 kb on - strand, within DDA3937_RS02820 at 621.190 kb on + strand, within DDA3937_RS02820 at 621.203 kb on + strand, within DDA3937_RS02820 at 621.203 kb on + strand, within DDA3937_RS02820 at 621.204 kb on - strand, within DDA3937_RS02820 at 621.204 kb on - strand, within DDA3937_RS02820 at 621.205 kb on + strand, within DDA3937_RS02820 at 621.205 kb on + strand, within DDA3937_RS02820 at 621.205 kb on + strand, within DDA3937_RS02820 at 621.205 kb on + strand, within DDA3937_RS02820 at 621.205 kb on + strand, within DDA3937_RS02820 at 621.205 kb on + strand, within DDA3937_RS02820 at 621.205 kb on + strand, within DDA3937_RS02820 at 621.205 kb on + strand, within DDA3937_RS02820 at 621.205 kb on + strand, within DDA3937_RS02820 at 621.205 kb on + strand, within DDA3937_RS02820 at 621.205 kb on + strand, within DDA3937_RS02820 at 621.205 kb on + strand, within DDA3937_RS02820 at 621.206 kb on - strand, within DDA3937_RS02820 at 621.206 kb on - strand, within DDA3937_RS02820 at 621.206 kb on - strand, within DDA3937_RS02820 at 621.206 kb on - strand, within DDA3937_RS02820 at 621.206 kb on - strand, within DDA3937_RS02820 at 621.206 kb on - strand, within DDA3937_RS02820 at 621.206 kb on - strand, within DDA3937_RS02820 at 621.206 kb on - strand, within DDA3937_RS02820 at 621.206 kb on - strand, within DDA3937_RS02820 at 621.206 kb on - strand, within DDA3937_RS02820 at 621.206 kb on - strand, within DDA3937_RS02820 at 621.206 kb on - strand, within DDA3937_RS02820 at 621.206 kb on - strand, within DDA3937_RS02820 at 621.206 kb on - strand, within DDA3937_RS02820 at 621.206 kb on - strand at 621.211 kb on + strand, within DDA3937_RS02820 at 621.211 kb on + strand, within DDA3937_RS02820 at 621.211 kb on + strand, within DDA3937_RS02820 at 621.211 kb on + strand, within DDA3937_RS02820 at 621.211 kb on + strand, within DDA3937_RS02820 at 621.212 kb on - strand, within DDA3937_RS02820 at 621.212 kb on - strand, within DDA3937_RS02820 at 621.212 kb on - strand, within DDA3937_RS02820 at 621.212 kb on - strand, within DDA3937_RS02820 at 621.212 kb on - strand, within DDA3937_RS02820 at 621.228 kb on - strand at 621.284 kb on - strand at 621.323 kb on - strand at 621.376 kb on - strand at 621.410 kb on - strand at 621.415 kb on + strand at 621.415 kb on + strand at 621.416 kb on - strand at 621.416 kb on - strand at 621.559 kb on + strand at 621.560 kb on - strand at 621.609 kb on + strand at 621.615 kb on - strand at 621.660 kb on + strand at 621.675 kb on + strand at 621.676 kb on - strand at 621.680 kb on + strand at 621.681 kb on - strand at 621.704 kb on + strand at 621.704 kb on + strand at 621.704 kb on + strand at 621.704 kb on + strand at 621.704 kb on + strand at 621.705 kb on - strand at 621.705 kb on - strand at 621.705 kb on - strand at 621.748 kb on + strand at 621.748 kb on + strand at 621.749 kb on - strand at 621.848 kb on - strand at 621.848 kb on - strand at 621.923 kb on - strand at 621.959 kb on - strand at 622.089 kb on + strand, within DDA3937_RS02825 at 622.146 kb on + strand, within DDA3937_RS02825 at 622.147 kb on - strand, within DDA3937_RS02825 at 622.165 kb on + strand, within DDA3937_RS02825 at 622.237 kb on - strand, within DDA3937_RS02825
Per-strain Table
Position Strand Gene LocusTag Fraction Atlantic remove 619,134 + DDA3937_RS02815 0.29 -0.4 619,134 + DDA3937_RS02815 0.29 -1.3 619,135 - DDA3937_RS02815 0.30 +0.3 619,369 + -0.2 619,502 + DDA3937_RS02815 0.77 -1.3 619,572 + DDA3937_RS02815 0.86 +0.4 619,573 - DDA3937_RS02815 0.86 -3.1 619,696 + +2.0 619,697 - -3.4 619,697 - +0.4 619,697 - +0.9 619,697 - -0.3 619,701 + -0.3 619,748 - -0.5 619,766 + +3.1 619,766 + +0.2 619,766 + -0.0 619,766 + +0.0 619,766 + -0.6 619,767 - -0.6 619,767 - -0.6 619,767 - +0.4 619,777 + -1.0 619,778 - +0.1 619,778 - -1.4 619,825 - +0.8 619,883 + -0.8 619,891 + -0.4 619,892 - +0.4 619,892 - -0.3 619,893 + +0.8 619,893 + -2.2 619,893 + +1.4 619,894 - -0.2 619,894 - -0.2 619,894 - +0.1 619,928 + -1.7 619,928 + -0.5 619,929 - -0.2 619,962 + -0.1 619,962 + -2.9 619,962 + +0.2 619,962 + -0.0 619,962 + -0.1 619,963 - -1.9 619,975 - +0.8 620,053 + -1.2 620,053 + +0.5 620,053 + -0.7 620,053 + +0.1 620,087 + +0.4 620,087 + -0.6 620,087 + -0.9 620,087 + +0.4 620,087 + -0.5 620,087 + -0.9 620,087 + +0.5 620,119 - +0.2 620,155 - -0.2 620,156 + -1.4 620,157 - -0.2 620,157 - -0.3 620,181 - +0.6 620,229 - DDA3937_RS02820 0.14 +5.7 620,310 - DDA3937_RS02820 0.20 -0.6 620,373 - DDA3937_RS02820 0.25 -0.0 620,374 + DDA3937_RS02820 0.25 +0.2 620,374 + DDA3937_RS02820 0.25 -2.0 620,374 + DDA3937_RS02820 0.25 +0.6 620,473 + DDA3937_RS02820 0.32 +1.6 620,474 - DDA3937_RS02820 0.32 +3.5 620,474 - DDA3937_RS02820 0.32 -3.0 620,497 + DDA3937_RS02820 0.34 -0.1 620,497 + DDA3937_RS02820 0.34 -1.8 620,498 - DDA3937_RS02820 0.34 -0.2 620,510 + DDA3937_RS02820 0.35 +0.2 620,511 - DDA3937_RS02820 0.35 -0.5 620,618 + DDA3937_RS02820 0.44 +0.3 620,749 + DDA3937_RS02820 0.54 -0.2 620,750 - DDA3937_RS02820 0.54 -0.2 620,750 - DDA3937_RS02820 0.54 -0.5 620,750 - DDA3937_RS02820 0.54 -1.8 620,750 - DDA3937_RS02820 0.54 -0.1 620,796 - +3.0 620,797 + DDA3937_RS02820 0.57 -1.3 620,828 + DDA3937_RS02820 0.60 -1.8 620,829 - -0.2 620,829 - DDA3937_RS02820 0.60 -0.6 620,829 - DDA3937_RS02820 0.60 -0.3 620,939 - DDA3937_RS02820 0.68 +0.1 621,118 + DDA3937_RS02820 0.82 -0.2 621,119 - DDA3937_RS02820 0.82 +1.4 621,152 - DDA3937_RS02820 0.85 -0.9 621,152 - DDA3937_RS02820 0.85 -1.3 621,152 - DDA3937_RS02820 0.85 -0.6 621,170 + DDA3937_RS02820 0.86 +0.0 621,170 + DDA3937_RS02820 0.86 -0.2 621,170 + DDA3937_RS02820 0.86 -0.3 621,178 + DDA3937_RS02820 0.87 -0.1 621,178 + DDA3937_RS02820 0.87 -0.6 621,178 + DDA3937_RS02820 0.87 -0.2 621,179 - DDA3937_RS02820 0.87 -0.4 621,190 + DDA3937_RS02820 0.88 -0.9 621,203 + DDA3937_RS02820 0.89 -1.9 621,203 + DDA3937_RS02820 0.89 -0.3 621,204 - DDA3937_RS02820 0.89 +0.8 621,204 - DDA3937_RS02820 0.89 -2.4 621,205 + DDA3937_RS02820 0.89 -2.0 621,205 + DDA3937_RS02820 0.89 -0.9 621,205 + DDA3937_RS02820 0.89 -1.2 621,205 + DDA3937_RS02820 0.89 -1.2 621,205 + DDA3937_RS02820 0.89 -0.9 621,205 + DDA3937_RS02820 0.89 -0.0 621,205 + DDA3937_RS02820 0.89 -2.0 621,205 + DDA3937_RS02820 0.89 -0.5 621,205 + DDA3937_RS02820 0.89 -0.3 621,205 + DDA3937_RS02820 0.89 -0.3 621,205 + DDA3937_RS02820 0.89 -2.2 621,205 + DDA3937_RS02820 0.89 +0.3 621,206 - DDA3937_RS02820 0.89 +0.4 621,206 - DDA3937_RS02820 0.89 -1.1 621,206 - DDA3937_RS02820 0.89 +0.6 621,206 - DDA3937_RS02820 0.89 +1.2 621,206 - DDA3937_RS02820 0.89 -1.4 621,206 - DDA3937_RS02820 0.89 -1.8 621,206 - DDA3937_RS02820 0.89 -0.6 621,206 - DDA3937_RS02820 0.89 +0.7 621,206 - DDA3937_RS02820 0.89 -1.2 621,206 - DDA3937_RS02820 0.89 -0.3 621,206 - DDA3937_RS02820 0.89 -0.5 621,206 - DDA3937_RS02820 0.89 -0.1 621,206 - DDA3937_RS02820 0.89 +0.0 621,206 - DDA3937_RS02820 0.89 +0.6 621,206 - -1.4 621,211 + DDA3937_RS02820 0.89 +0.1 621,211 + DDA3937_RS02820 0.89 +0.1 621,211 + DDA3937_RS02820 0.89 -0.6 621,211 + DDA3937_RS02820 0.89 +1.8 621,211 + DDA3937_RS02820 0.89 -1.2 621,212 - DDA3937_RS02820 0.89 -0.9 621,212 - DDA3937_RS02820 0.89 -0.8 621,212 - DDA3937_RS02820 0.89 -0.2 621,212 - DDA3937_RS02820 0.89 -0.7 621,212 - DDA3937_RS02820 0.89 -0.8 621,228 - +2.7 621,284 - -1.3 621,323 - +0.5 621,376 - +0.4 621,410 - -0.8 621,415 + +0.5 621,415 + -0.6 621,416 - +0.4 621,416 - +0.2 621,559 + -0.4 621,560 - -0.8 621,609 + +3.5 621,615 - -1.6 621,660 + -1.4 621,675 + -0.4 621,676 - +0.3 621,680 + -0.2 621,681 - -0.9 621,704 + -1.2 621,704 + -0.8 621,704 + -0.3 621,704 + +0.8 621,704 + -1.2 621,705 - +1.1 621,705 - -0.0 621,705 - +0.8 621,748 + -0.5 621,748 + -0.6 621,749 - -0.9 621,848 - +1.7 621,848 - -0.7 621,923 - -1.4 621,959 - -2.3 622,089 + DDA3937_RS02825 0.16 -0.6 622,146 + DDA3937_RS02825 0.20 +0.8 622,147 - DDA3937_RS02825 0.20 -0.2 622,165 + DDA3937_RS02825 0.21 +0.5 622,237 - DDA3937_RS02825 0.26 +0.6
Or see this region's nucleotide sequence