Experiment: Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS02485 and DDA3937_RS02490 are separated by 468 nucleotides DDA3937_RS02490 and DDA3937_RS02495 are separated by 27 nucleotides DDA3937_RS02495 and DDA3937_RS02500 are separated by 250 nucleotides
DDA3937_RS02485: DDA3937_RS02485 - bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase, at 550,857 to 551,480
_RS02485
DDA3937_RS02490: DDA3937_RS02490 - amidohydrolase, at 551,949 to 553,118
_RS02490
DDA3937_RS02495: DDA3937_RS02495 - hypothetical protein, at 553,146 to 553,388
_RS02495
DDA3937_RS02500: DDA3937_RS02500 - ABC transporter ATP-binding protein, at 553,639 to 554,454
_RS02500
Position (kb) 551
552
553
554 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6
7 at 551.095 kb on - strand, within DDA3937_RS02485 at 551.095 kb on - strand, within DDA3937_RS02485 at 551.095 kb on - strand, within DDA3937_RS02485 at 551.095 kb on - strand, within DDA3937_RS02485 at 551.095 kb on - strand, within DDA3937_RS02485 at 551.242 kb on + strand, within DDA3937_RS02485 at 551.242 kb on + strand, within DDA3937_RS02485 at 551.243 kb on - strand, within DDA3937_RS02485 at 551.243 kb on - strand, within DDA3937_RS02485 at 551.243 kb on - strand, within DDA3937_RS02485 at 551.274 kb on + strand, within DDA3937_RS02485 at 551.274 kb on + strand, within DDA3937_RS02485 at 551.274 kb on + strand, within DDA3937_RS02485 at 551.274 kb on + strand, within DDA3937_RS02485 at 551.274 kb on + strand, within DDA3937_RS02485 at 551.274 kb on + strand, within DDA3937_RS02485 at 551.274 kb on + strand, within DDA3937_RS02485 at 551.274 kb on + strand, within DDA3937_RS02485 at 551.275 kb on - strand, within DDA3937_RS02485 at 551.275 kb on - strand, within DDA3937_RS02485 at 551.275 kb on - strand, within DDA3937_RS02485 at 551.275 kb on - strand, within DDA3937_RS02485 at 551.323 kb on + strand, within DDA3937_RS02485 at 551.323 kb on + strand, within DDA3937_RS02485 at 551.323 kb on + strand, within DDA3937_RS02485 at 551.323 kb on + strand, within DDA3937_RS02485 at 551.324 kb on - strand, within DDA3937_RS02485 at 551.332 kb on - strand, within DDA3937_RS02485 at 551.332 kb on - strand, within DDA3937_RS02485 at 551.332 kb on - strand, within DDA3937_RS02485 at 551.332 kb on - strand, within DDA3937_RS02485 at 551.332 kb on - strand, within DDA3937_RS02485 at 551.332 kb on - strand, within DDA3937_RS02485 at 551.343 kb on - strand, within DDA3937_RS02485 at 551.361 kb on - strand, within DDA3937_RS02485 at 551.363 kb on + strand, within DDA3937_RS02485 at 551.363 kb on + strand, within DDA3937_RS02485 at 551.364 kb on - strand, within DDA3937_RS02485 at 551.364 kb on - strand, within DDA3937_RS02485 at 551.364 kb on - strand at 551.364 kb on - strand, within DDA3937_RS02485 at 551.372 kb on + strand at 551.373 kb on - strand, within DDA3937_RS02485 at 551.413 kb on + strand, within DDA3937_RS02485 at 551.413 kb on + strand, within DDA3937_RS02485 at 551.424 kb on + strand at 551.424 kb on + strand at 551.424 kb on + strand at 551.449 kb on + strand at 551.450 kb on - strand at 551.450 kb on - strand at 551.503 kb on - strand at 551.507 kb on - strand at 551.525 kb on + strand at 551.534 kb on + strand at 551.534 kb on + strand at 551.535 kb on - strand at 551.535 kb on - strand at 551.604 kb on + strand at 551.604 kb on + strand at 551.604 kb on + strand at 551.604 kb on + strand at 551.605 kb on - strand at 551.639 kb on + strand at 551.639 kb on + strand at 551.639 kb on + strand at 551.640 kb on - strand at 551.640 kb on - strand at 551.712 kb on - strand at 551.712 kb on - strand at 551.712 kb on - strand at 551.727 kb on + strand at 551.729 kb on + strand at 551.730 kb on - strand at 551.733 kb on - strand at 551.742 kb on - strand at 551.744 kb on - strand at 551.744 kb on - strand at 551.744 kb on - strand at 551.787 kb on + strand at 551.787 kb on + strand at 551.787 kb on + strand at 551.788 kb on - strand at 551.788 kb on - strand at 551.788 kb on - strand at 551.788 kb on - strand at 551.816 kb on + strand at 551.817 kb on - strand at 551.839 kb on + strand at 551.847 kb on + strand at 551.847 kb on + strand at 551.847 kb on + strand at 551.847 kb on + strand at 551.847 kb on + strand at 551.847 kb on + strand at 551.847 kb on + strand at 551.848 kb on - strand at 551.972 kb on + strand at 551.973 kb on - strand at 552.041 kb on + strand at 552.041 kb on + strand at 552.041 kb on + strand at 552.042 kb on - strand at 552.042 kb on - strand at 552.042 kb on - strand at 552.231 kb on - strand, within DDA3937_RS02490 at 552.231 kb on - strand, within DDA3937_RS02490 at 552.231 kb on - strand, within DDA3937_RS02490 at 552.286 kb on - strand, within DDA3937_RS02490 at 552.414 kb on + strand, within DDA3937_RS02490 at 552.414 kb on + strand, within DDA3937_RS02490 at 552.414 kb on + strand, within DDA3937_RS02490 at 552.414 kb on + strand, within DDA3937_RS02490 at 552.414 kb on + strand, within DDA3937_RS02490 at 552.415 kb on - strand, within DDA3937_RS02490 at 552.415 kb on - strand, within DDA3937_RS02490 at 552.415 kb on - strand, within DDA3937_RS02490 at 552.415 kb on - strand, within DDA3937_RS02490 at 552.415 kb on - strand, within DDA3937_RS02490 at 552.763 kb on - strand, within DDA3937_RS02490 at 552.763 kb on - strand, within DDA3937_RS02490 at 552.946 kb on - strand, within DDA3937_RS02490 at 552.953 kb on - strand, within DDA3937_RS02490 at 552.953 kb on - strand, within DDA3937_RS02490 at 552.972 kb on + strand, within DDA3937_RS02490 at 552.973 kb on - strand, within DDA3937_RS02490 at 553.037 kb on + strand at 553.049 kb on + strand at 553.128 kb on + strand at 553.128 kb on + strand at 553.129 kb on - strand at 553.129 kb on - strand at 553.129 kb on - strand at 553.129 kb on - strand at 553.129 kb on - strand at 553.148 kb on - strand at 553.157 kb on + strand at 553.158 kb on - strand at 553.217 kb on + strand, within DDA3937_RS02495 at 553.415 kb on - strand at 553.415 kb on - strand at 553.467 kb on + strand at 553.468 kb on - strand at 553.468 kb on - strand at 553.473 kb on - strand at 553.516 kb on - strand at 553.516 kb on - strand at 553.525 kb on - strand at 553.525 kb on - strand at 553.525 kb on - strand at 553.525 kb on - strand at 553.670 kb on + strand at 553.671 kb on - strand at 553.693 kb on + strand at 553.694 kb on - strand at 553.694 kb on - strand at 553.719 kb on + strand at 553.945 kb on + strand, within DDA3937_RS02500 at 553.945 kb on + strand, within DDA3937_RS02500 at 553.945 kb on + strand, within DDA3937_RS02500 at 553.945 kb on + strand, within DDA3937_RS02500 at 553.946 kb on - strand, within DDA3937_RS02500 at 553.946 kb on - strand, within DDA3937_RS02500 at 553.946 kb on - strand, within DDA3937_RS02500 at 553.946 kb on - strand, within DDA3937_RS02500 at 553.946 kb on - strand, within DDA3937_RS02500 at 553.946 kb on - strand, within DDA3937_RS02500 at 553.946 kb on - strand, within DDA3937_RS02500 at 554.046 kb on - strand, within DDA3937_RS02500
Per-strain Table
Position Strand Gene LocusTag Fraction Atlantic remove 551,095 - DDA3937_RS02485 0.38 +0.7 551,095 - DDA3937_RS02485 0.38 -0.3 551,095 - DDA3937_RS02485 0.38 -0.3 551,095 - DDA3937_RS02485 0.38 +1.5 551,095 - DDA3937_RS02485 0.38 +0.2 551,242 + DDA3937_RS02485 0.62 -0.9 551,242 + DDA3937_RS02485 0.62 -1.1 551,243 - DDA3937_RS02485 0.62 +0.5 551,243 - DDA3937_RS02485 0.62 -1.1 551,243 - DDA3937_RS02485 0.62 -0.5 551,274 + DDA3937_RS02485 0.67 +0.2 551,274 + DDA3937_RS02485 0.67 +0.0 551,274 + DDA3937_RS02485 0.67 -0.6 551,274 + DDA3937_RS02485 0.67 -1.2 551,274 + DDA3937_RS02485 0.67 +0.2 551,274 + DDA3937_RS02485 0.67 -0.7 551,274 + DDA3937_RS02485 0.67 +0.6 551,274 + DDA3937_RS02485 0.67 -0.3 551,275 - DDA3937_RS02485 0.67 -0.9 551,275 - DDA3937_RS02485 0.67 +0.6 551,275 - DDA3937_RS02485 0.67 -0.5 551,275 - DDA3937_RS02485 0.67 -0.3 551,323 + DDA3937_RS02485 0.75 -0.5 551,323 + DDA3937_RS02485 0.75 +0.5 551,323 + DDA3937_RS02485 0.75 +0.3 551,323 + DDA3937_RS02485 0.75 -1.1 551,324 - DDA3937_RS02485 0.75 -2.0 551,332 - DDA3937_RS02485 0.76 -1.4 551,332 - DDA3937_RS02485 0.76 -0.7 551,332 - DDA3937_RS02485 0.76 -1.2 551,332 - DDA3937_RS02485 0.76 +0.5 551,332 - DDA3937_RS02485 0.76 +0.4 551,332 - DDA3937_RS02485 0.76 -0.5 551,343 - DDA3937_RS02485 0.78 -0.3 551,361 - DDA3937_RS02485 0.81 +0.8 551,363 + DDA3937_RS02485 0.81 +0.4 551,363 + DDA3937_RS02485 0.81 -2.2 551,364 - DDA3937_RS02485 0.81 +3.2 551,364 - DDA3937_RS02485 0.81 -0.8 551,364 - -0.1 551,364 - DDA3937_RS02485 0.81 -1.5 551,372 + +0.5 551,373 - DDA3937_RS02485 0.83 +1.2 551,413 + DDA3937_RS02485 0.89 +0.4 551,413 + DDA3937_RS02485 0.89 +1.3 551,424 + -1.3 551,424 + -0.1 551,424 + -0.1 551,449 + +0.1 551,450 - -0.6 551,450 - +0.0 551,503 - -0.7 551,507 - +0.5 551,525 + -1.2 551,534 + +0.6 551,534 + +0.8 551,535 - +0.4 551,535 - -1.5 551,604 + +0.5 551,604 + +0.0 551,604 + +0.1 551,604 + -0.5 551,605 - -0.8 551,639 + +1.5 551,639 + -0.8 551,639 + -0.4 551,640 - +0.1 551,640 - -0.3 551,712 - +0.0 551,712 - +1.2 551,712 - +0.5 551,727 + -0.5 551,729 + -0.2 551,730 - +1.3 551,733 - +0.8 551,742 - +0.5 551,744 - -1.2 551,744 - +0.4 551,744 - +0.7 551,787 + +0.7 551,787 + +1.5 551,787 + -0.1 551,788 - +0.2 551,788 - -2.2 551,788 - -0.9 551,788 - -1.0 551,816 + -0.6 551,817 - -0.6 551,839 + +0.0 551,847 + -0.2 551,847 + -0.4 551,847 + -0.3 551,847 + -1.2 551,847 + -0.3 551,847 + -1.2 551,847 + +0.0 551,848 - +7.7 551,972 + -1.5 551,973 - -0.5 552,041 + -0.3 552,041 + +1.8 552,041 + +0.9 552,042 - +1.8 552,042 - -0.1 552,042 - -0.5 552,231 - DDA3937_RS02490 0.24 +0.7 552,231 - DDA3937_RS02490 0.24 -0.3 552,231 - DDA3937_RS02490 0.24 +1.1 552,286 - DDA3937_RS02490 0.29 -0.2 552,414 + DDA3937_RS02490 0.40 +1.5 552,414 + DDA3937_RS02490 0.40 -0.5 552,414 + DDA3937_RS02490 0.40 -0.7 552,414 + DDA3937_RS02490 0.40 -1.6 552,414 + DDA3937_RS02490 0.40 -0.3 552,415 - DDA3937_RS02490 0.40 -0.8 552,415 - DDA3937_RS02490 0.40 -0.6 552,415 - DDA3937_RS02490 0.40 +0.0 552,415 - DDA3937_RS02490 0.40 +1.2 552,415 - DDA3937_RS02490 0.40 -1.5 552,763 - DDA3937_RS02490 0.70 -0.9 552,763 - DDA3937_RS02490 0.70 +0.3 552,946 - DDA3937_RS02490 0.85 -0.1 552,953 - DDA3937_RS02490 0.86 +0.1 552,953 - DDA3937_RS02490 0.86 +1.9 552,972 + DDA3937_RS02490 0.87 -0.1 552,973 - DDA3937_RS02490 0.88 -0.7 553,037 + +0.4 553,049 + +0.3 553,128 + +1.8 553,128 + -0.5 553,129 - +0.7 553,129 - -0.4 553,129 - +0.5 553,129 - -0.7 553,129 - -0.5 553,148 - +0.7 553,157 + -0.3 553,158 - -0.9 553,217 + DDA3937_RS02495 0.29 +0.1 553,415 - -0.5 553,415 - -0.5 553,467 + -1.9 553,468 - -0.3 553,468 - +1.8 553,473 - +0.6 553,516 - -0.6 553,516 - +4.5 553,525 - +1.0 553,525 - -0.3 553,525 - +1.0 553,525 - -0.5 553,670 + +1.5 553,671 - -0.1 553,693 + +0.7 553,694 - -0.5 553,694 - +0.3 553,719 + -2.3 553,945 + DDA3937_RS02500 0.38 -0.6 553,945 + DDA3937_RS02500 0.38 -1.2 553,945 + DDA3937_RS02500 0.38 -0.6 553,945 + DDA3937_RS02500 0.38 -0.0 553,946 - DDA3937_RS02500 0.38 +0.5 553,946 - DDA3937_RS02500 0.38 -0.3 553,946 - DDA3937_RS02500 0.38 -1.1 553,946 - DDA3937_RS02500 0.38 +0.9 553,946 - DDA3937_RS02500 0.38 +0.3 553,946 - DDA3937_RS02500 0.38 +0.4 553,946 - DDA3937_RS02500 0.38 +0.3 554,046 - DDA3937_RS02500 0.50 -0.9
Or see this region's nucleotide sequence