Experiment: Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS02415 and DDA3937_RS02420 are separated by 69 nucleotides DDA3937_RS02420 and DDA3937_RS02425 are separated by 80 nucleotides
DDA3937_RS02415: DDA3937_RS02415 - multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR, at 534,321 to 535,577
_RS02415
DDA3937_RS02420: DDA3937_RS02420 - DNA repair protein RadA, at 535,647 to 537,032
_RS02420
DDA3937_RS02425: DDA3937_RS02425 - phosphoserine phosphatase, at 537,113 to 538,090
_RS02425
Position (kb) 535
536
537
538 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5
6 at 534.676 kb on + strand, within DDA3937_RS02415 at 534.677 kb on - strand, within DDA3937_RS02415 at 534.697 kb on + strand, within DDA3937_RS02415 at 534.698 kb on - strand, within DDA3937_RS02415 at 534.779 kb on - strand, within DDA3937_RS02415 at 534.779 kb on - strand, within DDA3937_RS02415 at 534.779 kb on - strand, within DDA3937_RS02415 at 534.914 kb on + strand at 534.914 kb on + strand, within DDA3937_RS02415 at 534.915 kb on - strand, within DDA3937_RS02415 at 534.915 kb on - strand, within DDA3937_RS02415 at 534.916 kb on + strand, within DDA3937_RS02415 at 534.916 kb on + strand, within DDA3937_RS02415 at 534.916 kb on + strand, within DDA3937_RS02415 at 534.916 kb on + strand, within DDA3937_RS02415 at 534.916 kb on + strand, within DDA3937_RS02415 at 534.917 kb on - strand, within DDA3937_RS02415 at 534.917 kb on - strand, within DDA3937_RS02415 at 534.917 kb on - strand, within DDA3937_RS02415 at 534.917 kb on - strand, within DDA3937_RS02415 at 534.917 kb on - strand, within DDA3937_RS02415 at 534.917 kb on - strand, within DDA3937_RS02415 at 534.917 kb on - strand, within DDA3937_RS02415 at 535.022 kb on - strand, within DDA3937_RS02415 at 535.051 kb on + strand, within DDA3937_RS02415 at 535.051 kb on + strand, within DDA3937_RS02415 at 535.085 kb on + strand, within DDA3937_RS02415 at 535.085 kb on + strand, within DDA3937_RS02415 at 535.085 kb on + strand, within DDA3937_RS02415 at 535.086 kb on - strand, within DDA3937_RS02415 at 535.086 kb on - strand, within DDA3937_RS02415 at 535.296 kb on + strand, within DDA3937_RS02415 at 535.296 kb on + strand, within DDA3937_RS02415 at 535.297 kb on - strand, within DDA3937_RS02415 at 535.297 kb on - strand, within DDA3937_RS02415 at 535.297 kb on - strand, within DDA3937_RS02415 at 535.297 kb on - strand, within DDA3937_RS02415 at 535.297 kb on - strand, within DDA3937_RS02415 at 535.297 kb on - strand at 535.334 kb on - strand, within DDA3937_RS02415 at 535.358 kb on - strand, within DDA3937_RS02415 at 535.371 kb on + strand, within DDA3937_RS02415 at 535.371 kb on + strand, within DDA3937_RS02415 at 535.372 kb on - strand, within DDA3937_RS02415 at 535.372 kb on - strand, within DDA3937_RS02415 at 535.397 kb on - strand, within DDA3937_RS02415 at 535.434 kb on + strand, within DDA3937_RS02415 at 535.434 kb on + strand, within DDA3937_RS02415 at 535.434 kb on + strand, within DDA3937_RS02415 at 535.486 kb on + strand at 535.567 kb on + strand at 535.611 kb on + strand at 535.611 kb on + strand at 535.611 kb on + strand at 535.612 kb on - strand at 535.612 kb on - strand at 535.612 kb on - strand at 535.612 kb on - strand at 535.612 kb on - strand at 535.617 kb on - strand at 535.698 kb on + strand at 535.699 kb on - strand at 535.699 kb on - strand at 535.784 kb on + strand at 535.784 kb on + strand at 535.784 kb on + strand at 535.785 kb on - strand at 536.124 kb on + strand, within DDA3937_RS02420 at 536.124 kb on + strand, within DDA3937_RS02420 at 536.124 kb on + strand, within DDA3937_RS02420 at 536.125 kb on - strand, within DDA3937_RS02420 at 536.125 kb on - strand, within DDA3937_RS02420 at 536.125 kb on - strand, within DDA3937_RS02420 at 536.125 kb on - strand, within DDA3937_RS02420 at 536.223 kb on + strand, within DDA3937_RS02420 at 536.322 kb on - strand, within DDA3937_RS02420 at 536.322 kb on - strand, within DDA3937_RS02420 at 536.422 kb on + strand, within DDA3937_RS02420 at 536.650 kb on + strand, within DDA3937_RS02420 at 536.650 kb on + strand, within DDA3937_RS02420 at 536.651 kb on - strand, within DDA3937_RS02420 at 536.651 kb on - strand, within DDA3937_RS02420 at 536.651 kb on - strand, within DDA3937_RS02420 at 536.651 kb on - strand, within DDA3937_RS02420 at 536.651 kb on - strand, within DDA3937_RS02420 at 536.702 kb on + strand, within DDA3937_RS02420 at 536.833 kb on - strand, within DDA3937_RS02420 at 536.980 kb on + strand at 537.000 kb on - strand at 537.037 kb on + strand at 537.037 kb on + strand at 537.038 kb on - strand at 537.038 kb on - strand at 537.038 kb on - strand at 537.038 kb on - strand at 537.038 kb on - strand at 537.049 kb on - strand at 537.049 kb on - strand at 537.074 kb on - strand at 537.076 kb on + strand at 537.076 kb on + strand at 537.076 kb on + strand at 537.077 kb on - strand at 537.077 kb on - strand at 537.077 kb on - strand at 537.090 kb on - strand at 537.103 kb on - strand at 537.103 kb on - strand at 537.343 kb on + strand, within DDA3937_RS02425 at 537.344 kb on - strand, within DDA3937_RS02425 at 537.345 kb on + strand, within DDA3937_RS02425 at 537.346 kb on - strand, within DDA3937_RS02425 at 537.451 kb on - strand, within DDA3937_RS02425 at 537.451 kb on - strand, within DDA3937_RS02425 at 537.462 kb on + strand, within DDA3937_RS02425 at 537.463 kb on - strand, within DDA3937_RS02425 at 537.463 kb on - strand, within DDA3937_RS02425 at 537.463 kb on - strand, within DDA3937_RS02425 at 537.463 kb on - strand, within DDA3937_RS02425 at 537.668 kb on + strand, within DDA3937_RS02425 at 537.668 kb on + strand, within DDA3937_RS02425 at 537.710 kb on - strand, within DDA3937_RS02425 at 537.710 kb on - strand, within DDA3937_RS02425 at 537.710 kb on - strand, within DDA3937_RS02425 at 537.710 kb on - strand, within DDA3937_RS02425 at 537.710 kb on - strand, within DDA3937_RS02425 at 537.783 kb on + strand at 537.783 kb on + strand, within DDA3937_RS02425 at 537.783 kb on + strand, within DDA3937_RS02425 at 537.783 kb on + strand, within DDA3937_RS02425 at 537.783 kb on + strand, within DDA3937_RS02425 at 537.783 kb on + strand, within DDA3937_RS02425 at 537.784 kb on - strand, within DDA3937_RS02425 at 537.784 kb on - strand, within DDA3937_RS02425 at 537.784 kb on - strand, within DDA3937_RS02425 at 537.784 kb on - strand, within DDA3937_RS02425 at 537.784 kb on - strand, within DDA3937_RS02425 at 537.856 kb on + strand, within DDA3937_RS02425 at 537.856 kb on + strand, within DDA3937_RS02425 at 537.856 kb on + strand, within DDA3937_RS02425 at 537.857 kb on - strand, within DDA3937_RS02425 at 537.857 kb on - strand, within DDA3937_RS02425 at 537.857 kb on - strand, within DDA3937_RS02425 at 537.861 kb on - strand, within DDA3937_RS02425 at 537.939 kb on + strand, within DDA3937_RS02425 at 537.940 kb on - strand, within DDA3937_RS02425 at 537.940 kb on - strand, within DDA3937_RS02425 at 537.960 kb on + strand, within DDA3937_RS02425 at 537.961 kb on - strand, within DDA3937_RS02425 at 538.003 kb on + strand at 538.004 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Atlantic remove 534,676 + DDA3937_RS02415 0.28 +1.0 534,677 - DDA3937_RS02415 0.28 +0.7 534,697 + DDA3937_RS02415 0.30 +0.4 534,698 - DDA3937_RS02415 0.30 +0.4 534,779 - DDA3937_RS02415 0.36 -1.1 534,779 - DDA3937_RS02415 0.36 -0.7 534,779 - DDA3937_RS02415 0.36 +0.5 534,914 + +3.8 534,914 + DDA3937_RS02415 0.47 +0.9 534,915 - DDA3937_RS02415 0.47 -0.9 534,915 - DDA3937_RS02415 0.47 -0.5 534,916 + DDA3937_RS02415 0.47 -2.2 534,916 + DDA3937_RS02415 0.47 -0.1 534,916 + DDA3937_RS02415 0.47 -0.4 534,916 + DDA3937_RS02415 0.47 -0.2 534,916 + DDA3937_RS02415 0.47 -1.3 534,917 - DDA3937_RS02415 0.47 -1.9 534,917 - DDA3937_RS02415 0.47 +1.3 534,917 - DDA3937_RS02415 0.47 +6.6 534,917 - DDA3937_RS02415 0.47 -1.7 534,917 - DDA3937_RS02415 0.47 +0.6 534,917 - DDA3937_RS02415 0.47 -0.9 534,917 - DDA3937_RS02415 0.47 -0.9 535,022 - DDA3937_RS02415 0.56 -0.9 535,051 + DDA3937_RS02415 0.58 +0.8 535,051 + DDA3937_RS02415 0.58 -1.8 535,085 + DDA3937_RS02415 0.61 -0.5 535,085 + DDA3937_RS02415 0.61 -1.0 535,085 + DDA3937_RS02415 0.61 -1.3 535,086 - DDA3937_RS02415 0.61 -0.6 535,086 - DDA3937_RS02415 0.61 +0.5 535,296 + DDA3937_RS02415 0.78 -0.5 535,296 + DDA3937_RS02415 0.78 -0.5 535,297 - DDA3937_RS02415 0.78 -0.1 535,297 - DDA3937_RS02415 0.78 -0.3 535,297 - DDA3937_RS02415 0.78 -0.5 535,297 - DDA3937_RS02415 0.78 -0.5 535,297 - DDA3937_RS02415 0.78 -0.0 535,297 - -1.1 535,334 - DDA3937_RS02415 0.81 +0.7 535,358 - DDA3937_RS02415 0.82 +0.4 535,371 + DDA3937_RS02415 0.84 -0.4 535,371 + DDA3937_RS02415 0.84 +0.0 535,372 - DDA3937_RS02415 0.84 -0.4 535,372 - DDA3937_RS02415 0.84 -0.2 535,397 - DDA3937_RS02415 0.86 -0.5 535,434 + DDA3937_RS02415 0.89 +0.2 535,434 + DDA3937_RS02415 0.89 -0.1 535,434 + DDA3937_RS02415 0.89 +0.7 535,486 + +0.2 535,567 + +0.6 535,611 + -0.2 535,611 + -0.6 535,611 + +0.9 535,612 - -0.6 535,612 - +1.5 535,612 - +1.4 535,612 - -1.2 535,612 - +2.1 535,617 - +1.9 535,698 + +0.5 535,699 - -1.8 535,699 - -1.0 535,784 + +0.5 535,784 + -0.1 535,784 + +0.7 535,785 - -0.3 536,124 + DDA3937_RS02420 0.34 -1.2 536,124 + DDA3937_RS02420 0.34 +0.9 536,124 + DDA3937_RS02420 0.34 +1.5 536,125 - DDA3937_RS02420 0.34 -1.1 536,125 - DDA3937_RS02420 0.34 -0.5 536,125 - DDA3937_RS02420 0.34 -0.7 536,125 - DDA3937_RS02420 0.34 +0.2 536,223 + DDA3937_RS02420 0.42 +0.2 536,322 - DDA3937_RS02420 0.49 +4.6 536,322 - DDA3937_RS02420 0.49 -1.5 536,422 + DDA3937_RS02420 0.56 -0.7 536,650 + DDA3937_RS02420 0.72 +1.6 536,650 + DDA3937_RS02420 0.72 +0.0 536,651 - DDA3937_RS02420 0.72 -1.4 536,651 - DDA3937_RS02420 0.72 +1.1 536,651 - DDA3937_RS02420 0.72 +0.7 536,651 - DDA3937_RS02420 0.72 -0.4 536,651 - DDA3937_RS02420 0.72 +0.1 536,702 + DDA3937_RS02420 0.76 -3.2 536,833 - DDA3937_RS02420 0.86 -1.3 536,980 + +0.2 537,000 - -1.6 537,037 + -2.3 537,037 + -1.3 537,038 - -0.7 537,038 - +0.5 537,038 - -1.3 537,038 - +0.0 537,038 - -0.6 537,049 - -0.3 537,049 - -1.1 537,074 - +0.8 537,076 + +0.0 537,076 + -1.7 537,076 + +0.2 537,077 - +0.7 537,077 - +0.3 537,077 - -1.3 537,090 - -0.9 537,103 - -1.0 537,103 - -0.3 537,343 + DDA3937_RS02425 0.24 -1.3 537,344 - DDA3937_RS02425 0.24 -2.6 537,345 + DDA3937_RS02425 0.24 -3.2 537,346 - DDA3937_RS02425 0.24 -3.2 537,451 - DDA3937_RS02425 0.35 -1.5 537,451 - DDA3937_RS02425 0.35 -1.7 537,462 + DDA3937_RS02425 0.36 -1.1 537,463 - DDA3937_RS02425 0.36 -3.3 537,463 - DDA3937_RS02425 0.36 -1.7 537,463 - DDA3937_RS02425 0.36 -1.5 537,463 - DDA3937_RS02425 0.36 -2.8 537,668 + DDA3937_RS02425 0.57 -1.5 537,668 + DDA3937_RS02425 0.57 +0.5 537,710 - DDA3937_RS02425 0.61 -2.0 537,710 - DDA3937_RS02425 0.61 -3.2 537,710 - DDA3937_RS02425 0.61 -1.9 537,710 - DDA3937_RS02425 0.61 -3.8 537,710 - DDA3937_RS02425 0.61 -0.5 537,783 + -0.5 537,783 + DDA3937_RS02425 0.69 -1.0 537,783 + DDA3937_RS02425 0.69 -2.0 537,783 + DDA3937_RS02425 0.69 -0.5 537,783 + DDA3937_RS02425 0.69 +0.9 537,783 + DDA3937_RS02425 0.69 -1.5 537,784 - DDA3937_RS02425 0.69 -2.2 537,784 - DDA3937_RS02425 0.69 -2.0 537,784 - DDA3937_RS02425 0.69 +0.2 537,784 - DDA3937_RS02425 0.69 -2.0 537,784 - DDA3937_RS02425 0.69 -1.1 537,856 + DDA3937_RS02425 0.76 -0.1 537,856 + DDA3937_RS02425 0.76 -2.6 537,856 + DDA3937_RS02425 0.76 -3.8 537,857 - DDA3937_RS02425 0.76 -1.7 537,857 - DDA3937_RS02425 0.76 -2.2 537,857 - DDA3937_RS02425 0.76 -3.2 537,861 - DDA3937_RS02425 0.76 -4.0 537,939 + DDA3937_RS02425 0.84 -2.5 537,940 - DDA3937_RS02425 0.85 -1.5 537,940 - DDA3937_RS02425 0.85 -1.5 537,960 + DDA3937_RS02425 0.87 -1.1 537,961 - DDA3937_RS02425 0.87 -0.3 538,003 + -1.2 538,004 - -1.1
Or see this region's nucleotide sequence