Experiment: Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS02285 and DDA3937_RS02290 are separated by 416 nucleotides DDA3937_RS02290 and DDA3937_RS02295 are separated by 125 nucleotides
DDA3937_RS02285: DDA3937_RS02285 - MFS transporter, at 506,258 to 507,490
_RS02285
DDA3937_RS02290: DDA3937_RS02290 - HD domain-containing protein, at 507,907 to 508,617
_RS02290
DDA3937_RS02295: DDA3937_RS02295 - IclR family transcriptional regulator, at 508,743 to 509,549
_RS02295
Position (kb) 507
508
509 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 506.915 kb on - strand, within DDA3937_RS02285 at 506.967 kb on + strand, within DDA3937_RS02285 at 506.971 kb on - strand, within DDA3937_RS02285 at 506.981 kb on + strand, within DDA3937_RS02285 at 506.982 kb on - strand, within DDA3937_RS02285 at 506.982 kb on - strand, within DDA3937_RS02285 at 506.985 kb on + strand, within DDA3937_RS02285 at 506.985 kb on + strand, within DDA3937_RS02285 at 506.986 kb on - strand, within DDA3937_RS02285 at 506.986 kb on - strand, within DDA3937_RS02285 at 506.986 kb on - strand, within DDA3937_RS02285 at 507.003 kb on + strand, within DDA3937_RS02285 at 507.003 kb on + strand, within DDA3937_RS02285 at 507.003 kb on + strand, within DDA3937_RS02285 at 507.003 kb on + strand, within DDA3937_RS02285 at 507.003 kb on + strand, within DDA3937_RS02285 at 507.004 kb on - strand, within DDA3937_RS02285 at 507.004 kb on - strand, within DDA3937_RS02285 at 507.024 kb on + strand at 507.030 kb on + strand, within DDA3937_RS02285 at 507.031 kb on - strand, within DDA3937_RS02285 at 507.031 kb on - strand, within DDA3937_RS02285 at 507.039 kb on - strand, within DDA3937_RS02285 at 507.039 kb on - strand, within DDA3937_RS02285 at 507.039 kb on - strand, within DDA3937_RS02285 at 507.369 kb on + strand at 507.369 kb on + strand at 507.385 kb on - strand at 507.385 kb on - strand at 507.385 kb on - strand at 507.385 kb on - strand at 507.385 kb on - strand at 507.495 kb on + strand at 507.496 kb on - strand at 507.496 kb on - strand at 507.496 kb on - strand at 507.500 kb on - strand at 507.512 kb on - strand at 507.512 kb on - strand at 507.512 kb on - strand at 507.515 kb on - strand at 507.524 kb on - strand at 507.570 kb on + strand at 507.570 kb on + strand at 507.571 kb on - strand at 507.629 kb on - strand at 507.633 kb on + strand at 507.635 kb on + strand at 507.704 kb on + strand at 507.704 kb on + strand at 507.705 kb on - strand at 507.707 kb on - strand at 507.718 kb on + strand at 507.720 kb on + strand at 507.724 kb on - strand at 507.806 kb on - strand at 507.856 kb on - strand at 507.882 kb on - strand at 507.882 kb on - strand at 507.914 kb on + strand at 507.914 kb on + strand at 507.914 kb on + strand at 507.915 kb on - strand at 507.915 kb on - strand at 507.915 kb on - strand at 507.943 kb on + strand at 507.943 kb on + strand at 507.943 kb on + strand at 507.944 kb on - strand at 507.947 kb on + strand at 507.948 kb on - strand at 508.249 kb on - strand, within DDA3937_RS02290 at 508.334 kb on - strand, within DDA3937_RS02290 at 508.334 kb on - strand, within DDA3937_RS02290 at 508.334 kb on - strand, within DDA3937_RS02290 at 508.415 kb on - strand, within DDA3937_RS02290 at 508.467 kb on + strand, within DDA3937_RS02290 at 508.619 kb on + strand at 508.619 kb on + strand at 508.619 kb on + strand at 508.686 kb on + strand at 508.686 kb on + strand at 508.687 kb on - strand at 508.687 kb on - strand at 508.687 kb on - strand at 508.687 kb on - strand at 508.687 kb on - strand at 508.717 kb on + strand at 508.718 kb on - strand at 508.721 kb on - strand at 508.770 kb on - strand at 508.822 kb on + strand at 508.880 kb on + strand, within DDA3937_RS02295 at 508.880 kb on + strand at 508.881 kb on - strand, within DDA3937_RS02295 at 508.956 kb on + strand, within DDA3937_RS02295 at 509.098 kb on - strand, within DDA3937_RS02295 at 509.098 kb on - strand, within DDA3937_RS02295 at 509.098 kb on - strand, within DDA3937_RS02295 at 509.119 kb on + strand, within DDA3937_RS02295 at 509.119 kb on + strand, within DDA3937_RS02295 at 509.119 kb on + strand, within DDA3937_RS02295 at 509.120 kb on - strand, within DDA3937_RS02295 at 509.120 kb on - strand, within DDA3937_RS02295 at 509.120 kb on - strand, within DDA3937_RS02295 at 509.120 kb on - strand, within DDA3937_RS02295 at 509.126 kb on + strand, within DDA3937_RS02295 at 509.126 kb on + strand, within DDA3937_RS02295 at 509.126 kb on + strand, within DDA3937_RS02295 at 509.127 kb on - strand, within DDA3937_RS02295 at 509.136 kb on - strand, within DDA3937_RS02295 at 509.136 kb on - strand, within DDA3937_RS02295 at 509.154 kb on + strand, within DDA3937_RS02295 at 509.154 kb on + strand, within DDA3937_RS02295 at 509.154 kb on + strand, within DDA3937_RS02295 at 509.155 kb on - strand, within DDA3937_RS02295 at 509.155 kb on - strand, within DDA3937_RS02295 at 509.177 kb on - strand, within DDA3937_RS02295 at 509.177 kb on - strand, within DDA3937_RS02295 at 509.177 kb on - strand, within DDA3937_RS02295 at 509.177 kb on - strand, within DDA3937_RS02295 at 509.282 kb on + strand, within DDA3937_RS02295 at 509.282 kb on + strand, within DDA3937_RS02295 at 509.282 kb on + strand at 509.282 kb on + strand, within DDA3937_RS02295 at 509.282 kb on + strand, within DDA3937_RS02295 at 509.283 kb on - strand, within DDA3937_RS02295 at 509.283 kb on - strand, within DDA3937_RS02295 at 509.303 kb on + strand, within DDA3937_RS02295 at 509.303 kb on + strand, within DDA3937_RS02295 at 509.304 kb on - strand, within DDA3937_RS02295 at 509.304 kb on - strand, within DDA3937_RS02295 at 509.304 kb on - strand, within DDA3937_RS02295 at 509.304 kb on - strand, within DDA3937_RS02295 at 509.422 kb on - strand, within DDA3937_RS02295 at 509.422 kb on - strand, within DDA3937_RS02295 at 509.547 kb on + strand at 509.547 kb on + strand at 509.547 kb on + strand at 509.547 kb on + strand at 509.547 kb on + strand at 509.547 kb on + strand at 509.548 kb on - strand at 509.548 kb on - strand at 509.551 kb on + strand at 509.582 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Atlantic remove 506,915 - DDA3937_RS02285 0.53 -0.5 506,967 + DDA3937_RS02285 0.58 +0.2 506,971 - DDA3937_RS02285 0.58 -0.3 506,981 + DDA3937_RS02285 0.59 -1.3 506,982 - DDA3937_RS02285 0.59 -2.9 506,982 - DDA3937_RS02285 0.59 -1.0 506,985 + DDA3937_RS02285 0.59 -0.5 506,985 + DDA3937_RS02285 0.59 -0.1 506,986 - DDA3937_RS02285 0.59 -0.8 506,986 - DDA3937_RS02285 0.59 -0.0 506,986 - DDA3937_RS02285 0.59 +0.9 507,003 + DDA3937_RS02285 0.60 +0.3 507,003 + DDA3937_RS02285 0.60 +2.1 507,003 + DDA3937_RS02285 0.60 +0.9 507,003 + DDA3937_RS02285 0.60 -0.8 507,003 + DDA3937_RS02285 0.60 -2.6 507,004 - DDA3937_RS02285 0.61 -0.2 507,004 - DDA3937_RS02285 0.61 -1.3 507,024 + -0.1 507,030 + DDA3937_RS02285 0.63 -0.3 507,031 - DDA3937_RS02285 0.63 -1.0 507,031 - DDA3937_RS02285 0.63 +0.7 507,039 - DDA3937_RS02285 0.63 -1.1 507,039 - DDA3937_RS02285 0.63 -0.3 507,039 - DDA3937_RS02285 0.63 -0.1 507,369 + -0.3 507,369 + -1.1 507,385 - -1.4 507,385 - -0.9 507,385 - +0.1 507,385 - +0.4 507,385 - -0.2 507,495 + -0.9 507,496 - +0.2 507,496 - -0.7 507,496 - -0.1 507,500 - -3.0 507,512 - +2.3 507,512 - -0.5 507,512 - -0.3 507,515 - -1.4 507,524 - -2.2 507,570 + -0.1 507,570 + -0.1 507,571 - -0.6 507,629 - -1.5 507,633 + +0.1 507,635 + -1.9 507,704 + +0.5 507,704 + +0.5 507,705 - -0.3 507,707 - -2.2 507,718 + +2.3 507,720 + -1.3 507,724 - +1.0 507,806 - -0.3 507,856 - +1.3 507,882 - -0.3 507,882 - +0.9 507,914 + +0.1 507,914 + +0.2 507,914 + +0.9 507,915 - +1.1 507,915 - -1.0 507,915 - -1.4 507,943 + -1.4 507,943 + +0.1 507,943 + -1.9 507,944 - -1.9 507,947 + -3.1 507,948 - -0.9 508,249 - DDA3937_RS02290 0.48 +0.7 508,334 - DDA3937_RS02290 0.60 +0.4 508,334 - DDA3937_RS02290 0.60 +2.4 508,334 - DDA3937_RS02290 0.60 -0.9 508,415 - DDA3937_RS02290 0.71 +0.4 508,467 + DDA3937_RS02290 0.79 -1.6 508,619 + -0.0 508,619 + -0.3 508,619 + -1.0 508,686 + -0.4 508,686 + -0.6 508,687 - -2.1 508,687 - +0.5 508,687 - +0.8 508,687 - +0.9 508,687 - +0.4 508,717 + -2.5 508,718 - +0.5 508,721 - -0.3 508,770 - -1.4 508,822 + -0.2 508,880 + DDA3937_RS02295 0.17 +2.0 508,880 + +0.7 508,881 - DDA3937_RS02295 0.17 -0.1 508,956 + DDA3937_RS02295 0.26 +0.7 509,098 - DDA3937_RS02295 0.44 -1.1 509,098 - DDA3937_RS02295 0.44 -1.3 509,098 - DDA3937_RS02295 0.44 +0.2 509,119 + DDA3937_RS02295 0.47 +0.8 509,119 + DDA3937_RS02295 0.47 +0.2 509,119 + DDA3937_RS02295 0.47 +0.5 509,120 - DDA3937_RS02295 0.47 -0.7 509,120 - DDA3937_RS02295 0.47 +0.3 509,120 - DDA3937_RS02295 0.47 -2.2 509,120 - DDA3937_RS02295 0.47 -0.8 509,126 + DDA3937_RS02295 0.47 -1.3 509,126 + DDA3937_RS02295 0.47 -1.7 509,126 + DDA3937_RS02295 0.47 -1.5 509,127 - DDA3937_RS02295 0.48 +0.3 509,136 - DDA3937_RS02295 0.49 +0.1 509,136 - DDA3937_RS02295 0.49 -1.4 509,154 + DDA3937_RS02295 0.51 +0.5 509,154 + DDA3937_RS02295 0.51 -0.5 509,154 + DDA3937_RS02295 0.51 +0.2 509,155 - DDA3937_RS02295 0.51 +0.8 509,155 - DDA3937_RS02295 0.51 +0.5 509,177 - DDA3937_RS02295 0.54 -1.5 509,177 - DDA3937_RS02295 0.54 -3.3 509,177 - DDA3937_RS02295 0.54 +0.2 509,177 - DDA3937_RS02295 0.54 -0.6 509,282 + DDA3937_RS02295 0.67 +0.4 509,282 + DDA3937_RS02295 0.67 +3.3 509,282 + +0.5 509,282 + DDA3937_RS02295 0.67 -0.4 509,282 + DDA3937_RS02295 0.67 +0.0 509,283 - DDA3937_RS02295 0.67 -1.2 509,283 - DDA3937_RS02295 0.67 +1.9 509,303 + DDA3937_RS02295 0.69 -0.1 509,303 + DDA3937_RS02295 0.69 -1.3 509,304 - DDA3937_RS02295 0.70 +0.1 509,304 - DDA3937_RS02295 0.70 -1.3 509,304 - DDA3937_RS02295 0.70 -0.9 509,304 - DDA3937_RS02295 0.70 -0.9 509,422 - DDA3937_RS02295 0.84 -1.1 509,422 - DDA3937_RS02295 0.84 -1.7 509,547 + +0.8 509,547 + -0.1 509,547 + -1.1 509,547 + -1.3 509,547 + -0.9 509,547 + -1.0 509,548 - +0.4 509,548 - -0.9 509,551 + -1.8 509,582 + +0.3
Or see this region's nucleotide sequence