Experiment: Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS02045 and DDA3937_RS02050 are separated by 223 nucleotides DDA3937_RS02050 and DDA3937_RS02055 are separated by 454 nucleotides DDA3937_RS02055 and DDA3937_RS02060 are separated by 28 nucleotides
DDA3937_RS02045: DDA3937_RS02045 - AAA family ATPase, at 460,145 to 462,190
_RS02045
DDA3937_RS02050: DDA3937_RS02050 - helix-turn-helix domain-containing protein, at 462,414 to 462,680
_RS02050
DDA3937_RS02055: DDA3937_RS02055 - hypothetical protein, at 463,135 to 463,536
_RS02055
DDA3937_RS02060: DDA3937_RS02060 - GNAT family N-acetyltransferase, at 463,565 to 464,044
_RS02060
Position (kb) 462
463 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 461.518 kb on - strand, within DDA3937_RS02045 at 461.518 kb on - strand, within DDA3937_RS02045 at 461.518 kb on - strand, within DDA3937_RS02045 at 461.518 kb on - strand, within DDA3937_RS02045 at 461.620 kb on + strand, within DDA3937_RS02045 at 461.621 kb on - strand, within DDA3937_RS02045 at 461.636 kb on + strand, within DDA3937_RS02045 at 461.636 kb on + strand, within DDA3937_RS02045 at 461.636 kb on + strand, within DDA3937_RS02045 at 461.637 kb on - strand, within DDA3937_RS02045 at 461.671 kb on + strand, within DDA3937_RS02045 at 461.749 kb on + strand, within DDA3937_RS02045 at 461.749 kb on + strand, within DDA3937_RS02045 at 461.749 kb on + strand, within DDA3937_RS02045 at 461.750 kb on - strand, within DDA3937_RS02045 at 461.750 kb on - strand, within DDA3937_RS02045 at 461.750 kb on - strand, within DDA3937_RS02045 at 461.750 kb on - strand, within DDA3937_RS02045 at 461.750 kb on - strand, within DDA3937_RS02045 at 461.834 kb on + strand, within DDA3937_RS02045 at 461.834 kb on + strand, within DDA3937_RS02045 at 461.859 kb on - strand, within DDA3937_RS02045 at 462.188 kb on + strand at 462.189 kb on - strand at 462.262 kb on + strand at 462.262 kb on + strand at 462.262 kb on + strand at 462.262 kb on + strand at 462.262 kb on + strand at 462.262 kb on + strand at 462.263 kb on - strand at 462.263 kb on - strand at 462.263 kb on - strand at 462.263 kb on - strand at 462.263 kb on - strand at 462.263 kb on - strand at 462.264 kb on + strand at 462.264 kb on + strand at 462.264 kb on + strand at 462.264 kb on + strand at 462.265 kb on - strand at 462.265 kb on - strand at 462.265 kb on - strand at 462.265 kb on - strand at 462.266 kb on + strand at 462.266 kb on + strand at 462.266 kb on + strand at 462.266 kb on + strand at 462.266 kb on + strand at 462.266 kb on + strand at 462.266 kb on + strand at 462.266 kb on + strand at 462.266 kb on + strand at 462.266 kb on + strand at 462.266 kb on + strand at 462.266 kb on + strand at 462.266 kb on + strand at 462.266 kb on + strand at 462.266 kb on + strand at 462.266 kb on + strand at 462.266 kb on + strand at 462.266 kb on + strand at 462.266 kb on + strand at 462.266 kb on + strand at 462.266 kb on + strand at 462.266 kb on + strand at 462.266 kb on + strand at 462.266 kb on + strand at 462.266 kb on + strand at 462.266 kb on + strand at 462.266 kb on + strand at 462.266 kb on + strand at 462.266 kb on + strand at 462.266 kb on + strand at 462.266 kb on + strand at 462.266 kb on + strand at 462.266 kb on + strand at 462.266 kb on + strand at 462.266 kb on + strand at 462.266 kb on + strand at 462.266 kb on + strand at 462.266 kb on + strand at 462.266 kb on + strand at 462.266 kb on + strand at 462.266 kb on + strand at 462.266 kb on + strand at 462.266 kb on + strand at 462.266 kb on + strand at 462.266 kb on + strand at 462.266 kb on + strand at 462.266 kb on + strand at 462.266 kb on + strand at 462.266 kb on + strand at 462.266 kb on + strand at 462.266 kb on + strand at 462.266 kb on + strand at 462.266 kb on + strand at 462.266 kb on + strand at 462.266 kb on + strand at 462.266 kb on + strand at 462.266 kb on + strand at 462.267 kb on - strand at 462.267 kb on - strand at 462.267 kb on - strand at 462.267 kb on - strand at 462.267 kb on - strand at 462.267 kb on - strand at 462.267 kb on - strand at 462.267 kb on - strand at 462.267 kb on - strand at 462.267 kb on - strand at 462.267 kb on - strand at 462.267 kb on - strand at 462.267 kb on - strand at 462.267 kb on - strand at 462.267 kb on - strand at 462.267 kb on - strand at 462.267 kb on - strand at 462.267 kb on - strand at 462.267 kb on - strand at 462.267 kb on - strand at 462.267 kb on - strand at 462.267 kb on - strand at 462.267 kb on - strand at 462.267 kb on - strand at 462.267 kb on - strand at 462.267 kb on - strand at 462.267 kb on - strand at 462.267 kb on - strand at 462.267 kb on - strand at 462.267 kb on - strand at 462.267 kb on - strand at 462.267 kb on - strand at 462.267 kb on - strand at 462.267 kb on - strand at 462.267 kb on - strand at 462.267 kb on - strand at 462.267 kb on - strand at 462.267 kb on - strand at 462.267 kb on - strand at 462.267 kb on - strand at 462.267 kb on - strand at 462.267 kb on - strand at 462.267 kb on - strand at 462.267 kb on - strand at 462.267 kb on - strand at 462.267 kb on - strand at 462.267 kb on - strand at 462.267 kb on - strand at 462.267 kb on - strand at 462.271 kb on + strand at 462.272 kb on - strand at 462.272 kb on - strand at 462.299 kb on + strand at 462.299 kb on + strand at 462.415 kb on + strand at 462.415 kb on + strand at 462.415 kb on + strand at 462.416 kb on - strand at 462.419 kb on + strand at 462.555 kb on + strand, within DDA3937_RS02050 at 462.555 kb on + strand, within DDA3937_RS02050 at 462.670 kb on + strand at 462.670 kb on + strand at 462.670 kb on + strand at 462.670 kb on + strand at 462.670 kb on + strand at 462.670 kb on + strand at 462.670 kb on + strand at 462.670 kb on + strand at 462.670 kb on + strand at 462.671 kb on - strand at 462.671 kb on - strand at 462.671 kb on - strand at 462.671 kb on - strand at 462.671 kb on - strand at 462.671 kb on - strand at 462.671 kb on - strand at 462.671 kb on - strand at 462.671 kb on - strand at 462.674 kb on + strand at 462.674 kb on + strand at 462.674 kb on + strand at 462.674 kb on + strand at 462.675 kb on - strand at 462.675 kb on - strand at 462.675 kb on - strand at 462.675 kb on - strand at 462.680 kb on + strand at 462.680 kb on + strand at 462.681 kb on - strand at 462.693 kb on - strand at 462.693 kb on - strand at 462.696 kb on + strand at 462.697 kb on - strand at 462.697 kb on - strand at 462.697 kb on - strand at 462.699 kb on + strand at 462.700 kb on - strand at 462.717 kb on + strand at 462.717 kb on + strand at 462.717 kb on + strand at 462.717 kb on + strand at 462.717 kb on + strand at 462.717 kb on + strand at 462.717 kb on + strand at 462.717 kb on + strand at 462.717 kb on + strand at 462.717 kb on + strand at 462.717 kb on + strand at 462.717 kb on + strand at 462.717 kb on + strand at 462.718 kb on - strand at 462.718 kb on - strand at 462.718 kb on - strand at 462.718 kb on - strand at 462.718 kb on - strand at 462.718 kb on - strand at 462.718 kb on - strand at 462.718 kb on - strand at 462.722 kb on - strand at 462.722 kb on - strand at 462.722 kb on - strand at 462.724 kb on + strand at 462.725 kb on - strand at 462.739 kb on + strand at 462.739 kb on + strand at 462.742 kb on + strand at 462.743 kb on - strand at 462.743 kb on - strand at 462.749 kb on + strand at 462.749 kb on + strand at 462.749 kb on + strand at 462.749 kb on + strand at 462.749 kb on + strand at 462.750 kb on - strand at 462.750 kb on - strand at 462.750 kb on - strand at 462.750 kb on - strand at 462.750 kb on - strand at 462.753 kb on + strand at 462.759 kb on + strand at 462.759 kb on + strand at 462.839 kb on + strand at 462.839 kb on + strand at 462.840 kb on - strand at 462.840 kb on - strand at 462.840 kb on - strand at 462.840 kb on - strand at 462.915 kb on - strand at 462.922 kb on + strand at 462.928 kb on - strand at 462.928 kb on - strand at 462.928 kb on - strand at 462.928 kb on - strand at 462.928 kb on - strand at 462.963 kb on - strand at 462.963 kb on - strand at 462.990 kb on - strand at 462.990 kb on - strand at 463.065 kb on + strand at 463.065 kb on + strand at 463.083 kb on - strand at 463.092 kb on - strand at 463.092 kb on - strand at 463.095 kb on + strand at 463.096 kb on - strand at 463.106 kb on - strand at 463.106 kb on - strand at 463.155 kb on + strand at 463.156 kb on - strand at 463.192 kb on + strand, within DDA3937_RS02055 at 463.213 kb on - strand, within DDA3937_RS02055 at 463.214 kb on + strand, within DDA3937_RS02055 at 463.222 kb on + strand, within DDA3937_RS02055 at 463.240 kb on - strand, within DDA3937_RS02055 at 463.255 kb on + strand, within DDA3937_RS02055 at 463.255 kb on + strand, within DDA3937_RS02055 at 463.256 kb on - strand, within DDA3937_RS02055 at 463.256 kb on - strand, within DDA3937_RS02055 at 463.256 kb on - strand, within DDA3937_RS02055 at 463.256 kb on - strand, within DDA3937_RS02055 at 463.259 kb on + strand, within DDA3937_RS02055 at 463.259 kb on + strand, within DDA3937_RS02055 at 463.259 kb on + strand, within DDA3937_RS02055 at 463.259 kb on + strand, within DDA3937_RS02055 at 463.259 kb on + strand, within DDA3937_RS02055 at 463.259 kb on + strand, within DDA3937_RS02055 at 463.259 kb on + strand, within DDA3937_RS02055 at 463.260 kb on - strand, within DDA3937_RS02055 at 463.260 kb on - strand, within DDA3937_RS02055 at 463.260 kb on - strand, within DDA3937_RS02055 at 463.264 kb on - strand, within DDA3937_RS02055 at 463.295 kb on - strand, within DDA3937_RS02055 at 463.312 kb on + strand, within DDA3937_RS02055 at 463.312 kb on + strand, within DDA3937_RS02055 at 463.312 kb on + strand, within DDA3937_RS02055 at 463.313 kb on - strand, within DDA3937_RS02055 at 463.313 kb on - strand, within DDA3937_RS02055 at 463.432 kb on + strand, within DDA3937_RS02055 at 463.486 kb on - strand, within DDA3937_RS02055 at 463.504 kb on + strand at 463.504 kb on + strand at 463.505 kb on - strand at 463.547 kb on + strand at 463.548 kb on - strand at 463.564 kb on - strand at 463.571 kb on + strand at 463.580 kb on + strand at 463.581 kb on - strand at 463.583 kb on + strand at 463.583 kb on + strand at 463.583 kb on + strand at 463.598 kb on + strand at 463.629 kb on + strand, within DDA3937_RS02060 at 463.629 kb on + strand, within DDA3937_RS02060 at 463.629 kb on + strand, within DDA3937_RS02060 at 463.661 kb on + strand, within DDA3937_RS02060 at 463.661 kb on + strand, within DDA3937_RS02060 at 463.662 kb on - strand, within DDA3937_RS02060
Per-strain Table
Position Strand Gene LocusTag Fraction Atlantic remove 461,518 - DDA3937_RS02045 0.67 +0.6 461,518 - DDA3937_RS02045 0.67 -0.4 461,518 - DDA3937_RS02045 0.67 -0.9 461,518 - DDA3937_RS02045 0.67 +0.1 461,620 + DDA3937_RS02045 0.72 +1.1 461,621 - DDA3937_RS02045 0.72 -0.8 461,636 + DDA3937_RS02045 0.73 +0.3 461,636 + DDA3937_RS02045 0.73 +0.9 461,636 + DDA3937_RS02045 0.73 +0.7 461,637 - DDA3937_RS02045 0.73 -0.2 461,671 + DDA3937_RS02045 0.75 -1.1 461,749 + DDA3937_RS02045 0.78 -0.3 461,749 + DDA3937_RS02045 0.78 +0.1 461,749 + DDA3937_RS02045 0.78 -0.0 461,750 - DDA3937_RS02045 0.78 -1.0 461,750 - DDA3937_RS02045 0.78 +0.8 461,750 - DDA3937_RS02045 0.78 -0.1 461,750 - DDA3937_RS02045 0.78 +0.3 461,750 - DDA3937_RS02045 0.78 +0.2 461,834 + DDA3937_RS02045 0.83 -3.1 461,834 + DDA3937_RS02045 0.83 -0.0 461,859 - DDA3937_RS02045 0.84 -0.8 462,188 + +0.7 462,189 - -1.3 462,262 + +0.5 462,262 + -0.3 462,262 + +0.0 462,262 + -0.3 462,262 + -1.7 462,262 + +0.0 462,263 - -0.4 462,263 - -0.9 462,263 - -1.6 462,263 - -1.2 462,263 - +2.1 462,263 - +1.0 462,264 + -0.3 462,264 + -1.3 462,264 + -1.1 462,264 + +0.3 462,265 - -1.0 462,265 - +0.7 462,265 - -0.6 462,265 - -1.5 462,266 + +0.5 462,266 + -0.0 462,266 + -1.2 462,266 + +0.5 462,266 + +0.6 462,266 + +1.1 462,266 + -0.5 462,266 + -0.7 462,266 + -1.7 462,266 + +1.5 462,266 + +1.9 462,266 + +0.9 462,266 + -0.1 462,266 + +0.7 462,266 + +1.3 462,266 + -0.2 462,266 + -0.4 462,266 + -0.7 462,266 + +1.5 462,266 + -0.2 462,266 + -0.2 462,266 + -0.1 462,266 + -1.0 462,266 + +0.5 462,266 + -1.2 462,266 + -1.0 462,266 + -0.4 462,266 + +1.3 462,266 + +0.7 462,266 + -1.1 462,266 + +1.1 462,266 + -0.1 462,266 + +0.2 462,266 + -0.9 462,266 + -0.3 462,266 + -2.3 462,266 + -1.3 462,266 + +0.4 462,266 + -1.7 462,266 + +0.5 462,266 + +0.0 462,266 + -0.3 462,266 + +1.0 462,266 + -0.9 462,266 + +0.5 462,266 + +0.5 462,266 + +1.1 462,266 + -0.9 462,266 + -0.1 462,266 + +0.7 462,266 + +1.5 462,266 + +0.2 462,266 + -1.9 462,266 + -1.1 462,266 + +1.5 462,266 + +0.0 462,266 + -2.6 462,267 - -1.9 462,267 - -1.1 462,267 - -0.4 462,267 - -1.1 462,267 - -0.3 462,267 - -2.0 462,267 - +0.4 462,267 - -0.5 462,267 - +2.6 462,267 - -1.2 462,267 - +0.3 462,267 - -1.0 462,267 - -1.1 462,267 - +1.6 462,267 - -1.0 462,267 - +0.5 462,267 - -0.8 462,267 - -0.7 462,267 - -2.2 462,267 - -0.4 462,267 - -1.3 462,267 - +0.8 462,267 - -1.7 462,267 - -0.2 462,267 - +0.4 462,267 - -0.2 462,267 - +4.6 462,267 - -0.3 462,267 - -0.0 462,267 - +0.1 462,267 - -0.3 462,267 - +0.1 462,267 - -1.1 462,267 - -0.0 462,267 - -1.2 462,267 - +0.5 462,267 - +0.5 462,267 - -0.6 462,267 - -0.2 462,267 - +0.9 462,267 - +0.3 462,267 - -2.7 462,267 - -2.4 462,267 - -0.2 462,267 - -1.0 462,267 - -0.9 462,267 - -0.5 462,267 - -1.3 462,267 - -0.0 462,271 + +0.3 462,272 - -1.9 462,272 - +0.5 462,299 + -0.5 462,299 + -1.9 462,415 + -1.2 462,415 + -0.0 462,415 + -0.7 462,416 - +2.5 462,419 + -0.5 462,555 + DDA3937_RS02050 0.53 -1.8 462,555 + DDA3937_RS02050 0.53 -0.3 462,670 + +0.5 462,670 + +0.5 462,670 + +2.0 462,670 + -1.2 462,670 + +0.5 462,670 + +0.7 462,670 + -0.0 462,670 + +0.1 462,670 + -0.5 462,671 - +0.0 462,671 - -0.3 462,671 - -0.9 462,671 - +1.2 462,671 - -0.2 462,671 - -1.1 462,671 - +0.0 462,671 - +1.0 462,671 - +1.9 462,674 + -0.1 462,674 + +0.5 462,674 + +1.1 462,674 + -0.8 462,675 - -0.7 462,675 - -1.1 462,675 - -2.5 462,675 - -0.5 462,680 + -0.8 462,680 + +0.4 462,681 - -0.2 462,693 - -0.5 462,693 - -0.8 462,696 + -0.2 462,697 - +1.5 462,697 - -0.4 462,697 - -0.5 462,699 + -0.1 462,700 - +5.7 462,717 + -0.0 462,717 + -0.5 462,717 + -1.3 462,717 + -1.3 462,717 + -1.4 462,717 + -0.6 462,717 + -1.5 462,717 + -0.0 462,717 + +0.1 462,717 + -1.7 462,717 + -2.5 462,717 + +0.4 462,717 + +0.6 462,718 - -0.2 462,718 - -0.6 462,718 - +1.1 462,718 - -0.2 462,718 - -2.0 462,718 - -0.9 462,718 - -0.9 462,718 - -0.5 462,722 - +0.3 462,722 - -1.2 462,722 - -0.8 462,724 + -1.4 462,725 - +0.3 462,739 + -0.3 462,739 + -0.1 462,742 + +1.2 462,743 - +0.3 462,743 - +0.5 462,749 + +0.2 462,749 + +0.2 462,749 + -0.5 462,749 + -0.2 462,749 + -0.4 462,750 - +0.9 462,750 - +0.3 462,750 - -0.4 462,750 - +0.3 462,750 - +1.2 462,753 + +0.0 462,759 + +0.7 462,759 + +0.2 462,839 + -0.5 462,839 + -2.0 462,840 - +1.2 462,840 - -1.0 462,840 - +0.9 462,840 - +0.7 462,915 - +1.6 462,922 + +0.1 462,928 - -0.5 462,928 - -0.7 462,928 - -1.1 462,928 - -2.5 462,928 - -2.3 462,963 - -0.7 462,963 - +0.5 462,990 - +2.1 462,990 - +1.0 463,065 + -0.1 463,065 + +0.8 463,083 - +0.5 463,092 - -0.2 463,092 - +0.7 463,095 + -0.5 463,096 - +0.1 463,106 - +0.7 463,106 - -2.2 463,155 + -0.3 463,156 - -0.3 463,192 + DDA3937_RS02055 0.14 +0.9 463,213 - DDA3937_RS02055 0.19 -1.0 463,214 + DDA3937_RS02055 0.20 +0.1 463,222 + DDA3937_RS02055 0.22 -0.6 463,240 - DDA3937_RS02055 0.26 -1.0 463,255 + DDA3937_RS02055 0.30 -0.1 463,255 + DDA3937_RS02055 0.30 -0.5 463,256 - DDA3937_RS02055 0.30 -2.2 463,256 - DDA3937_RS02055 0.30 -3.7 463,256 - DDA3937_RS02055 0.30 -0.4 463,256 - DDA3937_RS02055 0.30 -0.5 463,259 + DDA3937_RS02055 0.31 -0.3 463,259 + DDA3937_RS02055 0.31 +1.4 463,259 + DDA3937_RS02055 0.31 -0.2 463,259 + DDA3937_RS02055 0.31 +0.0 463,259 + DDA3937_RS02055 0.31 -0.5 463,259 + DDA3937_RS02055 0.31 -0.9 463,259 + DDA3937_RS02055 0.31 +2.0 463,260 - DDA3937_RS02055 0.31 -1.7 463,260 - DDA3937_RS02055 0.31 -0.8 463,260 - DDA3937_RS02055 0.31 -0.8 463,264 - DDA3937_RS02055 0.32 -1.0 463,295 - DDA3937_RS02055 0.40 -1.6 463,312 + DDA3937_RS02055 0.44 -0.1 463,312 + DDA3937_RS02055 0.44 -1.1 463,312 + DDA3937_RS02055 0.44 +0.3 463,313 - DDA3937_RS02055 0.44 -0.5 463,313 - DDA3937_RS02055 0.44 -0.1 463,432 + DDA3937_RS02055 0.74 +0.5 463,486 - DDA3937_RS02055 0.87 -0.2 463,504 + -2.1 463,504 + +0.8 463,505 - -1.1 463,547 + -0.8 463,548 - +6.2 463,564 - -0.5 463,571 + +0.9 463,580 + +0.0 463,581 - -0.9 463,583 + -0.6 463,583 + +1.5 463,583 + +1.2 463,598 + +1.0 463,629 + DDA3937_RS02060 0.13 -0.2 463,629 + DDA3937_RS02060 0.13 +1.9 463,629 + DDA3937_RS02060 0.13 +0.3 463,661 + DDA3937_RS02060 0.20 -0.0 463,661 + DDA3937_RS02060 0.20 -1.2 463,662 - DDA3937_RS02060 0.20 -0.6
Or see this region's nucleotide sequence