Experiment: Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS01800 and DDA3937_RS01805 are separated by 466 nucleotides DDA3937_RS01805 and DDA3937_RS01810 are separated by 93 nucleotides DDA3937_RS01810 and DDA3937_RS01815 are separated by 184 nucleotides
DDA3937_RS01800: DDA3937_RS01800 - alcohol dehydrogenase, at 399,627 to 400,790
_RS01800
DDA3937_RS01805: DDA3937_RS01805 - AraC family transcriptional regulator, at 401,257 to 402,168
_RS01805
DDA3937_RS01810: DDA3937_RS01810 - DedA family protein, at 402,262 to 402,921
_RS01810
DDA3937_RS01815: DDA3937_RS01815 - cystathionine beta-lyase, at 403,106 to 404,299
_RS01815
Position (kb) 401
402
403 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5
6 at 400.462 kb on + strand, within DDA3937_RS01800 at 400.463 kb on - strand, within DDA3937_RS01800 at 400.463 kb on - strand at 400.614 kb on + strand, within DDA3937_RS01800 at 400.614 kb on + strand, within DDA3937_RS01800 at 400.614 kb on + strand, within DDA3937_RS01800 at 400.614 kb on + strand, within DDA3937_RS01800 at 400.614 kb on + strand, within DDA3937_RS01800 at 400.615 kb on - strand, within DDA3937_RS01800 at 400.684 kb on + strand at 400.684 kb on + strand at 400.684 kb on + strand at 400.684 kb on + strand at 400.684 kb on + strand at 400.685 kb on - strand at 400.685 kb on - strand at 400.685 kb on - strand at 400.685 kb on - strand at 400.769 kb on + strand at 400.796 kb on + strand at 400.796 kb on + strand at 400.796 kb on + strand at 400.796 kb on + strand at 400.797 kb on - strand at 400.797 kb on - strand at 400.797 kb on - strand at 400.797 kb on - strand at 400.807 kb on + strand at 400.807 kb on + strand at 400.807 kb on + strand at 400.808 kb on - strand at 400.808 kb on - strand at 400.808 kb on - strand at 400.808 kb on - strand at 400.840 kb on - strand at 400.840 kb on - strand at 400.863 kb on + strand at 400.863 kb on + strand at 400.864 kb on - strand at 400.866 kb on + strand at 400.866 kb on + strand at 400.866 kb on + strand at 400.866 kb on + strand at 400.867 kb on - strand at 400.872 kb on + strand at 400.872 kb on + strand at 400.872 kb on + strand at 400.872 kb on + strand at 400.872 kb on + strand at 400.873 kb on - strand at 400.873 kb on - strand at 400.873 kb on - strand at 400.873 kb on - strand at 400.873 kb on - strand at 400.873 kb on - strand at 400.873 kb on - strand at 400.879 kb on - strand at 400.918 kb on + strand at 400.918 kb on + strand at 400.919 kb on - strand at 400.955 kb on + strand at 400.956 kb on - strand at 401.001 kb on + strand at 401.066 kb on - strand at 401.080 kb on + strand at 401.080 kb on + strand at 401.080 kb on + strand at 401.081 kb on - strand at 401.081 kb on - strand at 401.081 kb on - strand at 401.081 kb on - strand at 401.081 kb on - strand at 401.082 kb on + strand at 401.082 kb on + strand at 401.082 kb on + strand at 401.119 kb on - strand at 401.166 kb on + strand at 401.167 kb on - strand at 401.207 kb on + strand at 401.216 kb on + strand at 401.217 kb on - strand at 401.217 kb on - strand at 401.217 kb on - strand at 401.217 kb on - strand at 401.218 kb on + strand at 401.218 kb on + strand at 401.218 kb on + strand at 401.218 kb on + strand at 401.218 kb on + strand at 401.218 kb on + strand at 401.218 kb on + strand at 401.218 kb on + strand at 401.218 kb on + strand at 401.218 kb on + strand at 401.218 kb on + strand at 401.218 kb on + strand at 401.218 kb on + strand at 401.218 kb on + strand at 401.218 kb on + strand at 401.218 kb on + strand at 401.218 kb on + strand at 401.218 kb on + strand at 401.218 kb on + strand at 401.218 kb on + strand at 401.218 kb on + strand at 401.218 kb on + strand at 401.218 kb on + strand at 401.218 kb on + strand at 401.218 kb on + strand at 401.218 kb on + strand at 401.218 kb on + strand at 401.218 kb on + strand at 401.218 kb on + strand at 401.218 kb on + strand at 401.218 kb on + strand at 401.218 kb on + strand at 401.219 kb on - strand at 401.219 kb on - strand at 401.219 kb on - strand at 401.219 kb on - strand at 401.219 kb on - strand at 401.219 kb on - strand at 401.219 kb on - strand at 401.219 kb on - strand at 401.219 kb on - strand at 401.219 kb on - strand at 401.219 kb on - strand at 401.219 kb on - strand at 401.219 kb on - strand at 401.219 kb on - strand at 401.219 kb on - strand at 401.219 kb on - strand at 401.219 kb on - strand at 401.219 kb on - strand at 401.219 kb on - strand at 401.219 kb on - strand at 401.219 kb on - strand at 401.219 kb on - strand at 401.219 kb on - strand at 401.219 kb on - strand at 401.219 kb on - strand at 401.219 kb on - strand at 401.219 kb on - strand at 401.219 kb on - strand at 401.219 kb on - strand at 401.219 kb on - strand at 401.219 kb on - strand at 401.219 kb on - strand at 401.219 kb on - strand at 401.219 kb on - strand at 401.219 kb on - strand at 401.219 kb on - strand at 401.219 kb on - strand at 401.219 kb on - strand at 401.219 kb on - strand at 401.240 kb on + strand at 401.243 kb on + strand at 401.257 kb on - strand at 401.305 kb on + strand at 401.305 kb on + strand at 401.305 kb on + strand at 401.305 kb on + strand at 401.306 kb on - strand at 401.306 kb on - strand at 401.306 kb on - strand at 401.359 kb on + strand, within DDA3937_RS01805 at 401.359 kb on + strand, within DDA3937_RS01805 at 401.360 kb on - strand, within DDA3937_RS01805 at 401.360 kb on - strand, within DDA3937_RS01805 at 401.360 kb on - strand, within DDA3937_RS01805 at 401.360 kb on - strand, within DDA3937_RS01805 at 401.395 kb on + strand, within DDA3937_RS01805 at 401.395 kb on + strand, within DDA3937_RS01805 at 401.395 kb on + strand, within DDA3937_RS01805 at 401.395 kb on + strand, within DDA3937_RS01805 at 401.395 kb on + strand, within DDA3937_RS01805 at 401.395 kb on + strand, within DDA3937_RS01805 at 401.396 kb on - strand, within DDA3937_RS01805 at 401.396 kb on - strand, within DDA3937_RS01805 at 401.440 kb on + strand, within DDA3937_RS01805 at 401.441 kb on - strand, within DDA3937_RS01805 at 401.441 kb on - strand, within DDA3937_RS01805 at 401.479 kb on + strand, within DDA3937_RS01805 at 401.479 kb on + strand, within DDA3937_RS01805 at 401.479 kb on + strand, within DDA3937_RS01805 at 401.479 kb on + strand, within DDA3937_RS01805 at 401.479 kb on + strand, within DDA3937_RS01805 at 401.479 kb on + strand, within DDA3937_RS01805 at 401.479 kb on + strand, within DDA3937_RS01805 at 401.479 kb on + strand, within DDA3937_RS01805 at 401.479 kb on + strand, within DDA3937_RS01805 at 401.480 kb on - strand, within DDA3937_RS01805 at 401.480 kb on - strand, within DDA3937_RS01805 at 401.569 kb on - strand, within DDA3937_RS01805 at 401.764 kb on + strand, within DDA3937_RS01805 at 401.764 kb on + strand, within DDA3937_RS01805 at 401.765 kb on - strand, within DDA3937_RS01805 at 401.765 kb on - strand, within DDA3937_RS01805 at 401.765 kb on - strand, within DDA3937_RS01805 at 401.854 kb on + strand, within DDA3937_RS01805 at 401.854 kb on + strand, within DDA3937_RS01805 at 401.854 kb on + strand, within DDA3937_RS01805 at 401.857 kb on - strand, within DDA3937_RS01805 at 401.866 kb on + strand, within DDA3937_RS01805 at 401.866 kb on + strand, within DDA3937_RS01805 at 401.866 kb on + strand, within DDA3937_RS01805 at 401.866 kb on + strand, within DDA3937_RS01805 at 401.869 kb on + strand, within DDA3937_RS01805 at 401.869 kb on + strand, within DDA3937_RS01805 at 401.870 kb on - strand, within DDA3937_RS01805 at 401.870 kb on - strand, within DDA3937_RS01805 at 401.870 kb on - strand, within DDA3937_RS01805 at 401.974 kb on + strand, within DDA3937_RS01805 at 401.974 kb on + strand, within DDA3937_RS01805 at 402.152 kb on + strand at 402.153 kb on - strand at 402.153 kb on - strand at 402.153 kb on - strand at 402.153 kb on - strand at 402.155 kb on + strand at 402.155 kb on + strand at 402.155 kb on + strand at 402.155 kb on + strand at 402.155 kb on + strand at 402.155 kb on + strand at 402.155 kb on + strand at 402.155 kb on + strand at 402.156 kb on - strand at 402.156 kb on - strand at 402.167 kb on - strand at 402.167 kb on - strand at 402.172 kb on + strand at 402.172 kb on + strand at 402.173 kb on - strand at 402.173 kb on - strand at 402.175 kb on + strand at 402.176 kb on - strand at 402.176 kb on - strand at 402.283 kb on - strand at 402.372 kb on - strand, within DDA3937_RS01810 at 402.372 kb on - strand, within DDA3937_RS01810 at 402.391 kb on - strand, within DDA3937_RS01810 at 402.414 kb on + strand, within DDA3937_RS01810 at 402.477 kb on + strand, within DDA3937_RS01810 at 402.477 kb on + strand, within DDA3937_RS01810 at 402.477 kb on + strand, within DDA3937_RS01810 at 402.477 kb on + strand, within DDA3937_RS01810 at 402.593 kb on + strand, within DDA3937_RS01810 at 402.613 kb on + strand, within DDA3937_RS01810 at 402.614 kb on - strand, within DDA3937_RS01810 at 402.636 kb on + strand, within DDA3937_RS01810 at 402.662 kb on + strand, within DDA3937_RS01810 at 402.663 kb on - strand, within DDA3937_RS01810 at 402.663 kb on - strand, within DDA3937_RS01810 at 402.663 kb on - strand, within DDA3937_RS01810 at 402.761 kb on - strand, within DDA3937_RS01810 at 402.836 kb on + strand, within DDA3937_RS01810 at 402.836 kb on + strand, within DDA3937_RS01810 at 402.836 kb on + strand, within DDA3937_RS01810 at 402.837 kb on - strand, within DDA3937_RS01810 at 402.837 kb on - strand, within DDA3937_RS01810 at 402.837 kb on - strand, within DDA3937_RS01810 at 402.837 kb on - strand, within DDA3937_RS01810 at 402.943 kb on + strand at 402.943 kb on + strand at 402.943 kb on + strand at 402.944 kb on - strand at 402.944 kb on - strand at 402.944 kb on - strand at 402.944 kb on - strand at 402.945 kb on + strand at 402.945 kb on + strand at 402.964 kb on - strand at 402.964 kb on - strand at 402.967 kb on + strand at 402.967 kb on + strand at 402.967 kb on + strand at 402.968 kb on - strand at 403.008 kb on + strand at 403.018 kb on - strand at 403.023 kb on + strand at 403.023 kb on + strand at 403.023 kb on + strand at 403.024 kb on - strand at 403.024 kb on - strand at 403.024 kb on - strand at 403.024 kb on - strand at 403.024 kb on - strand at 403.024 kb on - strand at 403.039 kb on - strand at 403.050 kb on + strand at 403.050 kb on + strand at 403.050 kb on + strand at 403.050 kb on + strand at 403.051 kb on - strand at 403.052 kb on + strand at 403.052 kb on + strand at 403.052 kb on + strand at 403.052 kb on + strand at 403.052 kb on + strand at 403.053 kb on - strand at 403.053 kb on - strand at 403.053 kb on - strand at 403.053 kb on - strand at 403.053 kb on - strand at 403.053 kb on - strand at 403.053 kb on - strand at 403.053 kb on - strand at 403.053 kb on - strand at 403.053 kb on - strand at 403.068 kb on + strand at 403.068 kb on + strand at 403.068 kb on + strand at 403.068 kb on + strand at 403.068 kb on + strand at 403.069 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Atlantic remove 400,462 + DDA3937_RS01800 0.72 +0.6 400,463 - DDA3937_RS01800 0.72 -1.9 400,463 - -0.1 400,614 + DDA3937_RS01800 0.85 -1.1 400,614 + DDA3937_RS01800 0.85 -1.9 400,614 + DDA3937_RS01800 0.85 -1.1 400,614 + DDA3937_RS01800 0.85 -0.0 400,614 + DDA3937_RS01800 0.85 +0.2 400,615 - DDA3937_RS01800 0.85 +0.8 400,684 + -0.8 400,684 + -0.9 400,684 + -0.9 400,684 + -0.2 400,684 + -0.6 400,685 - +0.1 400,685 - -0.0 400,685 - -0.6 400,685 - +0.5 400,769 + -0.7 400,796 + -0.6 400,796 + -0.4 400,796 + +0.3 400,796 + -0.5 400,797 - -1.0 400,797 - -1.1 400,797 - +0.7 400,797 - +0.2 400,807 + -0.1 400,807 + -0.9 400,807 + -0.4 400,808 - +1.8 400,808 - +1.8 400,808 - +0.1 400,808 - -0.9 400,840 - -1.3 400,840 - +0.3 400,863 + -1.2 400,863 + -2.0 400,864 - +0.3 400,866 + -1.3 400,866 + -1.3 400,866 + -0.1 400,866 + -0.5 400,867 - -1.0 400,872 + -0.0 400,872 + +3.6 400,872 + -0.7 400,872 + -2.2 400,872 + -3.2 400,873 - -1.0 400,873 - +0.3 400,873 - -0.1 400,873 - -0.9 400,873 - -0.3 400,873 - -0.3 400,873 - -1.5 400,879 - -1.9 400,918 + -1.9 400,918 + +2.7 400,919 - -2.6 400,955 + -0.0 400,956 - +2.0 401,001 + -0.9 401,066 - -1.7 401,080 + +0.3 401,080 + +0.8 401,080 + +0.3 401,081 - +4.1 401,081 - -0.3 401,081 - +1.5 401,081 - -0.5 401,081 - -0.4 401,082 + -2.1 401,082 + +0.9 401,082 + +0.5 401,119 - -0.8 401,166 + -1.5 401,167 - +0.5 401,207 + -1.3 401,216 + +0.1 401,217 - -1.3 401,217 - +0.2 401,217 - +0.5 401,217 - +0.8 401,218 + -1.9 401,218 + -0.9 401,218 + -1.1 401,218 + -0.3 401,218 + -0.4 401,218 + +1.5 401,218 + -0.8 401,218 + -1.9 401,218 + -2.0 401,218 + -2.2 401,218 + -1.1 401,218 + -1.9 401,218 + -1.1 401,218 + -2.6 401,218 + -1.4 401,218 + -1.4 401,218 + -0.0 401,218 + -2.9 401,218 + +0.5 401,218 + -0.9 401,218 + -1.2 401,218 + -1.1 401,218 + -0.5 401,218 + -1.3 401,218 + -0.9 401,218 + -0.5 401,218 + -0.1 401,218 + -0.1 401,218 + -0.8 401,218 + -0.9 401,218 + -0.6 401,218 + -0.9 401,219 - -0.9 401,219 - -0.4 401,219 - +0.3 401,219 - -0.2 401,219 - -0.3 401,219 - -1.1 401,219 - +0.3 401,219 - +0.5 401,219 - +0.1 401,219 - +0.4 401,219 - +0.0 401,219 - -0.0 401,219 - -0.3 401,219 - -0.9 401,219 - -2.2 401,219 - -4.2 401,219 - +1.3 401,219 - +0.8 401,219 - +1.6 401,219 - +0.5 401,219 - -0.9 401,219 - +0.8 401,219 - -0.3 401,219 - +0.1 401,219 - +0.6 401,219 - -0.4 401,219 - -0.5 401,219 - -1.7 401,219 - -0.1 401,219 - -0.1 401,219 - -0.1 401,219 - +2.3 401,219 - -2.0 401,219 - +0.8 401,219 - -0.9 401,219 - +0.0 401,219 - -0.9 401,219 - -1.1 401,219 - +0.4 401,240 + -0.2 401,243 + -0.5 401,257 - +0.5 401,305 + +0.4 401,305 + -1.8 401,305 + +0.4 401,305 + -0.2 401,306 - +1.0 401,306 - -0.8 401,306 - +0.4 401,359 + DDA3937_RS01805 0.11 +0.9 401,359 + DDA3937_RS01805 0.11 +0.9 401,360 - DDA3937_RS01805 0.11 +0.7 401,360 - DDA3937_RS01805 0.11 -1.9 401,360 - DDA3937_RS01805 0.11 -0.1 401,360 - DDA3937_RS01805 0.11 +0.3 401,395 + DDA3937_RS01805 0.15 -1.5 401,395 + DDA3937_RS01805 0.15 +2.2 401,395 + DDA3937_RS01805 0.15 -0.3 401,395 + DDA3937_RS01805 0.15 -2.0 401,395 + DDA3937_RS01805 0.15 -1.9 401,395 + DDA3937_RS01805 0.15 -0.4 401,396 - DDA3937_RS01805 0.15 +1.9 401,396 - DDA3937_RS01805 0.15 -0.7 401,440 + DDA3937_RS01805 0.20 +0.6 401,441 - DDA3937_RS01805 0.20 +0.8 401,441 - DDA3937_RS01805 0.20 +0.1 401,479 + DDA3937_RS01805 0.24 -1.5 401,479 + DDA3937_RS01805 0.24 -1.4 401,479 + DDA3937_RS01805 0.24 -2.2 401,479 + DDA3937_RS01805 0.24 -0.7 401,479 + DDA3937_RS01805 0.24 +0.5 401,479 + DDA3937_RS01805 0.24 +0.5 401,479 + DDA3937_RS01805 0.24 -2.4 401,479 + DDA3937_RS01805 0.24 -1.3 401,479 + DDA3937_RS01805 0.24 -0.7 401,480 - DDA3937_RS01805 0.24 +0.3 401,480 - DDA3937_RS01805 0.24 +2.3 401,569 - DDA3937_RS01805 0.34 -1.7 401,764 + DDA3937_RS01805 0.56 +0.9 401,764 + DDA3937_RS01805 0.56 +0.9 401,765 - DDA3937_RS01805 0.56 -1.1 401,765 - DDA3937_RS01805 0.56 +0.1 401,765 - DDA3937_RS01805 0.56 -0.9 401,854 + DDA3937_RS01805 0.65 -0.9 401,854 + DDA3937_RS01805 0.65 +0.3 401,854 + DDA3937_RS01805 0.65 -0.1 401,857 - DDA3937_RS01805 0.66 -2.0 401,866 + DDA3937_RS01805 0.67 +0.0 401,866 + DDA3937_RS01805 0.67 -0.2 401,866 + DDA3937_RS01805 0.67 -2.4 401,866 + DDA3937_RS01805 0.67 -0.1 401,869 + DDA3937_RS01805 0.67 +0.9 401,869 + DDA3937_RS01805 0.67 -0.9 401,870 - DDA3937_RS01805 0.67 -1.7 401,870 - DDA3937_RS01805 0.67 +2.9 401,870 - DDA3937_RS01805 0.67 +1.2 401,974 + DDA3937_RS01805 0.79 +1.5 401,974 + DDA3937_RS01805 0.79 -0.9 402,152 + -0.5 402,153 - -0.9 402,153 - -1.4 402,153 - -0.5 402,153 - -0.6 402,155 + -0.6 402,155 + +0.6 402,155 + -2.3 402,155 + -0.2 402,155 + -0.3 402,155 + +0.4 402,155 + -1.4 402,155 + -0.1 402,156 - -0.5 402,156 - -0.7 402,167 - -0.9 402,167 - +1.6 402,172 + -1.1 402,172 + +2.8 402,173 - +1.2 402,173 - +1.5 402,175 + -0.6 402,176 - +0.7 402,176 - +1.0 402,283 - -0.4 402,372 - DDA3937_RS01810 0.17 -0.5 402,372 - DDA3937_RS01810 0.17 -1.4 402,391 - DDA3937_RS01810 0.20 -2.0 402,414 + DDA3937_RS01810 0.23 -2.0 402,477 + DDA3937_RS01810 0.33 +0.5 402,477 + DDA3937_RS01810 0.33 +1.0 402,477 + DDA3937_RS01810 0.33 -1.0 402,477 + DDA3937_RS01810 0.33 -1.1 402,593 + DDA3937_RS01810 0.50 -1.4 402,613 + DDA3937_RS01810 0.53 -2.1 402,614 - DDA3937_RS01810 0.53 -1.1 402,636 + DDA3937_RS01810 0.57 -1.5 402,662 + DDA3937_RS01810 0.61 -0.6 402,663 - DDA3937_RS01810 0.61 -2.2 402,663 - DDA3937_RS01810 0.61 -0.1 402,663 - DDA3937_RS01810 0.61 -0.4 402,761 - DDA3937_RS01810 0.76 -1.4 402,836 + DDA3937_RS01810 0.87 -1.5 402,836 + DDA3937_RS01810 0.87 -0.7 402,836 + DDA3937_RS01810 0.87 -2.6 402,837 - DDA3937_RS01810 0.87 -1.9 402,837 - DDA3937_RS01810 0.87 -1.3 402,837 - DDA3937_RS01810 0.87 -0.8 402,837 - DDA3937_RS01810 0.87 -1.4 402,943 + -1.6 402,943 + +1.3 402,943 + +0.3 402,944 - +0.2 402,944 - -1.9 402,944 - +0.9 402,944 - -0.4 402,945 + -0.7 402,945 + +0.1 402,964 - -2.0 402,964 - -1.4 402,967 + +1.0 402,967 + +1.3 402,967 + +0.1 402,968 - -0.1 403,008 + -0.1 403,018 - +6.3 403,023 + +0.2 403,023 + -1.1 403,023 + -1.1 403,024 - +0.4 403,024 - -0.7 403,024 - -0.0 403,024 - +0.5 403,024 - -0.1 403,024 - -1.5 403,039 - +0.5 403,050 + -0.2 403,050 + -1.5 403,050 + -0.9 403,050 + -0.1 403,051 - +2.0 403,052 + -0.4 403,052 + -0.7 403,052 + -1.6 403,052 + +0.9 403,052 + -0.4 403,053 - -1.1 403,053 - -0.1 403,053 - -2.5 403,053 - +1.4 403,053 - -1.1 403,053 - +0.5 403,053 - -0.1 403,053 - +0.5 403,053 - +0.1 403,053 - -0.2 403,068 + -1.0 403,068 + -0.2 403,068 + -0.8 403,068 + -0.1 403,068 + -0.8 403,069 - +0.9
Or see this region's nucleotide sequence