Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS01760

Experiment: Atlantic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS01755 and DDA3937_RS01760 overlap by 1 nucleotidesDDA3937_RS01760 and DDA3937_RS01765 are separated by 186 nucleotides DDA3937_RS01755: DDA3937_RS01755 - 3',5'-cyclic-AMP phosphodiesterase, at 388,465 to 389,292 _RS01755 DDA3937_RS01760: DDA3937_RS01760 - esterase YqiA, at 389,292 to 389,873 _RS01760 DDA3937_RS01765: DDA3937_RS01765 - DNA topoisomerase IV subunit B, at 390,060 to 391,955 _RS01765 Position (kb) 389 390Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 388.353 kb on - strandat 388.410 kb on + strandat 388.410 kb on + strandat 388.411 kb on - strandat 388.419 kb on + strandat 388.419 kb on + strandat 388.420 kb on - strandat 388.420 kb on - strandat 388.420 kb on - strandat 388.420 kb on - strandat 388.421 kb on + strandat 388.421 kb on + strandat 388.421 kb on + strandat 388.422 kb on - strandat 388.422 kb on - strandat 388.422 kb on - strandat 388.422 kb on - strandat 388.422 kb on - strandat 388.422 kb on - strandat 388.422 kb on - strandat 388.422 kb on - strandat 388.422 kb on - strandat 388.435 kb on - strandat 388.462 kb on + strandat 388.462 kb on + strandat 388.462 kb on + strandat 388.462 kb on + strandat 388.462 kb on + strandat 388.462 kb on + strandat 388.462 kb on + strandat 388.463 kb on - strandat 388.463 kb on - strandat 388.463 kb on - strandat 388.463 kb on - strandat 388.463 kb on - strandat 388.463 kb on - strandat 388.518 kb on - strandat 388.523 kb on + strandat 388.524 kb on - strandat 388.524 kb on - strandat 388.524 kb on - strandat 388.524 kb on - strandat 388.530 kb on + strandat 388.531 kb on - strandat 388.575 kb on + strand, within DDA3937_RS01755at 388.575 kb on + strand, within DDA3937_RS01755at 388.575 kb on + strand, within DDA3937_RS01755at 388.576 kb on - strand, within DDA3937_RS01755at 388.576 kb on - strand, within DDA3937_RS01755at 388.576 kb on - strand, within DDA3937_RS01755at 388.576 kb on - strandat 388.576 kb on - strand, within DDA3937_RS01755at 388.576 kb on - strand, within DDA3937_RS01755at 388.576 kb on - strand, within DDA3937_RS01755at 388.579 kb on + strand, within DDA3937_RS01755at 388.579 kb on + strand, within DDA3937_RS01755at 388.588 kb on + strand, within DDA3937_RS01755at 388.589 kb on - strand, within DDA3937_RS01755at 388.642 kb on - strand, within DDA3937_RS01755at 388.671 kb on + strand, within DDA3937_RS01755at 388.671 kb on + strand, within DDA3937_RS01755at 388.672 kb on - strand, within DDA3937_RS01755at 388.684 kb on + strand, within DDA3937_RS01755at 388.684 kb on + strand, within DDA3937_RS01755at 388.684 kb on + strand, within DDA3937_RS01755at 388.684 kb on + strand, within DDA3937_RS01755at 388.685 kb on - strand, within DDA3937_RS01755at 388.685 kb on - strand, within DDA3937_RS01755at 388.685 kb on - strand, within DDA3937_RS01755at 388.685 kb on - strand, within DDA3937_RS01755at 388.705 kb on - strand, within DDA3937_RS01755at 388.717 kb on - strand, within DDA3937_RS01755at 388.936 kb on + strand, within DDA3937_RS01755at 388.938 kb on + strand, within DDA3937_RS01755at 388.938 kb on + strand, within DDA3937_RS01755at 388.938 kb on + strand, within DDA3937_RS01755at 388.939 kb on - strand, within DDA3937_RS01755at 388.939 kb on - strand, within DDA3937_RS01755at 388.939 kb on - strand, within DDA3937_RS01755at 388.939 kb on - strand, within DDA3937_RS01755at 388.980 kb on + strand, within DDA3937_RS01755at 388.981 kb on - strand, within DDA3937_RS01755at 389.073 kb on + strand, within DDA3937_RS01755at 389.073 kb on + strand, within DDA3937_RS01755at 389.073 kb on + strand, within DDA3937_RS01755at 389.073 kb on + strand, within DDA3937_RS01755at 389.073 kb on + strand, within DDA3937_RS01755at 389.074 kb on - strand, within DDA3937_RS01755at 389.074 kb on - strand, within DDA3937_RS01755at 389.074 kb on - strand, within DDA3937_RS01755at 389.074 kb on - strand, within DDA3937_RS01755at 389.166 kb on + strand, within DDA3937_RS01755at 389.166 kb on + strand, within DDA3937_RS01755at 389.166 kb on + strand, within DDA3937_RS01755at 389.166 kb on + strand, within DDA3937_RS01755at 389.167 kb on - strand, within DDA3937_RS01755at 389.167 kb on - strand, within DDA3937_RS01755at 389.175 kb on + strand, within DDA3937_RS01755at 389.175 kb on + strand, within DDA3937_RS01755at 389.175 kb on + strand, within DDA3937_RS01755at 389.175 kb on + strand, within DDA3937_RS01755at 389.176 kb on - strand, within DDA3937_RS01755at 389.197 kb on + strand, within DDA3937_RS01755at 389.225 kb on + strandat 389.226 kb on - strandat 389.271 kb on + strandat 389.271 kb on + strandat 389.307 kb on + strandat 389.308 kb on - strandat 389.308 kb on - strandat 389.393 kb on + strand, within DDA3937_RS01760at 389.393 kb on + strand, within DDA3937_RS01760at 389.393 kb on + strand, within DDA3937_RS01760at 389.394 kb on - strand, within DDA3937_RS01760at 389.394 kb on - strand, within DDA3937_RS01760at 389.394 kb on - strand, within DDA3937_RS01760at 389.511 kb on + strand, within DDA3937_RS01760at 389.512 kb on - strand, within DDA3937_RS01760at 389.512 kb on - strand, within DDA3937_RS01760at 389.577 kb on + strand, within DDA3937_RS01760at 389.578 kb on - strand, within DDA3937_RS01760at 389.620 kb on - strand, within DDA3937_RS01760at 389.634 kb on + strand, within DDA3937_RS01760at 389.634 kb on + strand, within DDA3937_RS01760at 389.634 kb on + strand, within DDA3937_RS01760at 389.634 kb on + strand, within DDA3937_RS01760at 389.634 kb on + strand, within DDA3937_RS01760at 389.634 kb on + strand, within DDA3937_RS01760at 389.634 kb on + strand, within DDA3937_RS01760at 389.634 kb on + strand, within DDA3937_RS01760at 389.634 kb on + strand, within DDA3937_RS01760at 389.634 kb on + strand, within DDA3937_RS01760at 389.634 kb on + strand, within DDA3937_RS01760at 389.635 kb on - strand, within DDA3937_RS01760at 389.635 kb on - strand, within DDA3937_RS01760at 389.635 kb on - strand, within DDA3937_RS01760at 389.635 kb on - strand, within DDA3937_RS01760at 389.635 kb on - strand, within DDA3937_RS01760at 389.635 kb on - strand, within DDA3937_RS01760at 389.635 kb on - strand, within DDA3937_RS01760at 389.635 kb on - strand, within DDA3937_RS01760at 389.635 kb on - strand, within DDA3937_RS01760at 389.635 kb on - strand, within DDA3937_RS01760at 389.635 kb on - strand, within DDA3937_RS01760at 389.635 kb on - strand, within DDA3937_RS01760at 389.635 kb on - strand, within DDA3937_RS01760at 389.635 kb on - strand, within DDA3937_RS01760at 389.635 kb on - strand, within DDA3937_RS01760at 389.642 kb on - strand, within DDA3937_RS01760at 389.658 kb on + strand, within DDA3937_RS01760at 389.658 kb on + strand, within DDA3937_RS01760at 389.658 kb on + strand, within DDA3937_RS01760at 389.658 kb on + strand, within DDA3937_RS01760at 389.659 kb on - strand, within DDA3937_RS01760at 389.745 kb on + strand, within DDA3937_RS01760at 389.745 kb on + strand, within DDA3937_RS01760at 389.763 kb on + strand, within DDA3937_RS01760at 389.763 kb on + strand, within DDA3937_RS01760at 389.764 kb on - strand, within DDA3937_RS01760at 389.766 kb on + strand, within DDA3937_RS01760at 389.766 kb on + strand, within DDA3937_RS01760at 389.766 kb on + strand, within DDA3937_RS01760at 389.767 kb on - strand, within DDA3937_RS01760at 389.767 kb on - strand, within DDA3937_RS01760at 389.767 kb on - strand, within DDA3937_RS01760at 389.767 kb on - strand, within DDA3937_RS01760at 389.767 kb on - strand, within DDA3937_RS01760at 389.801 kb on + strand, within DDA3937_RS01760at 389.829 kb on + strandat 389.830 kb on - strandat 389.830 kb on - strandat 389.830 kb on - strandat 389.931 kb on - strandat 389.955 kb on + strandat 389.955 kb on + strandat 390.006 kb on + strandat 390.006 kb on + strandat 390.006 kb on + strandat 390.007 kb on - strandat 390.007 kb on - strandat 390.007 kb on - strandat 390.007 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Atlantic
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388,353 - +0.7
388,410 + +1.6
388,410 + -2.8
388,411 - +0.4
388,419 + +0.1
388,419 + -1.4
388,420 - +0.6
388,420 - -0.1
388,420 - +1.4
388,420 - -0.5
388,421 + +1.5
388,421 + -0.7
388,421 + -0.6
388,422 - -0.3
388,422 - -0.7
388,422 - +0.2
388,422 - -0.7
388,422 - -0.3
388,422 - -1.3
388,422 - +0.3
388,422 - +0.3
388,422 - +0.4
388,435 - +0.1
388,462 + +0.1
388,462 + +0.1
388,462 + -0.2
388,462 + -0.4
388,462 + -2.1
388,462 + +2.9
388,462 + -0.9
388,463 - +4.7
388,463 - -0.5
388,463 - -0.7
388,463 - -0.3
388,463 - -1.1
388,463 - -0.4
388,518 - -0.6
388,523 + -0.5
388,524 - +0.2
388,524 - -0.3
388,524 - +0.4
388,524 - -1.2
388,530 + -0.0
388,531 - -0.6
388,575 + DDA3937_RS01755 0.13 -0.8
388,575 + DDA3937_RS01755 0.13 -0.4
388,575 + DDA3937_RS01755 0.13 -1.9
388,576 - DDA3937_RS01755 0.13 -0.3
388,576 - DDA3937_RS01755 0.13 -0.7
388,576 - DDA3937_RS01755 0.13 -1.0
388,576 - -0.9
388,576 - DDA3937_RS01755 0.13 -1.9
388,576 - DDA3937_RS01755 0.13 -0.3
388,576 - DDA3937_RS01755 0.13 -2.2
388,579 + DDA3937_RS01755 0.14 -1.9
388,579 + DDA3937_RS01755 0.14 -0.1
388,588 + DDA3937_RS01755 0.15 -0.5
388,589 - DDA3937_RS01755 0.15 +0.5
388,642 - DDA3937_RS01755 0.21 +1.0
388,671 + DDA3937_RS01755 0.25 +0.6
388,671 + DDA3937_RS01755 0.25 -0.3
388,672 - DDA3937_RS01755 0.25 -0.1
388,684 + DDA3937_RS01755 0.26 -0.0
388,684 + DDA3937_RS01755 0.26 +1.6
388,684 + DDA3937_RS01755 0.26 -0.8
388,684 + DDA3937_RS01755 0.26 +0.1
388,685 - DDA3937_RS01755 0.27 -1.1
388,685 - DDA3937_RS01755 0.27 +0.7
388,685 - DDA3937_RS01755 0.27 +1.1
388,685 - DDA3937_RS01755 0.27 +0.0
388,705 - DDA3937_RS01755 0.29 -0.0
388,717 - DDA3937_RS01755 0.30 -0.2
388,936 + DDA3937_RS01755 0.57 -0.8
388,938 + DDA3937_RS01755 0.57 -2.0
388,938 + DDA3937_RS01755 0.57 +0.4
388,938 + DDA3937_RS01755 0.57 +1.6
388,939 - DDA3937_RS01755 0.57 -0.2
388,939 - DDA3937_RS01755 0.57 +0.0
388,939 - DDA3937_RS01755 0.57 +0.7
388,939 - DDA3937_RS01755 0.57 -0.1
388,980 + DDA3937_RS01755 0.62 -2.4
388,981 - DDA3937_RS01755 0.62 +0.5
389,073 + DDA3937_RS01755 0.73 +0.7
389,073 + DDA3937_RS01755 0.73 +0.9
389,073 + DDA3937_RS01755 0.73 +0.5
389,073 + DDA3937_RS01755 0.73 -1.4
389,073 + DDA3937_RS01755 0.73 -0.3
389,074 - DDA3937_RS01755 0.74 +0.6
389,074 - DDA3937_RS01755 0.74 -0.5
389,074 - DDA3937_RS01755 0.74 +1.0
389,074 - DDA3937_RS01755 0.74 -0.7
389,166 + DDA3937_RS01755 0.85 +0.9
389,166 + DDA3937_RS01755 0.85 -1.3
389,166 + DDA3937_RS01755 0.85 -0.5
389,166 + DDA3937_RS01755 0.85 +0.1
389,167 - DDA3937_RS01755 0.85 +0.4
389,167 - DDA3937_RS01755 0.85 -1.3
389,175 + DDA3937_RS01755 0.86 -0.3
389,175 + DDA3937_RS01755 0.86 -0.8
389,175 + DDA3937_RS01755 0.86 +0.5
389,175 + DDA3937_RS01755 0.86 +0.2
389,176 - DDA3937_RS01755 0.86 -2.7
389,197 + DDA3937_RS01755 0.88 -0.9
389,225 + -1.7
389,226 - -0.6
389,271 + -0.1
389,271 + +3.9
389,307 + -0.5
389,308 - -1.2
389,308 - -2.1
389,393 + DDA3937_RS01760 0.17 -1.9
389,393 + DDA3937_RS01760 0.17 -1.0
389,393 + DDA3937_RS01760 0.17 -0.6
389,394 - DDA3937_RS01760 0.18 +0.1
389,394 - DDA3937_RS01760 0.18 -2.5
389,394 - DDA3937_RS01760 0.18 -0.7
389,511 + DDA3937_RS01760 0.38 -2.2
389,512 - DDA3937_RS01760 0.38 -0.2
389,512 - DDA3937_RS01760 0.38 -3.2
389,577 + DDA3937_RS01760 0.49 -0.5
389,578 - DDA3937_RS01760 0.49 -1.2
389,620 - DDA3937_RS01760 0.56 -0.3
389,634 + DDA3937_RS01760 0.59 -2.5
389,634 + DDA3937_RS01760 0.59 -0.1
389,634 + DDA3937_RS01760 0.59 -1.1
389,634 + DDA3937_RS01760 0.59 +1.0
389,634 + DDA3937_RS01760 0.59 -0.3
389,634 + DDA3937_RS01760 0.59 -0.9
389,634 + DDA3937_RS01760 0.59 -0.5
389,634 + DDA3937_RS01760 0.59 +0.3
389,634 + DDA3937_RS01760 0.59 -1.9
389,634 + DDA3937_RS01760 0.59 -1.3
389,634 + DDA3937_RS01760 0.59 +0.2
389,635 - DDA3937_RS01760 0.59 -0.6
389,635 - DDA3937_RS01760 0.59 -1.9
389,635 - DDA3937_RS01760 0.59 -0.1
389,635 - DDA3937_RS01760 0.59 -0.2
389,635 - DDA3937_RS01760 0.59 -1.1
389,635 - DDA3937_RS01760 0.59 -1.1
389,635 - DDA3937_RS01760 0.59 +1.0
389,635 - DDA3937_RS01760 0.59 -0.9
389,635 - DDA3937_RS01760 0.59 -0.3
389,635 - DDA3937_RS01760 0.59 +0.5
389,635 - DDA3937_RS01760 0.59 -0.3
389,635 - DDA3937_RS01760 0.59 +0.5
389,635 - DDA3937_RS01760 0.59 +2.3
389,635 - DDA3937_RS01760 0.59 +0.4
389,635 - DDA3937_RS01760 0.59 -1.5
389,642 - DDA3937_RS01760 0.60 +0.1
389,658 + DDA3937_RS01760 0.63 -0.3
389,658 + DDA3937_RS01760 0.63 -2.0
389,658 + DDA3937_RS01760 0.63 +1.1
389,658 + DDA3937_RS01760 0.63 -2.0
389,659 - DDA3937_RS01760 0.63 -0.7
389,745 + DDA3937_RS01760 0.78 -1.4
389,745 + DDA3937_RS01760 0.78 -2.5
389,763 + DDA3937_RS01760 0.81 -2.1
389,763 + DDA3937_RS01760 0.81 -0.7
389,764 - DDA3937_RS01760 0.81 -0.9
389,766 + DDA3937_RS01760 0.81 -1.2
389,766 + DDA3937_RS01760 0.81 +0.4
389,766 + DDA3937_RS01760 0.81 -1.1
389,767 - DDA3937_RS01760 0.82 -1.4
389,767 - DDA3937_RS01760 0.82 -1.3
389,767 - DDA3937_RS01760 0.82 -1.9
389,767 - DDA3937_RS01760 0.82 -0.3
389,767 - DDA3937_RS01760 0.82 +0.5
389,801 + DDA3937_RS01760 0.87 -0.5
389,829 + -0.5
389,830 - +0.6
389,830 - -0.8
389,830 - +1.5
389,931 - -0.8
389,955 + -0.1
389,955 + +0.1
390,006 + -0.8
390,006 + +0.1
390,006 + -1.5
390,007 - -0.1
390,007 - -1.2
390,007 - -2.1
390,007 - +0.1

Or see this region's nucleotide sequence