Experiment: Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS01625 and DDA3937_RS01630 are separated by 15 nucleotides DDA3937_RS01630 and DDA3937_RS01635 are separated by 297 nucleotides DDA3937_RS01635 and DDA3937_RS01640 overlap by 8 nucleotides
DDA3937_RS01625: DDA3937_RS01625 - 50S ribosomal protein L13, at 358,037 to 358,465
_RS01625
DDA3937_RS01630: DDA3937_RS01630 - 30S ribosomal protein S9, at 358,481 to 358,873
_RS01630
DDA3937_RS01635: DDA3937_RS01635 - TetR/AcrR family transcriptional regulator, at 359,171 to 359,797
_RS01635
DDA3937_RS01640: DDA3937_RS01640 - multidrug effflux MFS transporter, at 359,790 to 361,043
_RS01640
Position (kb) 359
360 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 358.986 kb on + strand at 359.017 kb on + strand at 359.017 kb on + strand at 359.017 kb on + strand at 359.025 kb on + strand at 359.039 kb on + strand at 359.039 kb on + strand at 359.039 kb on + strand at 359.039 kb on + strand at 359.040 kb on - strand at 359.060 kb on + strand at 359.061 kb on - strand at 359.061 kb on - strand at 359.061 kb on - strand at 359.061 kb on - strand at 359.063 kb on + strand at 359.063 kb on + strand at 359.064 kb on - strand at 359.064 kb on - strand at 359.064 kb on - strand at 359.064 kb on - strand at 359.109 kb on + strand at 359.109 kb on + strand at 359.110 kb on - strand at 359.110 kb on - strand at 359.110 kb on - strand at 359.131 kb on + strand at 359.131 kb on + strand at 359.156 kb on + strand at 359.241 kb on - strand, within DDA3937_RS01635 at 359.257 kb on + strand, within DDA3937_RS01635 at 359.318 kb on - strand, within DDA3937_RS01635 at 359.328 kb on + strand, within DDA3937_RS01635 at 359.332 kb on + strand, within DDA3937_RS01635 at 359.332 kb on + strand, within DDA3937_RS01635 at 359.332 kb on + strand, within DDA3937_RS01635 at 359.332 kb on + strand, within DDA3937_RS01635 at 359.333 kb on - strand, within DDA3937_RS01635 at 359.333 kb on - strand, within DDA3937_RS01635 at 359.333 kb on - strand, within DDA3937_RS01635 at 359.333 kb on - strand, within DDA3937_RS01635 at 359.333 kb on - strand, within DDA3937_RS01635 at 359.350 kb on + strand, within DDA3937_RS01635 at 359.350 kb on + strand, within DDA3937_RS01635 at 359.350 kb on + strand, within DDA3937_RS01635 at 359.351 kb on - strand, within DDA3937_RS01635 at 359.351 kb on - strand, within DDA3937_RS01635 at 359.427 kb on - strand, within DDA3937_RS01635 at 359.479 kb on - strand, within DDA3937_RS01635 at 359.481 kb on + strand, within DDA3937_RS01635 at 359.481 kb on + strand, within DDA3937_RS01635 at 359.481 kb on + strand, within DDA3937_RS01635 at 359.511 kb on + strand, within DDA3937_RS01635 at 359.512 kb on - strand, within DDA3937_RS01635 at 359.514 kb on - strand, within DDA3937_RS01635 at 359.543 kb on + strand, within DDA3937_RS01635 at 359.556 kb on + strand, within DDA3937_RS01635 at 359.556 kb on + strand, within DDA3937_RS01635 at 359.556 kb on + strand, within DDA3937_RS01635 at 359.575 kb on + strand, within DDA3937_RS01635 at 359.576 kb on - strand, within DDA3937_RS01635 at 359.576 kb on - strand, within DDA3937_RS01635 at 359.576 kb on - strand, within DDA3937_RS01635 at 359.622 kb on + strand, within DDA3937_RS01635 at 359.622 kb on + strand, within DDA3937_RS01635 at 359.623 kb on - strand, within DDA3937_RS01635 at 359.623 kb on - strand, within DDA3937_RS01635 at 359.623 kb on - strand, within DDA3937_RS01635 at 359.642 kb on + strand, within DDA3937_RS01635 at 359.642 kb on + strand, within DDA3937_RS01635 at 359.642 kb on + strand, within DDA3937_RS01635 at 359.643 kb on - strand, within DDA3937_RS01635 at 359.740 kb on + strand at 359.740 kb on + strand at 359.741 kb on - strand at 359.802 kb on + strand at 359.803 kb on - strand at 359.829 kb on + strand at 359.829 kb on + strand at 359.829 kb on + strand at 359.830 kb on - strand at 359.830 kb on - strand at 359.830 kb on - strand at 359.830 kb on - strand at 359.830 kb on - strand at 359.843 kb on - strand at 359.843 kb on - strand at 359.843 kb on - strand at 359.873 kb on + strand at 359.873 kb on + strand at 359.873 kb on + strand at 359.881 kb on + strand at 359.889 kb on + strand at 359.889 kb on + strand at 359.889 kb on + strand at 359.889 kb on + strand at 359.889 kb on + strand at 359.889 kb on + strand at 359.889 kb on + strand at 359.889 kb on + strand at 359.889 kb on + strand at 359.889 kb on + strand at 359.890 kb on - strand at 359.890 kb on - strand at 359.890 kb on - strand at 359.890 kb on - strand at 359.890 kb on - strand at 359.890 kb on - strand at 359.890 kb on - strand at 359.890 kb on - strand at 359.894 kb on - strand at 359.963 kb on - strand, within DDA3937_RS01640 at 360.018 kb on + strand, within DDA3937_RS01640 at 360.030 kb on - strand, within DDA3937_RS01640 at 360.030 kb on - strand, within DDA3937_RS01640 at 360.060 kb on - strand, within DDA3937_RS01640 at 360.097 kb on + strand, within DDA3937_RS01640 at 360.098 kb on - strand, within DDA3937_RS01640 at 360.098 kb on - strand, within DDA3937_RS01640 at 360.184 kb on - strand, within DDA3937_RS01640 at 360.206 kb on + strand, within DDA3937_RS01640 at 360.207 kb on - strand, within DDA3937_RS01640 at 360.207 kb on - strand, within DDA3937_RS01640 at 360.260 kb on - strand, within DDA3937_RS01640 at 360.270 kb on + strand, within DDA3937_RS01640 at 360.270 kb on + strand, within DDA3937_RS01640 at 360.270 kb on + strand, within DDA3937_RS01640 at 360.270 kb on + strand, within DDA3937_RS01640 at 360.271 kb on - strand, within DDA3937_RS01640 at 360.349 kb on + strand, within DDA3937_RS01640 at 360.349 kb on + strand, within DDA3937_RS01640 at 360.435 kb on + strand, within DDA3937_RS01640 at 360.436 kb on - strand, within DDA3937_RS01640 at 360.436 kb on - strand, within DDA3937_RS01640 at 360.436 kb on - strand, within DDA3937_RS01640 at 360.436 kb on - strand, within DDA3937_RS01640 at 360.471 kb on + strand, within DDA3937_RS01640 at 360.471 kb on + strand, within DDA3937_RS01640 at 360.471 kb on + strand, within DDA3937_RS01640 at 360.472 kb on - strand, within DDA3937_RS01640 at 360.472 kb on - strand, within DDA3937_RS01640 at 360.472 kb on - strand, within DDA3937_RS01640 at 360.472 kb on - strand, within DDA3937_RS01640 at 360.472 kb on - strand, within DDA3937_RS01640 at 360.473 kb on + strand, within DDA3937_RS01640 at 360.473 kb on + strand, within DDA3937_RS01640 at 360.473 kb on + strand, within DDA3937_RS01640 at 360.473 kb on + strand, within DDA3937_RS01640 at 360.474 kb on - strand, within DDA3937_RS01640 at 360.474 kb on - strand, within DDA3937_RS01640 at 360.513 kb on + strand, within DDA3937_RS01640 at 360.513 kb on + strand, within DDA3937_RS01640 at 360.513 kb on + strand, within DDA3937_RS01640 at 360.514 kb on - strand, within DDA3937_RS01640 at 360.514 kb on - strand, within DDA3937_RS01640 at 360.514 kb on - strand, within DDA3937_RS01640 at 360.514 kb on - strand, within DDA3937_RS01640 at 360.514 kb on - strand, within DDA3937_RS01640 at 360.572 kb on + strand, within DDA3937_RS01640 at 360.573 kb on - strand, within DDA3937_RS01640 at 360.573 kb on - strand, within DDA3937_RS01640 at 360.689 kb on + strand, within DDA3937_RS01640 at 360.689 kb on + strand, within DDA3937_RS01640 at 360.689 kb on + strand, within DDA3937_RS01640 at 360.689 kb on + strand, within DDA3937_RS01640 at 360.689 kb on + strand, within DDA3937_RS01640 at 360.690 kb on - strand, within DDA3937_RS01640 at 360.690 kb on - strand, within DDA3937_RS01640 at 360.750 kb on + strand, within DDA3937_RS01640
Per-strain Table
Position Strand Gene LocusTag Fraction Atlantic remove 358,986 + +0.5 359,017 + +0.0 359,017 + -0.0 359,017 + +1.0 359,025 + -0.8 359,039 + -0.3 359,039 + -2.1 359,039 + -1.3 359,039 + +0.2 359,040 - +1.8 359,060 + +0.8 359,061 - -0.9 359,061 - +2.1 359,061 - +0.4 359,061 - -0.6 359,063 + -0.1 359,063 + -0.4 359,064 - +0.9 359,064 - +0.1 359,064 - -0.1 359,064 - -0.7 359,109 + +2.1 359,109 + +0.2 359,110 - -0.9 359,110 - +0.3 359,110 - -0.4 359,131 + +0.2 359,131 + -2.7 359,156 + -0.7 359,241 - DDA3937_RS01635 0.11 -0.7 359,257 + DDA3937_RS01635 0.14 -0.6 359,318 - DDA3937_RS01635 0.23 +0.5 359,328 + DDA3937_RS01635 0.25 -0.2 359,332 + DDA3937_RS01635 0.26 -1.9 359,332 + DDA3937_RS01635 0.26 -0.3 359,332 + DDA3937_RS01635 0.26 -0.4 359,332 + DDA3937_RS01635 0.26 +0.1 359,333 - DDA3937_RS01635 0.26 +1.1 359,333 - DDA3937_RS01635 0.26 -1.0 359,333 - DDA3937_RS01635 0.26 -1.0 359,333 - DDA3937_RS01635 0.26 +1.7 359,333 - DDA3937_RS01635 0.26 -0.4 359,350 + DDA3937_RS01635 0.29 -1.1 359,350 + DDA3937_RS01635 0.29 -0.5 359,350 + DDA3937_RS01635 0.29 -0.9 359,351 - DDA3937_RS01635 0.29 -0.9 359,351 - DDA3937_RS01635 0.29 -0.3 359,427 - DDA3937_RS01635 0.41 +1.2 359,479 - DDA3937_RS01635 0.49 +0.3 359,481 + DDA3937_RS01635 0.49 -0.4 359,481 + DDA3937_RS01635 0.49 -0.4 359,481 + DDA3937_RS01635 0.49 +0.1 359,511 + DDA3937_RS01635 0.54 -1.4 359,512 - DDA3937_RS01635 0.54 -0.7 359,514 - DDA3937_RS01635 0.55 -0.9 359,543 + DDA3937_RS01635 0.59 -0.9 359,556 + DDA3937_RS01635 0.61 -0.8 359,556 + DDA3937_RS01635 0.61 -3.1 359,556 + DDA3937_RS01635 0.61 -1.4 359,575 + DDA3937_RS01635 0.64 -2.1 359,576 - DDA3937_RS01635 0.65 -2.0 359,576 - DDA3937_RS01635 0.65 +4.6 359,576 - DDA3937_RS01635 0.65 -0.3 359,622 + DDA3937_RS01635 0.72 -0.1 359,622 + DDA3937_RS01635 0.72 +0.0 359,623 - DDA3937_RS01635 0.72 +1.2 359,623 - DDA3937_RS01635 0.72 -1.0 359,623 - DDA3937_RS01635 0.72 -1.2 359,642 + DDA3937_RS01635 0.75 -1.2 359,642 + DDA3937_RS01635 0.75 -1.0 359,642 + DDA3937_RS01635 0.75 -0.2 359,643 - DDA3937_RS01635 0.75 -0.3 359,740 + +0.1 359,740 + -0.9 359,741 - +0.6 359,802 + +0.6 359,803 - +0.7 359,829 + +0.4 359,829 + +2.5 359,829 + -1.1 359,830 - -0.2 359,830 - +1.9 359,830 - +0.5 359,830 - +1.0 359,830 - -0.0 359,843 - -1.3 359,843 - +0.2 359,843 - +1.1 359,873 + -0.2 359,873 + -1.3 359,873 + -0.2 359,881 + -1.3 359,889 + +0.1 359,889 + +0.8 359,889 + -0.5 359,889 + -1.1 359,889 + -0.1 359,889 + +0.6 359,889 + -0.5 359,889 + +0.8 359,889 + +0.4 359,889 + +1.1 359,890 - +2.4 359,890 - +0.4 359,890 - -0.2 359,890 - -0.5 359,890 - +2.1 359,890 - -0.5 359,890 - -1.1 359,890 - -0.5 359,894 - +0.9 359,963 - DDA3937_RS01640 0.14 +0.0 360,018 + DDA3937_RS01640 0.18 -0.3 360,030 - DDA3937_RS01640 0.19 +0.4 360,030 - DDA3937_RS01640 0.19 -0.4 360,060 - DDA3937_RS01640 0.22 +0.2 360,097 + DDA3937_RS01640 0.24 -1.4 360,098 - DDA3937_RS01640 0.25 +0.0 360,098 - DDA3937_RS01640 0.25 -1.6 360,184 - DDA3937_RS01640 0.31 +0.2 360,206 + DDA3937_RS01640 0.33 +0.6 360,207 - DDA3937_RS01640 0.33 +0.1 360,207 - DDA3937_RS01640 0.33 -0.2 360,260 - DDA3937_RS01640 0.37 -0.7 360,270 + DDA3937_RS01640 0.38 -0.9 360,270 + DDA3937_RS01640 0.38 +0.3 360,270 + DDA3937_RS01640 0.38 -1.1 360,270 + DDA3937_RS01640 0.38 -0.4 360,271 - DDA3937_RS01640 0.38 -1.4 360,349 + DDA3937_RS01640 0.45 -1.1 360,349 + DDA3937_RS01640 0.45 +1.3 360,435 + DDA3937_RS01640 0.51 +0.0 360,436 - DDA3937_RS01640 0.52 +1.2 360,436 - DDA3937_RS01640 0.52 +0.5 360,436 - DDA3937_RS01640 0.52 -0.9 360,436 - DDA3937_RS01640 0.52 -1.5 360,471 + DDA3937_RS01640 0.54 -0.1 360,471 + DDA3937_RS01640 0.54 -0.4 360,471 + DDA3937_RS01640 0.54 -2.4 360,472 - DDA3937_RS01640 0.54 -0.4 360,472 - DDA3937_RS01640 0.54 -1.1 360,472 - DDA3937_RS01640 0.54 +0.5 360,472 - DDA3937_RS01640 0.54 -1.3 360,472 - DDA3937_RS01640 0.54 -1.3 360,473 + DDA3937_RS01640 0.54 -2.2 360,473 + DDA3937_RS01640 0.54 -0.1 360,473 + DDA3937_RS01640 0.54 -0.1 360,473 + DDA3937_RS01640 0.54 -0.7 360,474 - DDA3937_RS01640 0.55 -1.6 360,474 - DDA3937_RS01640 0.55 -0.1 360,513 + DDA3937_RS01640 0.58 +0.9 360,513 + DDA3937_RS01640 0.58 -0.4 360,513 + DDA3937_RS01640 0.58 -0.7 360,514 - DDA3937_RS01640 0.58 -1.5 360,514 - DDA3937_RS01640 0.58 +0.4 360,514 - DDA3937_RS01640 0.58 -1.3 360,514 - DDA3937_RS01640 0.58 -0.9 360,514 - DDA3937_RS01640 0.58 +1.6 360,572 + DDA3937_RS01640 0.62 +0.7 360,573 - DDA3937_RS01640 0.62 +0.1 360,573 - DDA3937_RS01640 0.62 -1.2 360,689 + DDA3937_RS01640 0.72 -0.4 360,689 + DDA3937_RS01640 0.72 +0.1 360,689 + DDA3937_RS01640 0.72 +0.0 360,689 + DDA3937_RS01640 0.72 -1.2 360,689 + DDA3937_RS01640 0.72 -0.4 360,690 - DDA3937_RS01640 0.72 +0.5 360,690 - DDA3937_RS01640 0.72 +0.8 360,750 + DDA3937_RS01640 0.77 -0.4
Or see this region's nucleotide sequence