Experiment: Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS01250 and DDA3937_RS01255 are separated by 76 nucleotides DDA3937_RS01255 and DDA3937_RS01260 are separated by 8 nucleotides DDA3937_RS01260 and DDA3937_RS01265 are separated by 9 nucleotides
DDA3937_RS01250: DDA3937_RS01250 - molybdopterin-guanine dinucleotide biosynthesis protein MobB, at 283,931 to 284,167
_RS01250
DDA3937_RS01255: DDA3937_RS01255 - amino acid ABC transporter ATP-binding protein, at 284,244 to 285,005
_RS01255
DDA3937_RS01260: DDA3937_RS01260 - amino acid ABC transporter permease, at 285,014 to 286,108
_RS01260
DDA3937_RS01265: DDA3937_RS01265 - amino acid ABC transporter permease, at 286,118 to 287,296
_RS01265
Position (kb) 285
286
287 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6 at 284.170 kb on + strand at 284.241 kb on + strand at 284.245 kb on + strand at 284.246 kb on - strand at 284.246 kb on - strand at 284.254 kb on - strand at 284.276 kb on + strand at 284.276 kb on + strand at 284.277 kb on - strand at 284.572 kb on + strand, within DDA3937_RS01255 at 284.611 kb on + strand, within DDA3937_RS01255 at 284.612 kb on - strand, within DDA3937_RS01255 at 284.612 kb on - strand, within DDA3937_RS01255 at 284.612 kb on - strand, within DDA3937_RS01255 at 284.676 kb on - strand, within DDA3937_RS01255 at 284.676 kb on - strand, within DDA3937_RS01255 at 284.756 kb on + strand, within DDA3937_RS01255 at 284.790 kb on + strand, within DDA3937_RS01255 at 284.790 kb on + strand, within DDA3937_RS01255 at 284.831 kb on + strand, within DDA3937_RS01255 at 284.882 kb on + strand, within DDA3937_RS01255 at 284.882 kb on + strand at 284.882 kb on + strand, within DDA3937_RS01255 at 284.882 kb on + strand, within DDA3937_RS01255 at 284.883 kb on - strand, within DDA3937_RS01255 at 284.883 kb on - strand, within DDA3937_RS01255 at 284.912 kb on + strand, within DDA3937_RS01255 at 284.913 kb on - strand, within DDA3937_RS01255 at 284.922 kb on + strand, within DDA3937_RS01255 at 284.922 kb on + strand, within DDA3937_RS01255 at 284.923 kb on - strand at 284.938 kb on + strand at 284.945 kb on + strand at 284.945 kb on + strand at 284.945 kb on + strand at 284.946 kb on - strand at 284.946 kb on - strand at 284.946 kb on - strand at 284.972 kb on - strand at 285.050 kb on + strand at 285.061 kb on + strand at 285.061 kb on + strand at 285.110 kb on + strand at 285.110 kb on + strand at 285.110 kb on + strand at 285.110 kb on + strand at 285.111 kb on - strand at 285.111 kb on - strand at 285.111 kb on - strand at 285.111 kb on - strand at 285.114 kb on + strand at 285.114 kb on + strand at 285.114 kb on + strand at 285.114 kb on + strand at 285.114 kb on + strand at 285.114 kb on + strand at 285.114 kb on + strand at 285.114 kb on + strand at 285.114 kb on + strand at 285.114 kb on + strand at 285.114 kb on + strand at 285.115 kb on - strand at 285.115 kb on - strand at 285.115 kb on - strand at 285.115 kb on - strand at 285.115 kb on - strand at 285.115 kb on - strand at 285.115 kb on - strand at 285.115 kb on - strand at 285.295 kb on + strand, within DDA3937_RS01260 at 285.296 kb on - strand, within DDA3937_RS01260 at 285.296 kb on - strand, within DDA3937_RS01260 at 285.333 kb on + strand, within DDA3937_RS01260 at 285.334 kb on - strand, within DDA3937_RS01260 at 285.384 kb on + strand, within DDA3937_RS01260 at 285.384 kb on + strand at 285.384 kb on + strand, within DDA3937_RS01260 at 285.385 kb on - strand, within DDA3937_RS01260 at 285.385 kb on - strand, within DDA3937_RS01260 at 285.493 kb on + strand, within DDA3937_RS01260 at 285.504 kb on - strand, within DDA3937_RS01260 at 285.631 kb on + strand, within DDA3937_RS01260 at 285.632 kb on - strand, within DDA3937_RS01260 at 285.720 kb on + strand, within DDA3937_RS01260 at 285.721 kb on - strand, within DDA3937_RS01260 at 285.745 kb on - strand, within DDA3937_RS01260 at 285.745 kb on - strand, within DDA3937_RS01260 at 285.745 kb on - strand, within DDA3937_RS01260 at 285.745 kb on - strand, within DDA3937_RS01260 at 285.745 kb on - strand, within DDA3937_RS01260 at 285.804 kb on - strand, within DDA3937_RS01260 at 285.844 kb on - strand, within DDA3937_RS01260 at 285.853 kb on - strand, within DDA3937_RS01260 at 285.853 kb on - strand, within DDA3937_RS01260 at 285.853 kb on - strand, within DDA3937_RS01260 at 285.853 kb on - strand, within DDA3937_RS01260 at 285.937 kb on + strand, within DDA3937_RS01260 at 285.938 kb on - strand, within DDA3937_RS01260 at 286.096 kb on + strand at 286.096 kb on + strand at 286.096 kb on + strand at 286.096 kb on + strand at 286.096 kb on + strand at 286.096 kb on + strand at 286.097 kb on - strand at 286.097 kb on - strand at 286.097 kb on - strand at 286.097 kb on - strand at 286.097 kb on - strand at 286.097 kb on - strand at 286.097 kb on - strand at 286.097 kb on - strand at 286.131 kb on - strand at 286.149 kb on + strand at 286.149 kb on + strand at 286.149 kb on + strand at 286.149 kb on + strand at 286.149 kb on + strand at 286.149 kb on + strand at 286.149 kb on + strand at 286.149 kb on + strand at 286.149 kb on + strand at 286.149 kb on + strand at 286.149 kb on + strand at 286.149 kb on + strand at 286.149 kb on + strand at 286.150 kb on - strand at 286.150 kb on - strand at 286.150 kb on - strand at 286.150 kb on - strand at 286.150 kb on - strand at 286.150 kb on - strand at 286.150 kb on - strand at 286.150 kb on - strand at 286.150 kb on - strand at 286.150 kb on - strand at 286.150 kb on - strand at 286.163 kb on + strand at 286.183 kb on + strand at 286.183 kb on + strand at 286.192 kb on - strand at 286.346 kb on - strand, within DDA3937_RS01265 at 286.378 kb on + strand, within DDA3937_RS01265 at 286.378 kb on + strand, within DDA3937_RS01265 at 286.378 kb on + strand, within DDA3937_RS01265 at 286.434 kb on + strand, within DDA3937_RS01265 at 286.475 kb on - strand, within DDA3937_RS01265 at 286.486 kb on + strand, within DDA3937_RS01265 at 286.486 kb on + strand, within DDA3937_RS01265 at 286.486 kb on + strand, within DDA3937_RS01265 at 286.486 kb on + strand, within DDA3937_RS01265 at 286.486 kb on + strand, within DDA3937_RS01265 at 286.486 kb on + strand, within DDA3937_RS01265 at 286.486 kb on + strand, within DDA3937_RS01265 at 286.486 kb on + strand, within DDA3937_RS01265 at 286.486 kb on + strand, within DDA3937_RS01265 at 286.487 kb on - strand, within DDA3937_RS01265 at 286.487 kb on - strand, within DDA3937_RS01265 at 286.487 kb on - strand, within DDA3937_RS01265 at 286.487 kb on - strand, within DDA3937_RS01265 at 286.487 kb on - strand at 286.487 kb on - strand, within DDA3937_RS01265 at 286.487 kb on - strand, within DDA3937_RS01265 at 286.487 kb on - strand, within DDA3937_RS01265 at 286.487 kb on - strand, within DDA3937_RS01265 at 286.487 kb on - strand, within DDA3937_RS01265 at 286.487 kb on - strand, within DDA3937_RS01265 at 286.488 kb on + strand, within DDA3937_RS01265 at 286.488 kb on + strand, within DDA3937_RS01265 at 286.488 kb on + strand, within DDA3937_RS01265 at 286.489 kb on - strand, within DDA3937_RS01265 at 286.489 kb on - strand, within DDA3937_RS01265 at 286.489 kb on - strand, within DDA3937_RS01265 at 286.632 kb on - strand, within DDA3937_RS01265 at 286.683 kb on + strand, within DDA3937_RS01265 at 286.683 kb on + strand, within DDA3937_RS01265 at 286.690 kb on + strand, within DDA3937_RS01265 at 286.785 kb on + strand, within DDA3937_RS01265 at 286.785 kb on + strand, within DDA3937_RS01265 at 286.785 kb on + strand at 286.785 kb on + strand, within DDA3937_RS01265 at 286.786 kb on - strand, within DDA3937_RS01265 at 286.813 kb on + strand, within DDA3937_RS01265 at 286.814 kb on - strand, within DDA3937_RS01265 at 286.878 kb on + strand, within DDA3937_RS01265 at 286.900 kb on + strand, within DDA3937_RS01265 at 286.920 kb on + strand, within DDA3937_RS01265 at 286.920 kb on + strand, within DDA3937_RS01265 at 286.920 kb on + strand, within DDA3937_RS01265 at 286.920 kb on + strand, within DDA3937_RS01265 at 286.920 kb on + strand, within DDA3937_RS01265 at 286.920 kb on + strand, within DDA3937_RS01265 at 286.920 kb on + strand, within DDA3937_RS01265 at 286.921 kb on - strand, within DDA3937_RS01265 at 286.921 kb on - strand, within DDA3937_RS01265 at 286.921 kb on - strand, within DDA3937_RS01265 at 286.921 kb on - strand at 286.921 kb on - strand, within DDA3937_RS01265 at 286.921 kb on - strand, within DDA3937_RS01265 at 286.921 kb on - strand, within DDA3937_RS01265 at 286.921 kb on - strand, within DDA3937_RS01265 at 286.921 kb on - strand, within DDA3937_RS01265 at 286.978 kb on + strand, within DDA3937_RS01265 at 286.979 kb on - strand, within DDA3937_RS01265 at 286.979 kb on - strand, within DDA3937_RS01265 at 286.979 kb on - strand, within DDA3937_RS01265 at 287.005 kb on + strand, within DDA3937_RS01265 at 287.006 kb on - strand at 287.061 kb on + strand, within DDA3937_RS01265 at 287.062 kb on - strand, within DDA3937_RS01265 at 287.101 kb on + strand, within DDA3937_RS01265 at 287.101 kb on + strand, within DDA3937_RS01265 at 287.102 kb on - strand, within DDA3937_RS01265
Per-strain Table
Position Strand Gene LocusTag Fraction Atlantic remove 284,170 + +0.8 284,241 + +3.2 284,245 + +5.9 284,246 - +0.1 284,246 - +0.5 284,254 - +0.6 284,276 + -1.0 284,276 + -2.6 284,277 - +0.1 284,572 + DDA3937_RS01255 0.43 -1.3 284,611 + DDA3937_RS01255 0.48 +0.5 284,612 - DDA3937_RS01255 0.48 -0.2 284,612 - DDA3937_RS01255 0.48 +0.5 284,612 - DDA3937_RS01255 0.48 -1.1 284,676 - DDA3937_RS01255 0.57 -1.0 284,676 - DDA3937_RS01255 0.57 +0.8 284,756 + DDA3937_RS01255 0.67 -0.1 284,790 + DDA3937_RS01255 0.72 -0.1 284,790 + DDA3937_RS01255 0.72 -0.7 284,831 + DDA3937_RS01255 0.77 +0.5 284,882 + DDA3937_RS01255 0.84 +0.7 284,882 + -0.5 284,882 + DDA3937_RS01255 0.84 -0.2 284,882 + DDA3937_RS01255 0.84 -0.3 284,883 - DDA3937_RS01255 0.84 +1.5 284,883 - DDA3937_RS01255 0.84 -1.3 284,912 + DDA3937_RS01255 0.88 +2.1 284,913 - DDA3937_RS01255 0.88 -1.0 284,922 + DDA3937_RS01255 0.89 -1.0 284,922 + DDA3937_RS01255 0.89 +0.3 284,923 - +0.5 284,938 + +0.3 284,945 + +0.5 284,945 + -0.1 284,945 + +0.3 284,946 - -0.5 284,946 - -0.4 284,946 - -0.3 284,972 - +0.3 285,050 + -1.1 285,061 + -0.5 285,061 + -0.6 285,110 + -0.3 285,110 + +0.2 285,110 + -1.4 285,110 + +0.6 285,111 - +0.4 285,111 - -0.8 285,111 - -2.4 285,111 - -0.2 285,114 + +0.9 285,114 + +0.0 285,114 + +0.5 285,114 + -0.7 285,114 + -0.3 285,114 + -0.0 285,114 + +1.8 285,114 + -0.5 285,114 + -0.7 285,114 + -1.2 285,114 + -0.2 285,115 - +0.0 285,115 - -0.8 285,115 - +0.9 285,115 - -2.7 285,115 - +0.5 285,115 - +1.1 285,115 - -1.0 285,115 - +1.2 285,295 + DDA3937_RS01260 0.26 -2.0 285,296 - DDA3937_RS01260 0.26 +0.8 285,296 - DDA3937_RS01260 0.26 +0.1 285,333 + DDA3937_RS01260 0.29 -0.1 285,334 - DDA3937_RS01260 0.29 -0.1 285,384 + DDA3937_RS01260 0.34 +1.3 285,384 + +1.5 285,384 + DDA3937_RS01260 0.34 -1.7 285,385 - DDA3937_RS01260 0.34 +0.1 285,385 - DDA3937_RS01260 0.34 -1.2 285,493 + DDA3937_RS01260 0.44 -0.4 285,504 - DDA3937_RS01260 0.45 +0.2 285,631 + DDA3937_RS01260 0.56 -1.5 285,632 - DDA3937_RS01260 0.56 -0.4 285,720 + DDA3937_RS01260 0.64 +0.5 285,721 - DDA3937_RS01260 0.65 -0.8 285,745 - DDA3937_RS01260 0.67 +0.1 285,745 - DDA3937_RS01260 0.67 +0.0 285,745 - DDA3937_RS01260 0.67 -0.5 285,745 - DDA3937_RS01260 0.67 +1.8 285,745 - DDA3937_RS01260 0.67 -1.1 285,804 - DDA3937_RS01260 0.72 +1.2 285,844 - DDA3937_RS01260 0.76 -0.3 285,853 - DDA3937_RS01260 0.77 -0.2 285,853 - DDA3937_RS01260 0.77 -0.4 285,853 - DDA3937_RS01260 0.77 +0.2 285,853 - DDA3937_RS01260 0.77 -1.5 285,937 + DDA3937_RS01260 0.84 +1.5 285,938 - DDA3937_RS01260 0.84 -1.2 286,096 + +0.3 286,096 + -1.0 286,096 + -0.8 286,096 + -0.1 286,096 + +1.8 286,096 + +3.6 286,097 - +0.1 286,097 - +0.4 286,097 - +0.3 286,097 - +0.6 286,097 - -1.8 286,097 - -1.1 286,097 - +1.3 286,097 - +0.8 286,131 - -0.9 286,149 + +0.1 286,149 + -0.8 286,149 + -0.9 286,149 + -0.1 286,149 + -0.2 286,149 + -0.9 286,149 + +1.2 286,149 + -0.1 286,149 + -0.9 286,149 + -1.8 286,149 + -0.1 286,149 + +0.3 286,149 + +0.1 286,150 - -1.3 286,150 - -2.7 286,150 - +0.6 286,150 - -0.2 286,150 - +0.3 286,150 - +0.9 286,150 - -2.1 286,150 - +0.6 286,150 - -1.8 286,150 - -0.9 286,150 - -0.5 286,163 + -1.7 286,183 + -0.3 286,183 + -0.5 286,192 - +0.3 286,346 - DDA3937_RS01265 0.19 -1.7 286,378 + DDA3937_RS01265 0.22 -0.6 286,378 + DDA3937_RS01265 0.22 -0.3 286,378 + DDA3937_RS01265 0.22 -0.4 286,434 + DDA3937_RS01265 0.27 -1.1 286,475 - DDA3937_RS01265 0.30 -0.8 286,486 + DDA3937_RS01265 0.31 +0.7 286,486 + DDA3937_RS01265 0.31 -0.5 286,486 + DDA3937_RS01265 0.31 +1.5 286,486 + DDA3937_RS01265 0.31 -0.3 286,486 + DDA3937_RS01265 0.31 -0.8 286,486 + DDA3937_RS01265 0.31 +1.6 286,486 + DDA3937_RS01265 0.31 +0.7 286,486 + DDA3937_RS01265 0.31 -0.7 286,486 + DDA3937_RS01265 0.31 -2.2 286,487 - DDA3937_RS01265 0.31 -1.0 286,487 - DDA3937_RS01265 0.31 -2.6 286,487 - DDA3937_RS01265 0.31 -0.5 286,487 - DDA3937_RS01265 0.31 -0.1 286,487 - +1.5 286,487 - DDA3937_RS01265 0.31 -0.4 286,487 - DDA3937_RS01265 0.31 -0.7 286,487 - DDA3937_RS01265 0.31 +0.2 286,487 - DDA3937_RS01265 0.31 +5.1 286,487 - DDA3937_RS01265 0.31 +2.5 286,487 - DDA3937_RS01265 0.31 -1.2 286,488 + DDA3937_RS01265 0.31 -1.2 286,488 + DDA3937_RS01265 0.31 -0.5 286,488 + DDA3937_RS01265 0.31 +0.0 286,489 - DDA3937_RS01265 0.31 +0.2 286,489 - DDA3937_RS01265 0.31 -2.5 286,489 - DDA3937_RS01265 0.31 -0.7 286,632 - DDA3937_RS01265 0.44 +0.4 286,683 + DDA3937_RS01265 0.48 -0.8 286,683 + DDA3937_RS01265 0.48 -0.5 286,690 + DDA3937_RS01265 0.49 -0.1 286,785 + DDA3937_RS01265 0.57 +0.8 286,785 + DDA3937_RS01265 0.57 +2.6 286,785 + -0.1 286,785 + DDA3937_RS01265 0.57 -2.0 286,786 - DDA3937_RS01265 0.57 -0.3 286,813 + DDA3937_RS01265 0.59 +0.2 286,814 - DDA3937_RS01265 0.59 -0.1 286,878 + DDA3937_RS01265 0.64 -0.8 286,900 + DDA3937_RS01265 0.66 -2.2 286,920 + DDA3937_RS01265 0.68 +0.4 286,920 + DDA3937_RS01265 0.68 +4.8 286,920 + DDA3937_RS01265 0.68 -1.9 286,920 + DDA3937_RS01265 0.68 -0.5 286,920 + DDA3937_RS01265 0.68 -0.7 286,920 + DDA3937_RS01265 0.68 -0.4 286,920 + DDA3937_RS01265 0.68 +0.1 286,921 - DDA3937_RS01265 0.68 +0.0 286,921 - DDA3937_RS01265 0.68 +0.7 286,921 - DDA3937_RS01265 0.68 -0.7 286,921 - +1.5 286,921 - DDA3937_RS01265 0.68 -0.3 286,921 - DDA3937_RS01265 0.68 -1.5 286,921 - DDA3937_RS01265 0.68 +0.3 286,921 - DDA3937_RS01265 0.68 -0.8 286,921 - DDA3937_RS01265 0.68 +0.9 286,978 + DDA3937_RS01265 0.73 +0.5 286,979 - DDA3937_RS01265 0.73 -0.4 286,979 - DDA3937_RS01265 0.73 -0.2 286,979 - DDA3937_RS01265 0.73 +0.4 287,005 + DDA3937_RS01265 0.75 -1.8 287,006 - -1.1 287,061 + DDA3937_RS01265 0.80 -0.6 287,062 - DDA3937_RS01265 0.80 -2.1 287,101 + DDA3937_RS01265 0.83 -0.6 287,101 + DDA3937_RS01265 0.83 -0.5 287,102 - DDA3937_RS01265 0.83 -1.7
Or see this region's nucleotide sequence