Experiment: Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS00915 and DDA3937_RS00920 are separated by 9 nucleotides DDA3937_RS00920 and DDA3937_RS00925 are separated by 85 nucleotides
DDA3937_RS00915: DDA3937_RS00915 - HslU--HslV peptidase ATPase subunit, at 209,945 to 211,276
_RS00915
DDA3937_RS00920: DDA3937_RS00920 - ATP-dependent protease subunit HslV, at 211,286 to 211,816
_RS00920
DDA3937_RS00925: DDA3937_RS00925 - cell division protein FtsN, at 211,902 to 212,831
_RS00925
Position (kb) 211
212 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 210.413 kb on - strand, within DDA3937_RS00915 at 210.479 kb on - strand, within DDA3937_RS00915 at 210.559 kb on + strand, within DDA3937_RS00915 at 210.559 kb on + strand, within DDA3937_RS00915 at 210.732 kb on - strand, within DDA3937_RS00915 at 211.006 kb on - strand, within DDA3937_RS00915 at 211.228 kb on + strand at 211.229 kb on - strand at 211.229 kb on - strand at 211.230 kb on + strand at 211.230 kb on + strand at 211.230 kb on + strand at 211.230 kb on + strand at 211.230 kb on + strand at 211.230 kb on + strand at 211.230 kb on + strand at 211.230 kb on + strand at 211.230 kb on + strand at 211.230 kb on + strand at 211.230 kb on + strand at 211.230 kb on + strand at 211.230 kb on + strand at 211.230 kb on + strand at 211.230 kb on + strand at 211.230 kb on + strand at 211.231 kb on - strand at 211.231 kb on - strand at 211.231 kb on - strand at 211.231 kb on - strand at 211.231 kb on - strand at 211.231 kb on - strand at 211.231 kb on - strand at 211.231 kb on - strand at 211.231 kb on - strand at 211.231 kb on - strand at 211.231 kb on - strand at 211.231 kb on - strand at 211.231 kb on - strand at 211.234 kb on + strand at 211.234 kb on + strand at 211.234 kb on + strand at 211.234 kb on + strand at 211.235 kb on - strand at 211.235 kb on - strand at 211.235 kb on - strand at 211.235 kb on - strand at 211.250 kb on + strand at 211.250 kb on + strand at 211.276 kb on + strand at 211.276 kb on + strand at 211.276 kb on + strand at 211.277 kb on - strand at 211.277 kb on - strand at 211.287 kb on + strand at 211.288 kb on - strand at 211.302 kb on - strand at 211.332 kb on + strand at 211.332 kb on + strand at 211.332 kb on + strand at 211.333 kb on - strand at 211.333 kb on - strand at 211.343 kb on - strand, within DDA3937_RS00920 at 211.343 kb on - strand, within DDA3937_RS00920 at 211.388 kb on + strand, within DDA3937_RS00920 at 211.701 kb on + strand, within DDA3937_RS00920 at 211.701 kb on + strand, within DDA3937_RS00920 at 211.702 kb on - strand, within DDA3937_RS00920 at 211.736 kb on + strand, within DDA3937_RS00920 at 211.797 kb on - strand at 211.803 kb on - strand at 211.803 kb on - strand at 211.867 kb on - strand at 211.876 kb on - strand at 211.991 kb on - strand at 212.226 kb on + strand, within DDA3937_RS00925 at 212.273 kb on + strand, within DDA3937_RS00925 at 212.274 kb on - strand, within DDA3937_RS00925 at 212.274 kb on - strand, within DDA3937_RS00925 at 212.333 kb on + strand, within DDA3937_RS00925 at 212.387 kb on + strand, within DDA3937_RS00925 at 212.416 kb on + strand, within DDA3937_RS00925 at 212.416 kb on + strand, within DDA3937_RS00925 at 212.416 kb on + strand, within DDA3937_RS00925 at 212.416 kb on + strand, within DDA3937_RS00925 at 212.417 kb on - strand, within DDA3937_RS00925 at 212.417 kb on - strand, within DDA3937_RS00925 at 212.417 kb on - strand, within DDA3937_RS00925 at 212.417 kb on - strand, within DDA3937_RS00925 at 212.417 kb on - strand, within DDA3937_RS00925 at 212.496 kb on - strand, within DDA3937_RS00925 at 212.496 kb on - strand, within DDA3937_RS00925 at 212.816 kb on - strand at 212.816 kb on - strand at 212.816 kb on - strand at 212.816 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Atlantic remove 210,413 - DDA3937_RS00915 0.35 +0.2 210,479 - DDA3937_RS00915 0.40 -0.4 210,559 + DDA3937_RS00915 0.46 -0.5 210,559 + DDA3937_RS00915 0.46 +0.4 210,732 - DDA3937_RS00915 0.59 -0.7 211,006 - DDA3937_RS00915 0.80 -0.5 211,228 + +0.1 211,229 - -1.2 211,229 - +0.7 211,230 + +0.2 211,230 + -0.7 211,230 + -1.5 211,230 + -2.0 211,230 + -1.6 211,230 + -0.2 211,230 + -0.2 211,230 + -0.1 211,230 + +0.0 211,230 + -0.8 211,230 + -0.1 211,230 + +0.4 211,230 + -1.6 211,230 + -0.8 211,230 + -0.7 211,230 + +0.5 211,231 - +0.1 211,231 - +0.8 211,231 - -2.2 211,231 - +0.3 211,231 - -0.3 211,231 - -0.7 211,231 - -2.3 211,231 - -0.5 211,231 - -0.8 211,231 - -1.7 211,231 - -1.8 211,231 - +1.1 211,231 - -1.6 211,234 + -1.3 211,234 + -1.0 211,234 + -1.5 211,234 + -1.5 211,235 - -1.5 211,235 - -0.5 211,235 - +0.0 211,235 - -0.3 211,250 + +0.5 211,250 + -1.8 211,276 + -1.6 211,276 + +2.1 211,276 + +0.7 211,277 - -1.1 211,277 - +1.1 211,287 + -0.7 211,288 - -0.7 211,302 - -1.0 211,332 + +0.5 211,332 + -2.3 211,332 + +0.0 211,333 - -1.2 211,333 - +1.9 211,343 - DDA3937_RS00920 0.11 -1.8 211,343 - DDA3937_RS00920 0.11 -0.1 211,388 + DDA3937_RS00920 0.19 -1.5 211,701 + DDA3937_RS00920 0.78 -0.3 211,701 + DDA3937_RS00920 0.78 -1.0 211,702 - DDA3937_RS00920 0.78 +0.7 211,736 + DDA3937_RS00920 0.85 -0.8 211,797 - -0.9 211,803 - -1.1 211,803 - +0.4 211,867 - -1.0 211,876 - +0.1 211,991 - -0.9 212,226 + DDA3937_RS00925 0.35 +0.2 212,273 + DDA3937_RS00925 0.40 -0.8 212,274 - DDA3937_RS00925 0.40 -1.5 212,274 - DDA3937_RS00925 0.40 -1.3 212,333 + DDA3937_RS00925 0.46 -0.5 212,387 + DDA3937_RS00925 0.52 -1.1 212,416 + DDA3937_RS00925 0.55 -1.6 212,416 + DDA3937_RS00925 0.55 -1.0 212,416 + DDA3937_RS00925 0.55 -0.7 212,416 + DDA3937_RS00925 0.55 -0.9 212,417 - DDA3937_RS00925 0.55 -0.4 212,417 - DDA3937_RS00925 0.55 +0.7 212,417 - DDA3937_RS00925 0.55 +0.6 212,417 - DDA3937_RS00925 0.55 +0.3 212,417 - DDA3937_RS00925 0.55 +1.5 212,496 - DDA3937_RS00925 0.64 -1.5 212,496 - DDA3937_RS00925 0.64 -1.4 212,816 - -1.2 212,816 - +1.5 212,816 - -3.0 212,816 - +0.9
Or see this region's nucleotide sequence