Experiment: Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS00855 and DDA3937_RS00860 are separated by 94 nucleotides DDA3937_RS00860 and DDA3937_RS00865 are separated by 152 nucleotides
DDA3937_RS00855: DDA3937_RS00855 - agmatine deiminase, at 198,064 to 199,164
_RS00855
DDA3937_RS00860: DDA3937_RS00860 - alkaline phosphatase, at 199,259 to 200,698
_RS00860
DDA3937_RS00865: DDA3937_RS00865 - triose-phosphate isomerase, at 200,851 to 201,621
_RS00865
Position (kb) 199
200
201 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 198.395 kb on + strand, within DDA3937_RS00855 at 198.439 kb on + strand, within DDA3937_RS00855 at 198.439 kb on + strand, within DDA3937_RS00855 at 198.440 kb on - strand, within DDA3937_RS00855 at 198.440 kb on - strand, within DDA3937_RS00855 at 198.506 kb on - strand, within DDA3937_RS00855 at 198.506 kb on - strand, within DDA3937_RS00855 at 198.646 kb on + strand, within DDA3937_RS00855 at 198.688 kb on + strand, within DDA3937_RS00855 at 198.688 kb on + strand, within DDA3937_RS00855 at 198.688 kb on + strand, within DDA3937_RS00855 at 198.688 kb on + strand, within DDA3937_RS00855 at 198.689 kb on - strand, within DDA3937_RS00855 at 198.689 kb on - strand, within DDA3937_RS00855 at 198.689 kb on - strand, within DDA3937_RS00855 at 198.689 kb on - strand, within DDA3937_RS00855 at 198.689 kb on - strand, within DDA3937_RS00855 at 198.689 kb on - strand, within DDA3937_RS00855 at 198.691 kb on - strand, within DDA3937_RS00855 at 198.787 kb on + strand, within DDA3937_RS00855 at 198.788 kb on - strand, within DDA3937_RS00855 at 198.808 kb on + strand, within DDA3937_RS00855 at 198.809 kb on - strand, within DDA3937_RS00855 at 198.886 kb on + strand, within DDA3937_RS00855 at 198.887 kb on - strand, within DDA3937_RS00855 at 198.887 kb on - strand, within DDA3937_RS00855 at 198.887 kb on - strand, within DDA3937_RS00855 at 198.940 kb on - strand, within DDA3937_RS00855 at 198.967 kb on + strand, within DDA3937_RS00855 at 198.967 kb on + strand, within DDA3937_RS00855 at 198.967 kb on + strand, within DDA3937_RS00855 at 198.967 kb on + strand, within DDA3937_RS00855 at 198.967 kb on + strand, within DDA3937_RS00855 at 198.967 kb on + strand, within DDA3937_RS00855 at 198.967 kb on + strand, within DDA3937_RS00855 at 198.968 kb on - strand, within DDA3937_RS00855 at 198.968 kb on - strand, within DDA3937_RS00855 at 198.968 kb on - strand, within DDA3937_RS00855 at 198.968 kb on - strand, within DDA3937_RS00855 at 198.968 kb on - strand, within DDA3937_RS00855 at 198.968 kb on - strand, within DDA3937_RS00855 at 198.968 kb on - strand, within DDA3937_RS00855 at 199.003 kb on + strand, within DDA3937_RS00855 at 199.003 kb on + strand, within DDA3937_RS00855 at 199.004 kb on - strand, within DDA3937_RS00855 at 199.004 kb on - strand, within DDA3937_RS00855 at 199.069 kb on + strand at 199.069 kb on + strand at 199.162 kb on + strand at 199.163 kb on - strand at 199.163 kb on - strand at 199.260 kb on + strand at 199.260 kb on + strand at 199.290 kb on + strand at 199.291 kb on - strand at 199.291 kb on - strand at 199.291 kb on - strand at 199.291 kb on - strand at 199.405 kb on - strand, within DDA3937_RS00860 at 199.721 kb on + strand, within DDA3937_RS00860 at 199.785 kb on + strand, within DDA3937_RS00860 at 199.786 kb on - strand, within DDA3937_RS00860 at 199.950 kb on + strand, within DDA3937_RS00860 at 200.221 kb on + strand, within DDA3937_RS00860 at 200.222 kb on - strand, within DDA3937_RS00860 at 200.262 kb on + strand, within DDA3937_RS00860 at 200.263 kb on - strand, within DDA3937_RS00860 at 200.317 kb on - strand, within DDA3937_RS00860 at 200.317 kb on - strand, within DDA3937_RS00860 at 200.359 kb on - strand, within DDA3937_RS00860 at 200.359 kb on - strand, within DDA3937_RS00860 at 200.359 kb on - strand, within DDA3937_RS00860 at 200.418 kb on + strand, within DDA3937_RS00860 at 200.418 kb on + strand, within DDA3937_RS00860 at 200.419 kb on - strand, within DDA3937_RS00860 at 200.423 kb on - strand, within DDA3937_RS00860 at 200.587 kb on - strand at 200.715 kb on + strand at 200.716 kb on - strand at 200.716 kb on - strand at 200.720 kb on - strand at 200.726 kb on + strand at 200.726 kb on + strand at 200.726 kb on + strand at 200.727 kb on - strand at 200.727 kb on - strand at 200.727 kb on - strand at 200.727 kb on - strand at 200.727 kb on - strand at 200.740 kb on - strand at 200.746 kb on + strand at 200.801 kb on + strand at 201.320 kb on + strand, within DDA3937_RS00865 at 201.650 kb on - strand at 201.657 kb on - strand at 201.657 kb on - strand at 201.657 kb on - strand at 201.657 kb on - strand at 201.691 kb on + strand at 201.692 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Atlantic remove 198,395 + DDA3937_RS00855 0.30 -1.8 198,439 + DDA3937_RS00855 0.34 -2.1 198,439 + DDA3937_RS00855 0.34 -1.8 198,440 - DDA3937_RS00855 0.34 -0.5 198,440 - DDA3937_RS00855 0.34 -0.3 198,506 - DDA3937_RS00855 0.40 +0.9 198,506 - DDA3937_RS00855 0.40 -0.2 198,646 + DDA3937_RS00855 0.53 -0.6 198,688 + DDA3937_RS00855 0.57 +0.7 198,688 + DDA3937_RS00855 0.57 -1.1 198,688 + DDA3937_RS00855 0.57 +0.7 198,688 + DDA3937_RS00855 0.57 -0.5 198,689 - DDA3937_RS00855 0.57 -0.8 198,689 - DDA3937_RS00855 0.57 -0.4 198,689 - DDA3937_RS00855 0.57 -0.1 198,689 - DDA3937_RS00855 0.57 -0.4 198,689 - DDA3937_RS00855 0.57 -1.1 198,689 - DDA3937_RS00855 0.57 -0.1 198,691 - DDA3937_RS00855 0.57 -0.5 198,787 + DDA3937_RS00855 0.66 -1.0 198,788 - DDA3937_RS00855 0.66 -1.5 198,808 + DDA3937_RS00855 0.68 -0.6 198,809 - DDA3937_RS00855 0.68 -1.3 198,886 + DDA3937_RS00855 0.75 -0.4 198,887 - DDA3937_RS00855 0.75 +0.3 198,887 - DDA3937_RS00855 0.75 -1.2 198,887 - DDA3937_RS00855 0.75 -0.1 198,940 - DDA3937_RS00855 0.80 -0.0 198,967 + DDA3937_RS00855 0.82 +2.3 198,967 + DDA3937_RS00855 0.82 -0.9 198,967 + DDA3937_RS00855 0.82 -1.1 198,967 + DDA3937_RS00855 0.82 +1.5 198,967 + DDA3937_RS00855 0.82 -0.6 198,967 + DDA3937_RS00855 0.82 -0.3 198,967 + DDA3937_RS00855 0.82 +0.2 198,968 - DDA3937_RS00855 0.82 -1.2 198,968 - DDA3937_RS00855 0.82 -0.2 198,968 - DDA3937_RS00855 0.82 -0.1 198,968 - DDA3937_RS00855 0.82 -1.7 198,968 - DDA3937_RS00855 0.82 -0.8 198,968 - DDA3937_RS00855 0.82 -0.6 198,968 - DDA3937_RS00855 0.82 +1.6 199,003 + DDA3937_RS00855 0.85 -1.1 199,003 + DDA3937_RS00855 0.85 -0.5 199,004 - DDA3937_RS00855 0.85 +0.7 199,004 - DDA3937_RS00855 0.85 -0.1 199,069 + -0.3 199,069 + -0.4 199,162 + -1.2 199,163 - +2.8 199,163 - -1.5 199,260 + +0.7 199,260 + +0.9 199,290 + +1.6 199,291 - -0.7 199,291 - -0.7 199,291 - +0.4 199,291 - -0.7 199,405 - DDA3937_RS00860 0.10 +1.5 199,721 + DDA3937_RS00860 0.32 -0.1 199,785 + DDA3937_RS00860 0.37 +0.7 199,786 - DDA3937_RS00860 0.37 +0.5 199,950 + DDA3937_RS00860 0.48 -0.9 200,221 + DDA3937_RS00860 0.67 +0.3 200,222 - DDA3937_RS00860 0.67 -0.1 200,262 + DDA3937_RS00860 0.70 +1.7 200,263 - DDA3937_RS00860 0.70 -0.1 200,317 - DDA3937_RS00860 0.73 +0.2 200,317 - DDA3937_RS00860 0.73 +1.0 200,359 - DDA3937_RS00860 0.76 +0.8 200,359 - DDA3937_RS00860 0.76 -0.2 200,359 - DDA3937_RS00860 0.76 -0.5 200,418 + DDA3937_RS00860 0.80 +0.3 200,418 + DDA3937_RS00860 0.80 +2.2 200,419 - DDA3937_RS00860 0.81 +0.3 200,423 - DDA3937_RS00860 0.81 +0.1 200,587 - -0.2 200,715 + +0.3 200,716 - -0.1 200,716 - -0.3 200,720 - +0.6 200,726 + -0.1 200,726 + -0.4 200,726 + +0.3 200,727 - +0.9 200,727 - -0.5 200,727 - -0.7 200,727 - +2.3 200,727 - -1.3 200,740 - -0.7 200,746 + +0.3 200,801 + +0.3 201,320 + DDA3937_RS00865 0.61 -0.8 201,650 - -0.5 201,657 - +0.3 201,657 - -0.1 201,657 - +0.3 201,657 - +0.3 201,691 + -0.8 201,692 - +0.4
Or see this region's nucleotide sequence