Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS00440

Experiment: Atlantic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS00435 and DDA3937_RS00440 are separated by 674 nucleotidesDDA3937_RS00440 and DDA3937_RS00445 are separated by 159 nucleotides DDA3937_RS00435: DDA3937_RS00435 - heat shock chaperone IbpB, at 101,307 to 101,756 _RS00435 DDA3937_RS00440: DDA3937_RS00440 - anion permease, at 102,431 to 103,843 _RS00440 DDA3937_RS00445: DDA3937_RS00445 - two-component system sensor histidine kinase DcuS, at 104,003 to 105,616 _RS00445 Position (kb) 102 103 104Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 101.441 kb on + strand, within DDA3937_RS00435at 101.441 kb on + strand, within DDA3937_RS00435at 101.442 kb on - strand, within DDA3937_RS00435at 101.442 kb on - strand, within DDA3937_RS00435at 101.442 kb on - strandat 101.444 kb on + strand, within DDA3937_RS00435at 101.444 kb on + strand, within DDA3937_RS00435at 101.550 kb on + strand, within DDA3937_RS00435at 101.550 kb on + strand, within DDA3937_RS00435at 101.550 kb on + strand, within DDA3937_RS00435at 101.551 kb on - strand, within DDA3937_RS00435at 101.551 kb on - strand, within DDA3937_RS00435at 101.595 kb on - strand, within DDA3937_RS00435at 101.696 kb on + strand, within DDA3937_RS00435at 101.697 kb on - strand, within DDA3937_RS00435at 101.697 kb on - strand, within DDA3937_RS00435at 101.765 kb on - strandat 101.865 kb on - strandat 101.886 kb on - strandat 101.896 kb on + strandat 102.132 kb on + strandat 102.147 kb on + strandat 102.245 kb on + strandat 102.337 kb on - strandat 102.337 kb on - strandat 102.337 kb on - strandat 102.430 kb on + strandat 102.430 kb on + strandat 102.430 kb on + strandat 102.430 kb on + strandat 102.431 kb on - strandat 102.431 kb on - strandat 102.466 kb on + strandat 102.466 kb on + strandat 102.467 kb on - strandat 102.467 kb on - strandat 102.488 kb on - strandat 102.549 kb on + strandat 102.549 kb on + strandat 102.553 kb on + strandat 102.553 kb on + strandat 102.554 kb on - strandat 102.554 kb on - strandat 102.617 kb on - strand, within DDA3937_RS00440at 102.617 kb on - strand, within DDA3937_RS00440at 102.803 kb on + strand, within DDA3937_RS00440at 102.804 kb on - strand, within DDA3937_RS00440at 102.804 kb on - strand, within DDA3937_RS00440at 102.908 kb on + strand, within DDA3937_RS00440at 102.908 kb on + strand, within DDA3937_RS00440at 102.908 kb on + strand, within DDA3937_RS00440at 102.909 kb on - strand, within DDA3937_RS00440at 102.988 kb on + strand, within DDA3937_RS00440at 102.988 kb on + strand, within DDA3937_RS00440at 102.989 kb on - strand, within DDA3937_RS00440at 103.003 kb on + strand, within DDA3937_RS00440at 103.013 kb on - strand, within DDA3937_RS00440at 103.140 kb on - strand, within DDA3937_RS00440at 103.148 kb on + strand, within DDA3937_RS00440at 103.148 kb on + strand, within DDA3937_RS00440at 103.372 kb on - strand, within DDA3937_RS00440at 103.538 kb on + strand, within DDA3937_RS00440at 103.538 kb on + strand, within DDA3937_RS00440at 103.538 kb on + strand, within DDA3937_RS00440at 103.538 kb on + strand, within DDA3937_RS00440at 103.539 kb on - strand, within DDA3937_RS00440at 103.539 kb on - strand, within DDA3937_RS00440at 103.539 kb on - strand, within DDA3937_RS00440at 103.539 kb on - strand, within DDA3937_RS00440at 103.539 kb on - strand, within DDA3937_RS00440at 103.541 kb on + strand, within DDA3937_RS00440at 103.541 kb on + strand, within DDA3937_RS00440at 103.541 kb on + strand, within DDA3937_RS00440at 103.541 kb on + strand, within DDA3937_RS00440at 103.541 kb on + strand, within DDA3937_RS00440at 103.544 kb on + strand, within DDA3937_RS00440at 103.544 kb on + strand, within DDA3937_RS00440at 103.544 kb on + strand, within DDA3937_RS00440at 103.545 kb on - strand, within DDA3937_RS00440at 103.545 kb on - strand, within DDA3937_RS00440at 103.545 kb on - strand, within DDA3937_RS00440at 103.553 kb on + strand, within DDA3937_RS00440at 103.592 kb on + strand, within DDA3937_RS00440at 103.592 kb on + strand, within DDA3937_RS00440at 103.592 kb on + strand, within DDA3937_RS00440at 103.593 kb on - strand, within DDA3937_RS00440at 103.694 kb on + strandat 103.695 kb on - strand, within DDA3937_RS00440at 103.695 kb on - strand, within DDA3937_RS00440at 103.733 kb on + strandat 103.841 kb on + strandat 103.841 kb on + strandat 103.841 kb on + strandat 103.841 kb on + strandat 103.842 kb on - strandat 103.844 kb on + strandat 103.845 kb on - strandat 103.879 kb on - strandat 103.968 kb on + strandat 103.969 kb on - strandat 104.009 kb on - strandat 104.226 kb on + strand, within DDA3937_RS00445at 104.226 kb on + strand, within DDA3937_RS00445at 104.226 kb on + strand, within DDA3937_RS00445at 104.227 kb on - strand, within DDA3937_RS00445at 104.449 kb on + strand, within DDA3937_RS00445at 104.449 kb on + strand, within DDA3937_RS00445

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Per-strain Table

Position Strand Gene LocusTag Fraction Atlantic
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101,441 + DDA3937_RS00435 0.30 +2.5
101,441 + DDA3937_RS00435 0.30 +0.6
101,442 - DDA3937_RS00435 0.30 +0.4
101,442 - DDA3937_RS00435 0.30 -0.3
101,442 - +0.9
101,444 + DDA3937_RS00435 0.30 -0.3
101,444 + DDA3937_RS00435 0.30 +0.0
101,550 + DDA3937_RS00435 0.54 +0.6
101,550 + DDA3937_RS00435 0.54 +0.3
101,550 + DDA3937_RS00435 0.54 +1.8
101,551 - DDA3937_RS00435 0.54 -1.1
101,551 - DDA3937_RS00435 0.54 +0.2
101,595 - DDA3937_RS00435 0.64 +0.2
101,696 + DDA3937_RS00435 0.86 -1.2
101,697 - DDA3937_RS00435 0.87 -0.3
101,697 - DDA3937_RS00435 0.87 -0.1
101,765 - +0.2
101,865 - -0.5
101,886 - -1.0
101,896 + +0.7
102,132 + +0.1
102,147 + +1.9
102,245 + -0.4
102,337 - +0.2
102,337 - +2.7
102,337 - -1.0
102,430 + -0.3
102,430 + -0.7
102,430 + -0.0
102,430 + +0.3
102,431 - -1.6
102,431 - -0.9
102,466 + -0.2
102,466 + -0.2
102,467 - -0.0
102,467 - -0.6
102,488 - +0.2
102,549 + -0.7
102,549 + -0.1
102,553 + -0.2
102,553 + +0.9
102,554 - -0.2
102,554 - -1.2
102,617 - DDA3937_RS00440 0.13 +1.5
102,617 - DDA3937_RS00440 0.13 -0.5
102,803 + DDA3937_RS00440 0.26 -0.8
102,804 - DDA3937_RS00440 0.26 -1.1
102,804 - DDA3937_RS00440 0.26 +0.2
102,908 + DDA3937_RS00440 0.34 +0.2
102,908 + DDA3937_RS00440 0.34 +0.3
102,908 + DDA3937_RS00440 0.34 -0.5
102,909 - DDA3937_RS00440 0.34 -0.2
102,988 + DDA3937_RS00440 0.39 +0.3
102,988 + DDA3937_RS00440 0.39 -1.7
102,989 - DDA3937_RS00440 0.39 -0.1
103,003 + DDA3937_RS00440 0.40 -1.0
103,013 - DDA3937_RS00440 0.41 -0.5
103,140 - DDA3937_RS00440 0.50 -0.2
103,148 + DDA3937_RS00440 0.51 +0.3
103,148 + DDA3937_RS00440 0.51 +1.2
103,372 - DDA3937_RS00440 0.67 +0.1
103,538 + DDA3937_RS00440 0.78 +2.1
103,538 + DDA3937_RS00440 0.78 -1.6
103,538 + DDA3937_RS00440 0.78 -1.2
103,538 + DDA3937_RS00440 0.78 -0.1
103,539 - DDA3937_RS00440 0.78 +0.4
103,539 - DDA3937_RS00440 0.78 +0.5
103,539 - DDA3937_RS00440 0.78 +1.5
103,539 - DDA3937_RS00440 0.78 -0.7
103,539 - DDA3937_RS00440 0.78 -0.5
103,541 + DDA3937_RS00440 0.79 +1.3
103,541 + DDA3937_RS00440 0.79 -0.3
103,541 + DDA3937_RS00440 0.79 -2.7
103,541 + DDA3937_RS00440 0.79 -0.6
103,541 + DDA3937_RS00440 0.79 -0.8
103,544 + DDA3937_RS00440 0.79 -0.5
103,544 + DDA3937_RS00440 0.79 -2.8
103,544 + DDA3937_RS00440 0.79 -0.3
103,545 - DDA3937_RS00440 0.79 +2.9
103,545 - DDA3937_RS00440 0.79 -0.4
103,545 - DDA3937_RS00440 0.79 +1.1
103,553 + DDA3937_RS00440 0.79 -1.1
103,592 + DDA3937_RS00440 0.82 -1.3
103,592 + DDA3937_RS00440 0.82 +1.0
103,592 + DDA3937_RS00440 0.82 -1.5
103,593 - DDA3937_RS00440 0.82 -0.8
103,694 + +0.8
103,695 - DDA3937_RS00440 0.89 +0.7
103,695 - DDA3937_RS00440 0.89 -3.0
103,733 + -1.3
103,841 + -0.4
103,841 + -1.4
103,841 + +0.3
103,841 + -0.3
103,842 - -1.2
103,844 + +0.9
103,845 - -1.6
103,879 - +0.5
103,968 + -2.0
103,969 - -1.5
104,009 - -1.1
104,226 + DDA3937_RS00445 0.14 -0.8
104,226 + DDA3937_RS00445 0.14 -0.8
104,226 + DDA3937_RS00445 0.14 +1.5
104,227 - DDA3937_RS00445 0.14 -1.5
104,449 + DDA3937_RS00445 0.28 +0.4
104,449 + DDA3937_RS00445 0.28 -0.7

Or see this region's nucleotide sequence