Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS00235

Experiment: Atlantic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS00230 and DDA3937_RS00235 are separated by 168 nucleotidesDDA3937_RS00235 and DDA3937_RS00240 are separated by 118 nucleotides DDA3937_RS00230: DDA3937_RS00230 - LysR family transcriptional regulator, at 54,672 to 55,562 _RS00230 DDA3937_RS00235: DDA3937_RS00235 - MFS transporter, at 55,731 to 56,900 _RS00235 DDA3937_RS00240: DDA3937_RS00240 - histidine-type phosphatase, at 57,019 to 58,296 _RS00240 Position (kb) 55 56 57Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 55.013 kb on + strand, within DDA3937_RS00230at 55.013 kb on + strand, within DDA3937_RS00230at 55.013 kb on + strand, within DDA3937_RS00230at 55.013 kb on + strand, within DDA3937_RS00230at 55.013 kb on + strand, within DDA3937_RS00230at 55.013 kb on + strand, within DDA3937_RS00230at 55.014 kb on - strand, within DDA3937_RS00230at 55.014 kb on - strand, within DDA3937_RS00230at 55.014 kb on - strand, within DDA3937_RS00230at 55.183 kb on - strand, within DDA3937_RS00230at 55.183 kb on - strand, within DDA3937_RS00230at 55.183 kb on - strand, within DDA3937_RS00230at 55.245 kb on + strand, within DDA3937_RS00230at 55.245 kb on + strand, within DDA3937_RS00230at 55.246 kb on - strand, within DDA3937_RS00230at 55.328 kb on + strand, within DDA3937_RS00230at 55.499 kb on - strandat 55.595 kb on + strandat 55.595 kb on + strandat 55.639 kb on - strandat 55.639 kb on - strandat 55.639 kb on - strandat 55.741 kb on + strandat 55.741 kb on + strandat 55.741 kb on + strandat 55.741 kb on + strandat 55.741 kb on + strandat 55.741 kb on + strandat 55.742 kb on - strandat 55.742 kb on - strandat 55.747 kb on - strandat 55.823 kb on + strandat 55.823 kb on + strandat 55.824 kb on - strandat 55.824 kb on - strandat 55.824 kb on - strandat 55.827 kb on + strandat 55.827 kb on + strandat 55.827 kb on + strandat 55.827 kb on + strandat 55.827 kb on + strandat 55.827 kb on + strandat 55.827 kb on + strandat 55.828 kb on - strandat 55.828 kb on - strandat 55.828 kb on - strandat 55.828 kb on - strandat 55.828 kb on - strandat 55.828 kb on - strandat 55.828 kb on - strandat 55.828 kb on - strandat 55.828 kb on - strandat 55.830 kb on + strandat 55.831 kb on - strandat 55.831 kb on - strandat 55.831 kb on - strandat 55.917 kb on + strand, within DDA3937_RS00235at 56.062 kb on + strand, within DDA3937_RS00235at 56.101 kb on + strand, within DDA3937_RS00235at 56.101 kb on + strand, within DDA3937_RS00235at 56.101 kb on + strand, within DDA3937_RS00235at 56.101 kb on + strand, within DDA3937_RS00235at 56.102 kb on - strand, within DDA3937_RS00235at 56.291 kb on + strand, within DDA3937_RS00235at 56.452 kb on - strand, within DDA3937_RS00235at 56.452 kb on - strand, within DDA3937_RS00235at 56.666 kb on - strand, within DDA3937_RS00235at 56.666 kb on - strand, within DDA3937_RS00235at 56.666 kb on - strand, within DDA3937_RS00235at 56.666 kb on - strand, within DDA3937_RS00235at 56.718 kb on + strand, within DDA3937_RS00235at 56.718 kb on + strand, within DDA3937_RS00235at 56.718 kb on + strand, within DDA3937_RS00235at 56.719 kb on - strand, within DDA3937_RS00235at 56.753 kb on + strand, within DDA3937_RS00235at 56.753 kb on + strand, within DDA3937_RS00235at 56.753 kb on + strand, within DDA3937_RS00235at 56.754 kb on - strand, within DDA3937_RS00235at 56.754 kb on - strand, within DDA3937_RS00235at 56.898 kb on + strandat 56.898 kb on + strandat 56.935 kb on + strandat 56.935 kb on + strandat 56.935 kb on + strandat 56.944 kb on + strandat 56.945 kb on - strandat 57.016 kb on + strandat 57.017 kb on - strandat 57.020 kb on + strandat 57.020 kb on + strandat 57.020 kb on + strandat 57.021 kb on - strandat 57.218 kb on + strand, within DDA3937_RS00240at 57.219 kb on - strand, within DDA3937_RS00240at 57.219 kb on - strand, within DDA3937_RS00240at 57.219 kb on - strand, within DDA3937_RS00240at 57.219 kb on - strand, within DDA3937_RS00240at 57.219 kb on - strand, within DDA3937_RS00240at 57.288 kb on + strand, within DDA3937_RS00240at 57.288 kb on + strand, within DDA3937_RS00240at 57.371 kb on + strand, within DDA3937_RS00240at 57.371 kb on + strand, within DDA3937_RS00240at 57.372 kb on - strand, within DDA3937_RS00240at 57.372 kb on - strand, within DDA3937_RS00240at 57.372 kb on - strand, within DDA3937_RS00240at 57.372 kb on - strand, within DDA3937_RS00240at 57.420 kb on + strand, within DDA3937_RS00240at 57.433 kb on + strand, within DDA3937_RS00240at 57.469 kb on + strand, within DDA3937_RS00240at 57.473 kb on + strand, within DDA3937_RS00240at 57.473 kb on + strand, within DDA3937_RS00240at 57.474 kb on - strand, within DDA3937_RS00240at 57.474 kb on - strand, within DDA3937_RS00240at 57.497 kb on + strand, within DDA3937_RS00240at 57.590 kb on + strand, within DDA3937_RS00240at 57.591 kb on - strand, within DDA3937_RS00240

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Per-strain Table

Position Strand Gene LocusTag Fraction Atlantic
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55,013 + DDA3937_RS00230 0.38 +0.5
55,013 + DDA3937_RS00230 0.38 -1.8
55,013 + DDA3937_RS00230 0.38 -0.4
55,013 + DDA3937_RS00230 0.38 -0.1
55,013 + DDA3937_RS00230 0.38 -0.5
55,013 + DDA3937_RS00230 0.38 +0.4
55,014 - DDA3937_RS00230 0.38 -2.5
55,014 - DDA3937_RS00230 0.38 +2.5
55,014 - DDA3937_RS00230 0.38 +0.7
55,183 - DDA3937_RS00230 0.57 +1.2
55,183 - DDA3937_RS00230 0.57 -1.2
55,183 - DDA3937_RS00230 0.57 -1.1
55,245 + DDA3937_RS00230 0.64 -1.0
55,245 + DDA3937_RS00230 0.64 +0.3
55,246 - DDA3937_RS00230 0.64 +1.0
55,328 + DDA3937_RS00230 0.74 -1.4
55,499 - -0.7
55,595 + -0.6
55,595 + +0.4
55,639 - -2.0
55,639 - +1.6
55,639 - +0.9
55,741 + +0.7
55,741 + -0.6
55,741 + +0.5
55,741 + -1.4
55,741 + +0.3
55,741 + -0.9
55,742 - -1.2
55,742 - -1.0
55,747 - -0.3
55,823 + -1.0
55,823 + -1.2
55,824 - -3.0
55,824 - -0.5
55,824 - +0.9
55,827 + -0.0
55,827 + +0.1
55,827 + +0.1
55,827 + -1.3
55,827 + -0.2
55,827 + -0.7
55,827 + -0.7
55,828 - +0.7
55,828 - +3.2
55,828 - +0.3
55,828 - +0.1
55,828 - -1.3
55,828 - +4.0
55,828 - -0.3
55,828 - +0.7
55,828 - -0.8
55,830 + -0.2
55,831 - -1.3
55,831 - -0.8
55,831 - +0.5
55,917 + DDA3937_RS00235 0.16 +0.3
56,062 + DDA3937_RS00235 0.28 +1.0
56,101 + DDA3937_RS00235 0.32 -1.1
56,101 + DDA3937_RS00235 0.32 +0.3
56,101 + DDA3937_RS00235 0.32 +0.3
56,101 + DDA3937_RS00235 0.32 -2.0
56,102 - DDA3937_RS00235 0.32 +5.2
56,291 + DDA3937_RS00235 0.48 +0.3
56,452 - DDA3937_RS00235 0.62 +1.2
56,452 - DDA3937_RS00235 0.62 -1.1
56,666 - DDA3937_RS00235 0.80 +0.7
56,666 - DDA3937_RS00235 0.80 -0.8
56,666 - DDA3937_RS00235 0.80 +0.1
56,666 - DDA3937_RS00235 0.80 +0.2
56,718 + DDA3937_RS00235 0.84 -0.4
56,718 + DDA3937_RS00235 0.84 -1.4
56,718 + DDA3937_RS00235 0.84 -0.8
56,719 - DDA3937_RS00235 0.84 -0.8
56,753 + DDA3937_RS00235 0.87 +0.8
56,753 + DDA3937_RS00235 0.87 -1.3
56,753 + DDA3937_RS00235 0.87 +2.1
56,754 - DDA3937_RS00235 0.87 -0.1
56,754 - DDA3937_RS00235 0.87 -0.3
56,898 + -0.3
56,898 + -0.0
56,935 + +0.2
56,935 + -1.0
56,935 + -0.2
56,944 + -0.1
56,945 - +0.4
57,016 + -0.3
57,017 - +0.2
57,020 + -0.5
57,020 + +0.2
57,020 + -2.1
57,021 - -1.2
57,218 + DDA3937_RS00240 0.16 -0.4
57,219 - DDA3937_RS00240 0.16 -0.6
57,219 - DDA3937_RS00240 0.16 -0.6
57,219 - DDA3937_RS00240 0.16 +0.9
57,219 - DDA3937_RS00240 0.16 -0.5
57,219 - DDA3937_RS00240 0.16 -0.8
57,288 + DDA3937_RS00240 0.21 -0.6
57,288 + DDA3937_RS00240 0.21 +0.5
57,371 + DDA3937_RS00240 0.28 +2.2
57,371 + DDA3937_RS00240 0.28 -1.7
57,372 - DDA3937_RS00240 0.28 -1.8
57,372 - DDA3937_RS00240 0.28 -1.2
57,372 - DDA3937_RS00240 0.28 +0.9
57,372 - DDA3937_RS00240 0.28 -0.8
57,420 + DDA3937_RS00240 0.31 +1.8
57,433 + DDA3937_RS00240 0.32 +0.8
57,469 + DDA3937_RS00240 0.35 +0.5
57,473 + DDA3937_RS00240 0.36 -1.2
57,473 + DDA3937_RS00240 0.36 +0.7
57,474 - DDA3937_RS00240 0.36 +2.1
57,474 - DDA3937_RS00240 0.36 -0.3
57,497 + DDA3937_RS00240 0.37 +0.1
57,590 + DDA3937_RS00240 0.45 +1.2
57,591 - DDA3937_RS00240 0.45 -2.0

Or see this region's nucleotide sequence