Experiment: Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS21195 and DDA3937_RS21200 are separated by 670 nucleotides DDA3937_RS21200 and DDA3937_RS21205 are separated by 2 nucleotides DDA3937_RS21205 and DDA3937_RS21210 are separated by 199 nucleotides
DDA3937_RS21195: DDA3937_RS21195 - 4Fe-4S cluster-binding domain-containing protein, at 4,824,660 to 4,825,820
_RS21195
DDA3937_RS21200: DDA3937_RS21200 - phosphoserine transaminase, at 4,826,491 to 4,827,612
_RS21200
DDA3937_RS21205: DDA3937_RS21205 - Lrp/AsnC family transcriptional regulator, at 4,827,615 to 4,828,085
_RS21205
DDA3937_RS21210: DDA3937_RS21210 - YitT family protein, at 4,828,285 to 4,828,932
_RS21210
Position (kb) 4826
4827
4828 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 4825.624 kb on + strand, within DDA3937_RS21195 at 4825.628 kb on - strand, within DDA3937_RS21195 at 4825.628 kb on - strand, within DDA3937_RS21195 at 4825.662 kb on - strand, within DDA3937_RS21195 at 4825.671 kb on - strand, within DDA3937_RS21195 at 4825.713 kb on + strand at 4825.813 kb on - strand at 4825.813 kb on - strand at 4825.813 kb on - strand at 4825.814 kb on + strand at 4825.814 kb on + strand at 4825.860 kb on + strand at 4825.978 kb on + strand at 4826.095 kb on + strand at 4826.098 kb on - strand at 4826.216 kb on - strand at 4826.318 kb on + strand at 4826.319 kb on - strand at 4826.395 kb on + strand at 4826.395 kb on + strand at 4826.395 kb on + strand at 4826.395 kb on + strand at 4826.396 kb on - strand at 4826.396 kb on - strand at 4826.396 kb on - strand at 4826.424 kb on + strand at 4826.439 kb on - strand at 4826.439 kb on - strand at 4826.590 kb on - strand at 4826.696 kb on - strand, within DDA3937_RS21200 at 4826.781 kb on + strand, within DDA3937_RS21200 at 4826.781 kb on + strand, within DDA3937_RS21200 at 4826.781 kb on + strand, within DDA3937_RS21200 at 4826.781 kb on + strand, within DDA3937_RS21200 at 4826.781 kb on + strand, within DDA3937_RS21200 at 4826.782 kb on - strand, within DDA3937_RS21200 at 4826.782 kb on - strand, within DDA3937_RS21200 at 4826.782 kb on - strand, within DDA3937_RS21200 at 4826.863 kb on + strand, within DDA3937_RS21200 at 4826.906 kb on + strand, within DDA3937_RS21200 at 4826.906 kb on + strand, within DDA3937_RS21200 at 4826.906 kb on + strand, within DDA3937_RS21200 at 4826.907 kb on - strand, within DDA3937_RS21200 at 4826.907 kb on - strand, within DDA3937_RS21200 at 4827.157 kb on + strand, within DDA3937_RS21200 at 4827.157 kb on + strand, within DDA3937_RS21200 at 4827.158 kb on - strand, within DDA3937_RS21200 at 4827.159 kb on + strand, within DDA3937_RS21200 at 4827.160 kb on - strand, within DDA3937_RS21200 at 4827.217 kb on + strand, within DDA3937_RS21200 at 4827.217 kb on + strand, within DDA3937_RS21200 at 4827.217 kb on + strand, within DDA3937_RS21200 at 4827.217 kb on + strand, within DDA3937_RS21200 at 4827.217 kb on + strand, within DDA3937_RS21200 at 4827.217 kb on + strand, within DDA3937_RS21200 at 4827.218 kb on - strand, within DDA3937_RS21200 at 4827.218 kb on - strand, within DDA3937_RS21200 at 4827.218 kb on - strand, within DDA3937_RS21200 at 4827.218 kb on - strand, within DDA3937_RS21200 at 4827.218 kb on - strand, within DDA3937_RS21200 at 4827.331 kb on + strand, within DDA3937_RS21200 at 4827.332 kb on - strand, within DDA3937_RS21200 at 4827.332 kb on - strand, within DDA3937_RS21200 at 4827.355 kb on + strand, within DDA3937_RS21200 at 4827.355 kb on + strand, within DDA3937_RS21200 at 4827.355 kb on + strand, within DDA3937_RS21200 at 4827.356 kb on - strand, within DDA3937_RS21200 at 4827.367 kb on + strand, within DDA3937_RS21200 at 4827.367 kb on + strand at 4827.367 kb on + strand, within DDA3937_RS21200 at 4827.367 kb on + strand, within DDA3937_RS21200 at 4827.410 kb on + strand, within DDA3937_RS21200 at 4827.410 kb on + strand, within DDA3937_RS21200 at 4827.410 kb on + strand, within DDA3937_RS21200 at 4827.410 kb on + strand, within DDA3937_RS21200 at 4827.438 kb on + strand, within DDA3937_RS21200 at 4827.439 kb on - strand, within DDA3937_RS21200 at 4827.451 kb on + strand at 4827.515 kb on + strand at 4827.515 kb on + strand at 4827.516 kb on - strand at 4827.516 kb on - strand at 4827.762 kb on + strand, within DDA3937_RS21205 at 4827.762 kb on + strand, within DDA3937_RS21205 at 4827.879 kb on + strand, within DDA3937_RS21205 at 4827.879 kb on + strand, within DDA3937_RS21205 at 4827.879 kb on + strand, within DDA3937_RS21205 at 4827.880 kb on - strand, within DDA3937_RS21205 at 4827.884 kb on - strand, within DDA3937_RS21205 at 4827.884 kb on - strand, within DDA3937_RS21205 at 4827.884 kb on - strand, within DDA3937_RS21205 at 4827.932 kb on - strand, within DDA3937_RS21205 at 4828.100 kb on - strand at 4828.231 kb on + strand at 4828.250 kb on + strand at 4828.289 kb on + strand at 4828.289 kb on + strand at 4828.289 kb on + strand at 4828.290 kb on - strand at 4828.367 kb on + strand, within DDA3937_RS21210 at 4828.367 kb on + strand, within DDA3937_RS21210 at 4828.367 kb on + strand, within DDA3937_RS21210 at 4828.367 kb on + strand, within DDA3937_RS21210 at 4828.368 kb on - strand, within DDA3937_RS21210 at 4828.368 kb on - strand, within DDA3937_RS21210 at 4828.368 kb on - strand, within DDA3937_RS21210 at 4828.368 kb on - strand, within DDA3937_RS21210 at 4828.368 kb on - strand, within DDA3937_RS21210 at 4828.463 kb on + strand, within DDA3937_RS21210 at 4828.463 kb on + strand, within DDA3937_RS21210 at 4828.464 kb on - strand, within DDA3937_RS21210 at 4828.479 kb on + strand, within DDA3937_RS21210 at 4828.479 kb on + strand, within DDA3937_RS21210 at 4828.480 kb on - strand, within DDA3937_RS21210 at 4828.480 kb on - strand, within DDA3937_RS21210 at 4828.480 kb on - strand, within DDA3937_RS21210 at 4828.506 kb on + strand, within DDA3937_RS21210 at 4828.518 kb on + strand, within DDA3937_RS21210 at 4828.540 kb on + strand, within DDA3937_RS21210 at 4828.541 kb on - strand, within DDA3937_RS21210
Per-strain Table
Position Strand Gene LocusTag Fraction Atlantic remove 4,825,624 + DDA3937_RS21195 0.83 -2.0 4,825,628 - DDA3937_RS21195 0.83 -0.3 4,825,628 - DDA3937_RS21195 0.83 -0.2 4,825,662 - DDA3937_RS21195 0.86 -0.5 4,825,671 - DDA3937_RS21195 0.87 -1.4 4,825,713 + -2.0 4,825,813 - -1.1 4,825,813 - -0.9 4,825,813 - -1.8 4,825,814 + -0.6 4,825,814 + +0.1 4,825,860 + +0.6 4,825,978 + -0.3 4,826,095 + -0.9 4,826,098 - -0.6 4,826,216 - -0.7 4,826,318 + -1.1 4,826,319 - -0.2 4,826,395 + +0.7 4,826,395 + +0.6 4,826,395 + -0.7 4,826,395 + -1.5 4,826,396 - -1.5 4,826,396 - +1.9 4,826,396 - -0.2 4,826,424 + +0.8 4,826,439 - +0.4 4,826,439 - +1.4 4,826,590 - -0.2 4,826,696 - DDA3937_RS21200 0.18 -1.1 4,826,781 + DDA3937_RS21200 0.26 -0.4 4,826,781 + DDA3937_RS21200 0.26 +0.0 4,826,781 + DDA3937_RS21200 0.26 -0.9 4,826,781 + DDA3937_RS21200 0.26 -1.1 4,826,781 + DDA3937_RS21200 0.26 +1.2 4,826,782 - DDA3937_RS21200 0.26 -0.3 4,826,782 - DDA3937_RS21200 0.26 -0.5 4,826,782 - DDA3937_RS21200 0.26 -0.6 4,826,863 + DDA3937_RS21200 0.33 +2.5 4,826,906 + DDA3937_RS21200 0.37 +0.4 4,826,906 + DDA3937_RS21200 0.37 -1.5 4,826,906 + DDA3937_RS21200 0.37 -2.6 4,826,907 - DDA3937_RS21200 0.37 +0.9 4,826,907 - DDA3937_RS21200 0.37 -0.4 4,827,157 + DDA3937_RS21200 0.59 -0.2 4,827,157 + DDA3937_RS21200 0.59 +0.7 4,827,158 - DDA3937_RS21200 0.59 +0.4 4,827,159 + DDA3937_RS21200 0.60 -0.0 4,827,160 - DDA3937_RS21200 0.60 +0.8 4,827,217 + DDA3937_RS21200 0.65 +1.8 4,827,217 + DDA3937_RS21200 0.65 -1.6 4,827,217 + DDA3937_RS21200 0.65 -0.6 4,827,217 + DDA3937_RS21200 0.65 -0.9 4,827,217 + DDA3937_RS21200 0.65 +1.2 4,827,217 + DDA3937_RS21200 0.65 -1.5 4,827,218 - DDA3937_RS21200 0.65 -1.6 4,827,218 - DDA3937_RS21200 0.65 -0.6 4,827,218 - DDA3937_RS21200 0.65 +0.5 4,827,218 - DDA3937_RS21200 0.65 -0.0 4,827,218 - DDA3937_RS21200 0.65 +0.4 4,827,331 + DDA3937_RS21200 0.75 -2.0 4,827,332 - DDA3937_RS21200 0.75 -0.9 4,827,332 - DDA3937_RS21200 0.75 +0.3 4,827,355 + DDA3937_RS21200 0.77 +0.1 4,827,355 + DDA3937_RS21200 0.77 -0.4 4,827,355 + DDA3937_RS21200 0.77 -0.3 4,827,356 - DDA3937_RS21200 0.77 -1.9 4,827,367 + DDA3937_RS21200 0.78 -0.6 4,827,367 + +2.4 4,827,367 + DDA3937_RS21200 0.78 -0.4 4,827,367 + DDA3937_RS21200 0.78 -2.9 4,827,410 + DDA3937_RS21200 0.82 +1.5 4,827,410 + DDA3937_RS21200 0.82 -1.1 4,827,410 + DDA3937_RS21200 0.82 -2.4 4,827,410 + DDA3937_RS21200 0.82 -1.5 4,827,438 + DDA3937_RS21200 0.84 -1.0 4,827,439 - DDA3937_RS21200 0.84 +1.0 4,827,451 + -0.6 4,827,515 + +0.1 4,827,515 + -0.4 4,827,516 - -1.9 4,827,516 - -1.1 4,827,762 + DDA3937_RS21205 0.31 -0.0 4,827,762 + DDA3937_RS21205 0.31 +0.6 4,827,879 + DDA3937_RS21205 0.56 +0.3 4,827,879 + DDA3937_RS21205 0.56 -1.4 4,827,879 + DDA3937_RS21205 0.56 +0.2 4,827,880 - DDA3937_RS21205 0.56 -2.1 4,827,884 - DDA3937_RS21205 0.57 -0.6 4,827,884 - DDA3937_RS21205 0.57 -1.9 4,827,884 - DDA3937_RS21205 0.57 -0.1 4,827,932 - DDA3937_RS21205 0.67 +3.5 4,828,100 - +0.5 4,828,231 + -0.6 4,828,250 + -0.2 4,828,289 + +0.4 4,828,289 + +0.8 4,828,289 + -1.3 4,828,290 - -0.9 4,828,367 + DDA3937_RS21210 0.13 -0.7 4,828,367 + DDA3937_RS21210 0.13 +0.5 4,828,367 + DDA3937_RS21210 0.13 +1.3 4,828,367 + DDA3937_RS21210 0.13 -2.7 4,828,368 - DDA3937_RS21210 0.13 -3.0 4,828,368 - DDA3937_RS21210 0.13 -0.3 4,828,368 - DDA3937_RS21210 0.13 +2.2 4,828,368 - DDA3937_RS21210 0.13 -0.4 4,828,368 - DDA3937_RS21210 0.13 +0.9 4,828,463 + DDA3937_RS21210 0.27 -2.8 4,828,463 + DDA3937_RS21210 0.27 +0.3 4,828,464 - DDA3937_RS21210 0.28 +1.9 4,828,479 + DDA3937_RS21210 0.30 +0.9 4,828,479 + DDA3937_RS21210 0.30 -0.1 4,828,480 - DDA3937_RS21210 0.30 +1.4 4,828,480 - DDA3937_RS21210 0.30 +4.2 4,828,480 - DDA3937_RS21210 0.30 +0.7 4,828,506 + DDA3937_RS21210 0.34 -0.5 4,828,518 + DDA3937_RS21210 0.36 -0.2 4,828,540 + DDA3937_RS21210 0.39 +1.2 4,828,541 - DDA3937_RS21210 0.40 +0.6
Or see this region's nucleotide sequence