Experiment: Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS21160 and DDA3937_RS21165 are separated by 39 nucleotides DDA3937_RS21165 and DDA3937_RS21170 are separated by 5 nucleotides DDA3937_RS21170 and DDA3937_RS21175 are separated by 101 nucleotides
DDA3937_RS21160: DDA3937_RS21160 - oxalyl-CoA decarboxylase, at 4,816,221 to 4,817,966
_RS21160
DDA3937_RS21165: DDA3937_RS21165 - formyl-CoA transferase, at 4,818,006 to 4,819,283
_RS21165
DDA3937_RS21170: DDA3937_RS21170 - PAS domain S-box protein, at 4,819,289 to 4,819,720
_RS21170
DDA3937_RS21175: DDA3937_RS21175 - formyl-CoA transferase, at 4,819,822 to 4,821,069
_RS21175
Position (kb) 4818
4819
4820 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6
7 at 4817.021 kb on + strand, within DDA3937_RS21160 at 4817.055 kb on + strand, within DDA3937_RS21160 at 4817.055 kb on + strand, within DDA3937_RS21160 at 4817.055 kb on + strand, within DDA3937_RS21160 at 4817.055 kb on + strand, within DDA3937_RS21160 at 4817.055 kb on + strand, within DDA3937_RS21160 at 4817.055 kb on + strand, within DDA3937_RS21160 at 4817.055 kb on + strand, within DDA3937_RS21160 at 4817.055 kb on + strand, within DDA3937_RS21160 at 4817.055 kb on + strand, within DDA3937_RS21160 at 4817.055 kb on + strand, within DDA3937_RS21160 at 4817.055 kb on + strand, within DDA3937_RS21160 at 4817.056 kb on - strand, within DDA3937_RS21160 at 4817.056 kb on - strand, within DDA3937_RS21160 at 4817.056 kb on - strand, within DDA3937_RS21160 at 4817.056 kb on - strand, within DDA3937_RS21160 at 4817.056 kb on - strand, within DDA3937_RS21160 at 4817.056 kb on - strand, within DDA3937_RS21160 at 4817.059 kb on + strand, within DDA3937_RS21160 at 4817.059 kb on + strand, within DDA3937_RS21160 at 4817.059 kb on + strand, within DDA3937_RS21160 at 4817.059 kb on + strand, within DDA3937_RS21160 at 4817.060 kb on - strand, within DDA3937_RS21160 at 4817.060 kb on - strand, within DDA3937_RS21160 at 4817.060 kb on - strand, within DDA3937_RS21160 at 4817.060 kb on - strand, within DDA3937_RS21160 at 4817.060 kb on - strand, within DDA3937_RS21160 at 4817.124 kb on - strand, within DDA3937_RS21160 at 4817.165 kb on + strand, within DDA3937_RS21160 at 4817.248 kb on + strand, within DDA3937_RS21160 at 4817.248 kb on + strand, within DDA3937_RS21160 at 4817.248 kb on + strand, within DDA3937_RS21160 at 4817.248 kb on + strand, within DDA3937_RS21160 at 4817.248 kb on + strand, within DDA3937_RS21160 at 4817.249 kb on - strand, within DDA3937_RS21160 at 4817.496 kb on + strand, within DDA3937_RS21160 at 4817.496 kb on + strand, within DDA3937_RS21160 at 4817.496 kb on + strand, within DDA3937_RS21160 at 4817.496 kb on + strand, within DDA3937_RS21160 at 4817.496 kb on + strand, within DDA3937_RS21160 at 4817.496 kb on + strand, within DDA3937_RS21160 at 4817.497 kb on - strand, within DDA3937_RS21160 at 4817.497 kb on - strand, within DDA3937_RS21160 at 4817.497 kb on - strand, within DDA3937_RS21160 at 4817.497 kb on - strand, within DDA3937_RS21160 at 4817.497 kb on - strand, within DDA3937_RS21160 at 4817.497 kb on - strand, within DDA3937_RS21160 at 4817.497 kb on - strand, within DDA3937_RS21160 at 4817.497 kb on - strand, within DDA3937_RS21160 at 4817.497 kb on - strand, within DDA3937_RS21160 at 4817.497 kb on - strand, within DDA3937_RS21160 at 4817.497 kb on - strand, within DDA3937_RS21160 at 4817.537 kb on + strand, within DDA3937_RS21160 at 4817.703 kb on + strand, within DDA3937_RS21160 at 4817.703 kb on + strand, within DDA3937_RS21160 at 4817.704 kb on - strand, within DDA3937_RS21160 at 4817.704 kb on - strand, within DDA3937_RS21160 at 4817.704 kb on - strand, within DDA3937_RS21160 at 4817.775 kb on + strand, within DDA3937_RS21160 at 4817.882 kb on + strand at 4817.980 kb on + strand at 4817.980 kb on + strand at 4817.980 kb on + strand at 4817.981 kb on - strand at 4817.999 kb on + strand at 4818.005 kb on + strand at 4818.012 kb on - strand at 4818.012 kb on - strand at 4818.083 kb on + strand at 4818.192 kb on + strand, within DDA3937_RS21165 at 4818.192 kb on + strand, within DDA3937_RS21165 at 4818.192 kb on + strand, within DDA3937_RS21165 at 4818.193 kb on - strand, within DDA3937_RS21165 at 4818.193 kb on - strand, within DDA3937_RS21165 at 4818.193 kb on - strand, within DDA3937_RS21165 at 4818.236 kb on + strand, within DDA3937_RS21165 at 4818.339 kb on - strand, within DDA3937_RS21165 at 4818.414 kb on + strand, within DDA3937_RS21165 at 4818.414 kb on + strand, within DDA3937_RS21165 at 4818.414 kb on + strand, within DDA3937_RS21165 at 4818.433 kb on - strand, within DDA3937_RS21165 at 4818.577 kb on - strand, within DDA3937_RS21165 at 4818.577 kb on - strand, within DDA3937_RS21165 at 4818.577 kb on - strand, within DDA3937_RS21165 at 4818.641 kb on + strand, within DDA3937_RS21165 at 4818.706 kb on - strand, within DDA3937_RS21165 at 4818.825 kb on + strand, within DDA3937_RS21165 at 4818.825 kb on + strand, within DDA3937_RS21165 at 4818.825 kb on + strand, within DDA3937_RS21165 at 4818.825 kb on + strand, within DDA3937_RS21165 at 4818.825 kb on + strand, within DDA3937_RS21165 at 4818.825 kb on + strand, within DDA3937_RS21165 at 4818.825 kb on + strand, within DDA3937_RS21165 at 4818.826 kb on - strand, within DDA3937_RS21165 at 4818.826 kb on - strand, within DDA3937_RS21165 at 4818.826 kb on - strand, within DDA3937_RS21165 at 4818.826 kb on - strand, within DDA3937_RS21165 at 4818.826 kb on - strand, within DDA3937_RS21165 at 4818.831 kb on + strand, within DDA3937_RS21165 at 4818.831 kb on + strand, within DDA3937_RS21165 at 4818.831 kb on + strand, within DDA3937_RS21165 at 4818.832 kb on - strand, within DDA3937_RS21165 at 4818.841 kb on + strand, within DDA3937_RS21165 at 4818.841 kb on + strand, within DDA3937_RS21165 at 4818.842 kb on - strand, within DDA3937_RS21165 at 4818.877 kb on + strand, within DDA3937_RS21165 at 4818.910 kb on - strand, within DDA3937_RS21165 at 4818.910 kb on - strand, within DDA3937_RS21165 at 4818.910 kb on - strand, within DDA3937_RS21165 at 4818.910 kb on - strand, within DDA3937_RS21165 at 4818.910 kb on - strand, within DDA3937_RS21165 at 4818.912 kb on - strand, within DDA3937_RS21165 at 4819.012 kb on - strand, within DDA3937_RS21165 at 4819.012 kb on - strand, within DDA3937_RS21165 at 4819.085 kb on + strand, within DDA3937_RS21165 at 4819.086 kb on - strand, within DDA3937_RS21165 at 4819.237 kb on - strand at 4819.281 kb on + strand at 4819.281 kb on + strand at 4819.281 kb on + strand at 4819.281 kb on + strand at 4819.281 kb on + strand at 4819.281 kb on + strand at 4819.282 kb on - strand at 4819.282 kb on - strand at 4819.282 kb on - strand at 4819.324 kb on - strand at 4819.324 kb on - strand at 4819.324 kb on - strand at 4819.336 kb on + strand, within DDA3937_RS21170 at 4819.337 kb on - strand, within DDA3937_RS21170 at 4819.339 kb on + strand, within DDA3937_RS21170 at 4819.339 kb on + strand, within DDA3937_RS21170 at 4819.340 kb on - strand, within DDA3937_RS21170 at 4819.340 kb on - strand, within DDA3937_RS21170 at 4819.525 kb on - strand, within DDA3937_RS21170 at 4819.525 kb on - strand, within DDA3937_RS21170 at 4819.718 kb on + strand at 4819.718 kb on + strand at 4819.792 kb on + strand at 4819.792 kb on + strand at 4819.792 kb on + strand at 4819.793 kb on - strand at 4819.802 kb on + strand at 4819.802 kb on + strand at 4819.802 kb on + strand at 4819.802 kb on + strand at 4819.802 kb on + strand at 4819.802 kb on + strand at 4819.803 kb on - strand at 4819.803 kb on - strand at 4819.803 kb on - strand at 4819.851 kb on + strand at 4819.860 kb on + strand at 4819.860 kb on + strand at 4819.860 kb on + strand at 4819.860 kb on + strand at 4819.861 kb on - strand at 4819.868 kb on + strand at 4819.868 kb on + strand at 4819.868 kb on + strand at 4819.868 kb on + strand at 4819.868 kb on + strand at 4819.869 kb on - strand at 4819.869 kb on - strand at 4819.869 kb on - strand at 4819.869 kb on - strand at 4819.869 kb on - strand at 4819.869 kb on - strand at 4819.869 kb on - strand at 4819.869 kb on - strand at 4819.869 kb on - strand at 4819.869 kb on - strand at 4819.869 kb on - strand at 4819.869 kb on - strand at 4819.869 kb on - strand at 4819.869 kb on - strand at 4819.869 kb on - strand at 4819.967 kb on + strand, within DDA3937_RS21175 at 4819.967 kb on + strand, within DDA3937_RS21175 at 4819.967 kb on + strand, within DDA3937_RS21175 at 4819.996 kb on + strand, within DDA3937_RS21175 at 4819.996 kb on + strand, within DDA3937_RS21175 at 4820.002 kb on - strand, within DDA3937_RS21175
Per-strain Table
Position Strand Gene LocusTag Fraction Atlantic remove 4,817,021 + DDA3937_RS21160 0.46 -0.4 4,817,055 + DDA3937_RS21160 0.48 -0.1 4,817,055 + DDA3937_RS21160 0.48 -0.7 4,817,055 + DDA3937_RS21160 0.48 -0.4 4,817,055 + DDA3937_RS21160 0.48 -1.1 4,817,055 + DDA3937_RS21160 0.48 +0.7 4,817,055 + DDA3937_RS21160 0.48 +3.3 4,817,055 + DDA3937_RS21160 0.48 +0.6 4,817,055 + DDA3937_RS21160 0.48 +2.0 4,817,055 + DDA3937_RS21160 0.48 +1.2 4,817,055 + DDA3937_RS21160 0.48 +0.6 4,817,055 + DDA3937_RS21160 0.48 -0.5 4,817,056 - DDA3937_RS21160 0.48 -2.0 4,817,056 - DDA3937_RS21160 0.48 -1.1 4,817,056 - DDA3937_RS21160 0.48 -0.9 4,817,056 - DDA3937_RS21160 0.48 -1.0 4,817,056 - DDA3937_RS21160 0.48 -1.1 4,817,056 - DDA3937_RS21160 0.48 -1.4 4,817,059 + DDA3937_RS21160 0.48 +0.8 4,817,059 + DDA3937_RS21160 0.48 -1.3 4,817,059 + DDA3937_RS21160 0.48 +0.5 4,817,059 + DDA3937_RS21160 0.48 -1.1 4,817,060 - DDA3937_RS21160 0.48 +0.8 4,817,060 - DDA3937_RS21160 0.48 -1.2 4,817,060 - DDA3937_RS21160 0.48 -1.3 4,817,060 - DDA3937_RS21160 0.48 +0.1 4,817,060 - DDA3937_RS21160 0.48 -1.2 4,817,124 - DDA3937_RS21160 0.52 +0.2 4,817,165 + DDA3937_RS21160 0.54 +0.7 4,817,248 + DDA3937_RS21160 0.59 -0.4 4,817,248 + DDA3937_RS21160 0.59 -0.3 4,817,248 + DDA3937_RS21160 0.59 -1.0 4,817,248 + DDA3937_RS21160 0.59 +0.6 4,817,248 + DDA3937_RS21160 0.59 +0.1 4,817,249 - DDA3937_RS21160 0.59 -0.2 4,817,496 + DDA3937_RS21160 0.73 -0.5 4,817,496 + DDA3937_RS21160 0.73 +1.3 4,817,496 + DDA3937_RS21160 0.73 -0.1 4,817,496 + DDA3937_RS21160 0.73 -0.2 4,817,496 + DDA3937_RS21160 0.73 -0.9 4,817,496 + DDA3937_RS21160 0.73 -1.1 4,817,497 - DDA3937_RS21160 0.73 +0.2 4,817,497 - DDA3937_RS21160 0.73 +3.3 4,817,497 - DDA3937_RS21160 0.73 -1.2 4,817,497 - DDA3937_RS21160 0.73 -1.7 4,817,497 - DDA3937_RS21160 0.73 -1.4 4,817,497 - DDA3937_RS21160 0.73 -0.0 4,817,497 - DDA3937_RS21160 0.73 +0.7 4,817,497 - DDA3937_RS21160 0.73 +0.4 4,817,497 - DDA3937_RS21160 0.73 -1.2 4,817,497 - DDA3937_RS21160 0.73 +0.6 4,817,497 - DDA3937_RS21160 0.73 -0.0 4,817,537 + DDA3937_RS21160 0.75 +0.6 4,817,703 + DDA3937_RS21160 0.85 -0.8 4,817,703 + DDA3937_RS21160 0.85 -1.1 4,817,704 - DDA3937_RS21160 0.85 -1.2 4,817,704 - DDA3937_RS21160 0.85 +1.2 4,817,704 - DDA3937_RS21160 0.85 +0.1 4,817,775 + DDA3937_RS21160 0.89 +0.5 4,817,882 + -2.6 4,817,980 + -1.0 4,817,980 + +0.9 4,817,980 + -1.4 4,817,981 - -1.2 4,817,999 + -0.6 4,818,005 + +0.9 4,818,012 - +1.0 4,818,012 - +1.6 4,818,083 + +1.0 4,818,192 + DDA3937_RS21165 0.15 +0.3 4,818,192 + DDA3937_RS21165 0.15 +1.2 4,818,192 + DDA3937_RS21165 0.15 -0.3 4,818,193 - DDA3937_RS21165 0.15 +0.6 4,818,193 - DDA3937_RS21165 0.15 -1.6 4,818,193 - DDA3937_RS21165 0.15 -0.3 4,818,236 + DDA3937_RS21165 0.18 -3.3 4,818,339 - DDA3937_RS21165 0.26 -1.0 4,818,414 + DDA3937_RS21165 0.32 +1.5 4,818,414 + DDA3937_RS21165 0.32 +0.2 4,818,414 + DDA3937_RS21165 0.32 +0.1 4,818,433 - DDA3937_RS21165 0.33 -0.5 4,818,577 - DDA3937_RS21165 0.45 -1.4 4,818,577 - DDA3937_RS21165 0.45 +0.6 4,818,577 - DDA3937_RS21165 0.45 +0.2 4,818,641 + DDA3937_RS21165 0.50 -2.6 4,818,706 - DDA3937_RS21165 0.55 -3.0 4,818,825 + DDA3937_RS21165 0.64 +0.7 4,818,825 + DDA3937_RS21165 0.64 -0.1 4,818,825 + DDA3937_RS21165 0.64 -1.2 4,818,825 + DDA3937_RS21165 0.64 +0.8 4,818,825 + DDA3937_RS21165 0.64 -1.3 4,818,825 + DDA3937_RS21165 0.64 -0.4 4,818,825 + DDA3937_RS21165 0.64 -0.6 4,818,826 - DDA3937_RS21165 0.64 -0.1 4,818,826 - DDA3937_RS21165 0.64 -1.4 4,818,826 - DDA3937_RS21165 0.64 +3.1 4,818,826 - DDA3937_RS21165 0.64 +0.9 4,818,826 - DDA3937_RS21165 0.64 +7.5 4,818,831 + DDA3937_RS21165 0.65 +0.4 4,818,831 + DDA3937_RS21165 0.65 +0.4 4,818,831 + DDA3937_RS21165 0.65 +1.5 4,818,832 - DDA3937_RS21165 0.65 +0.6 4,818,841 + DDA3937_RS21165 0.65 +2.4 4,818,841 + DDA3937_RS21165 0.65 -1.3 4,818,842 - DDA3937_RS21165 0.65 -1.1 4,818,877 + DDA3937_RS21165 0.68 +0.7 4,818,910 - DDA3937_RS21165 0.71 +1.2 4,818,910 - DDA3937_RS21165 0.71 +1.2 4,818,910 - DDA3937_RS21165 0.71 -1.4 4,818,910 - DDA3937_RS21165 0.71 -1.0 4,818,910 - DDA3937_RS21165 0.71 -1.0 4,818,912 - DDA3937_RS21165 0.71 +0.4 4,819,012 - DDA3937_RS21165 0.79 -0.9 4,819,012 - DDA3937_RS21165 0.79 -1.2 4,819,085 + DDA3937_RS21165 0.84 -2.7 4,819,086 - DDA3937_RS21165 0.85 -1.8 4,819,237 - -0.0 4,819,281 + -0.6 4,819,281 + -0.8 4,819,281 + -0.6 4,819,281 + +0.1 4,819,281 + -2.1 4,819,281 + -0.5 4,819,282 - +0.2 4,819,282 - -2.4 4,819,282 - -0.2 4,819,324 - +2.7 4,819,324 - +0.8 4,819,324 - -1.2 4,819,336 + DDA3937_RS21170 0.11 -0.8 4,819,337 - DDA3937_RS21170 0.11 -1.1 4,819,339 + DDA3937_RS21170 0.12 +0.3 4,819,339 + DDA3937_RS21170 0.12 +0.4 4,819,340 - DDA3937_RS21170 0.12 +0.4 4,819,340 - DDA3937_RS21170 0.12 +0.9 4,819,525 - DDA3937_RS21170 0.55 -0.2 4,819,525 - DDA3937_RS21170 0.55 +0.3 4,819,718 + -1.2 4,819,718 + -1.8 4,819,792 + -1.3 4,819,792 + +0.9 4,819,792 + -0.1 4,819,793 - -2.1 4,819,802 + +0.9 4,819,802 + +0.2 4,819,802 + +0.4 4,819,802 + -1.9 4,819,802 + +0.2 4,819,802 + -0.1 4,819,803 - -1.4 4,819,803 - -1.2 4,819,803 - +0.4 4,819,851 + -0.3 4,819,860 + +0.4 4,819,860 + +0.5 4,819,860 + -0.4 4,819,860 + -0.5 4,819,861 - +0.9 4,819,868 + -0.7 4,819,868 + +2.9 4,819,868 + +0.9 4,819,868 + +0.3 4,819,868 + -2.5 4,819,869 - +0.3 4,819,869 - +0.1 4,819,869 - +0.1 4,819,869 - -0.5 4,819,869 - -0.2 4,819,869 - +3.2 4,819,869 - -1.3 4,819,869 - -1.4 4,819,869 - +0.4 4,819,869 - -1.2 4,819,869 - -0.5 4,819,869 - +0.4 4,819,869 - +0.8 4,819,869 - +0.4 4,819,869 - -0.6 4,819,967 + DDA3937_RS21175 0.12 +1.1 4,819,967 + DDA3937_RS21175 0.12 -1.3 4,819,967 + DDA3937_RS21175 0.12 -0.2 4,819,996 + DDA3937_RS21175 0.14 +0.8 4,819,996 + DDA3937_RS21175 0.14 -1.2 4,820,002 - DDA3937_RS21175 0.14 -0.4
Or see this region's nucleotide sequence