Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS21100

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
4,801,564	+		DDA3937_RS21090	0.85	-0.1
4,801,565	-		DDA3937_RS21090	0.85	-0.6
4,801,609	+		DDA3937_RS21090	0.88	-0.2
4,801,609	+		DDA3937_RS21090	0.88	+1.6
4,801,609	+		DDA3937_RS21090	0.88	-0.6
4,801,610	-		DDA3937_RS21090	0.88	+0.4
4,801,610	-		DDA3937_RS21090	0.88	-0.2
4,801,669	+				-1.2
4,801,669	+				-0.4
4,801,669	+				-0.8
4,801,669	+				-2.4
4,801,669	+				+0.6
4,801,669	+				-1.4
4,801,670	-				-1.6
4,801,670	-				-0.1
4,801,670	-				-1.0
4,801,724	+				+0.3
4,801,756	+				+1.2
4,801,757	-				-1.1
4,801,797	+				+0.1
4,801,797	+				-3.1
4,801,797	+				-0.2
4,801,797	+				-0.1
4,801,797	+				-1.1
4,801,797	+				-2.8
4,801,797	+				+0.1
4,801,797	+				-0.1
4,801,797	+				-0.7
4,801,797	+				-1.7
4,801,797	+				+0.9
4,801,798	-				-0.5
4,801,798	-				-0.1
4,801,798	-				+1.5
4,801,798	-				-1.8
4,801,798	-				+1.4
4,801,798	-				+0.7
4,801,798	-				+0.4
4,801,799	+				-0.5
4,801,799	+				-2.0
4,801,799	+				-0.1
4,801,799	+				+0.1
4,801,799	+				-0.1
4,801,799	+				-0.2
4,801,799	+				-2.0
4,801,799	+				-1.7
4,801,799	+				+0.6
4,801,799	+				-1.3
4,801,799	+				-0.1
4,801,799	+				+1.2
4,801,799	+				+0.8
4,801,799	+				+1.4
4,801,799	+				-0.8
4,801,799	+				+0.6
4,801,799	+				-1.5
4,801,799	+				+2.8
4,801,799	+				-0.2
4,801,799	+				+1.9
4,801,799	+				-1.9
4,801,799	+				-0.0
4,801,799	+				+1.6
4,801,799	+				-2.3
4,801,799	+				-1.4
4,801,799	+				-0.8
4,801,799	+				-0.3
4,801,800	-				-0.9
4,801,800	-				+0.8
4,801,800	-				+6.4
4,801,800	-				-1.4
4,801,800	-				-1.2
4,801,800	-				-1.3
4,801,800	-				-2.6
4,801,800	-				+2.1
4,801,800	-				-2.4
4,801,800	-				+1.2
4,801,800	-				-1.6
4,801,800	-				+1.6
4,801,800	-				-1.8
4,801,800	-				-2.8
4,801,800	-				+0.1
4,801,800	-				-0.1
4,801,800	-				-2.0
4,801,800	-				-0.5
4,801,800	-				+1.4
4,801,800	-				+0.0
4,801,800	-				-2.1
4,801,800	-				-2.0
4,801,800	-				-1.6
4,801,800	-				+0.1
4,801,800	-				-1.4
4,801,800	-				+0.9
4,801,800	-				-0.7
4,801,831	+				-1.1
4,801,835	+				-0.1
4,801,835	+				+0.9
4,801,888	-				-1.4
4,801,907	+				+0.5
4,801,907	+				+0.4
4,801,907	+				-0.3
4,801,971	+		DDA3937_RS21095	0.28	-0.5
4,802,075	-		DDA3937_RS21095	0.69	+0.2
4,802,227	-				-1.6
4,802,331	+				-1.1
4,802,332	-				-1.4
4,802,346	+				+0.8
4,802,346	+				-1.5
4,802,347	-				-1.1
4,802,347	-				-2.0
4,802,350	+				+3.4
4,802,350	+				-0.3
4,802,350	+				-1.2
4,802,351	-				+0.4
4,802,351	-				-0.9
4,802,351	-				-0.7
4,802,351	-				+0.1
4,802,394	+				-1.6
4,802,395	-				+1.3
4,802,395	-				+1.9
4,802,406	-				+0.7
4,802,406	-				-3.1
4,802,406	-				-1.9
4,802,406	-				+1.4
4,802,408	-				-2.4
4,802,408	-				-0.1
4,802,451	+				-1.9
4,802,451	+				-1.5
4,802,607	+				+0.2
4,802,630	+				-0.8
4,802,630	+				-0.4
4,802,631	-				-0.2
4,802,631	-				-2.3
4,802,658	+		DDA3937_RS21100	0.11	-0.9
4,802,703	+		DDA3937_RS21100	0.14	+0.2
4,802,703	+		DDA3937_RS21100	0.14	-0.2
4,802,757	-		DDA3937_RS21100	0.17	-1.5
4,802,757	-		DDA3937_RS21100	0.17	-1.1
4,802,778	+		DDA3937_RS21100	0.18	+0.4
4,802,778	+		DDA3937_RS21100	0.18	-1.2
4,802,778	+		DDA3937_RS21100	0.18	+0.4
4,802,778	+		DDA3937_RS21100	0.18	-3.6
4,802,779	-		DDA3937_RS21100	0.18	-0.0
4,802,779	-		DDA3937_RS21100	0.18	-0.9
4,802,779	-		DDA3937_RS21100	0.18	-1.5
4,802,862	+		DDA3937_RS21100	0.23	-0.4
4,802,862	+		DDA3937_RS21100	0.23	-2.6
4,802,862	+		DDA3937_RS21100	0.23	+0.9
4,802,862	+		DDA3937_RS21100	0.23	-0.4
4,802,912	+		DDA3937_RS21100	0.26	+0.4
4,802,912	+		DDA3937_RS21100	0.26	+1.6
4,802,912	+		DDA3937_RS21100	0.26	+0.9
4,802,913	-		DDA3937_RS21100	0.26	-2.9
4,802,913	-		DDA3937_RS21100	0.26	-2.4
4,802,913	-		DDA3937_RS21100	0.26	-0.2
4,802,913	-		DDA3937_RS21100	0.26	+0.3
4,802,913	-		DDA3937_RS21100	0.26	-1.0
4,802,916	+		DDA3937_RS21100	0.26	+3.4
4,802,916	+		DDA3937_RS21100	0.26	-1.1
4,802,916	+		DDA3937_RS21100	0.26	+0.6
4,802,916	+		DDA3937_RS21100	0.26	-1.2
4,802,917	-		DDA3937_RS21100	0.27	-1.6
4,802,917	-		DDA3937_RS21100	0.27	-0.9
4,802,917	-		DDA3937_RS21100	0.27	-1.4
4,802,917	-		DDA3937_RS21100	0.27	-0.6
4,802,917	-		DDA3937_RS21100	0.27	+0.8
4,802,917	-		DDA3937_RS21100	0.27	-0.6
4,802,959	-		DDA3937_RS21100	0.29	-0.2
4,803,147	+		DDA3937_RS21100	0.41	-0.2
4,803,147	+		DDA3937_RS21100	0.41	-0.8
4,803,147	+		DDA3937_RS21100	0.41	+0.7
4,803,189	+		DDA3937_RS21100	0.43	+0.5
4,803,207	+		DDA3937_RS21100	0.44	+0.0
4,803,207	+		DDA3937_RS21100	0.44	-0.7
4,803,207	+		DDA3937_RS21100	0.44	+0.6
4,803,208	-		DDA3937_RS21100	0.44	-0.8
4,803,208	-		DDA3937_RS21100	0.44	-0.3
4,803,208	-		DDA3937_RS21100	0.44	+0.3
4,803,288	+		DDA3937_RS21100	0.49	+0.4
4,803,288	+		DDA3937_RS21100	0.49	-0.3
4,803,288	+		DDA3937_RS21100	0.49	-1.1
4,803,289	-		DDA3937_RS21100	0.49	-0.3
4,803,327	+		DDA3937_RS21100	0.51	-1.9
4,803,327	+		DDA3937_RS21100	0.51	-0.9
4,803,456	+		DDA3937_RS21100	0.59	-0.9
4,803,457	-		DDA3937_RS21100	0.59	+1.1
4,803,464	+		DDA3937_RS21100	0.60	-0.6
4,803,468	+		DDA3937_RS21100	0.60	-0.6
4,803,468	+		DDA3937_RS21100	0.60	-0.2
4,803,469	-		DDA3937_RS21100	0.60	+3.1
4,803,469	-		DDA3937_RS21100	0.60	-1.1
4,803,640	-		DDA3937_RS21100	0.70	-0.5
4,803,834	+		DDA3937_RS21100	0.82	-1.5
4,803,834	+		DDA3937_RS21100	0.82	-1.4
4,803,834	+		DDA3937_RS21100	0.82	+1.9
4,803,834	+		DDA3937_RS21100	0.82	+0.4
4,803,835	-		DDA3937_RS21100	0.82	+0.1
4,803,838	-		DDA3937_RS21100	0.83	-0.8
4,803,982	+				-1.5
4,803,982	+				-1.3
4,803,983	-				-0.4
4,803,990	+				+0.5
4,803,990	+				-0.4
4,803,991	-				-1.1
4,804,008	+				-0.5
4,804,008	+				-0.5
4,804,008	+				-0.4
4,804,009	-				-2.1
4,804,101	+				+0.6
4,804,102	-				+0.4
4,804,122	+				+0.4
4,804,166	+				+1.4
4,804,166	+				-0.6
4,804,166	+				-0.8
4,804,167	-				-0.9
4,804,167	-				+0.2
4,804,167	-				+0.0
4,804,167	-				-0.2
4,804,167	-				-1.5
4,804,167	-				+0.5
4,804,167	-				-1.9
4,804,167	-				-1.6
4,804,216	+				-0.2
4,804,216	+				+0.4
4,804,217	-				+0.6
4,804,217	-				+0.1
4,804,217	-				-1.2
4,804,444	+		DDA3937_RS21105	0.31	+0.4
4,804,594	+		DDA3937_RS21105	0.47	-0.6
4,804,594	+		DDA3937_RS21105	0.47	+0.1
4,804,595	-		DDA3937_RS21105	0.47	-1.4
4,804,595	-		DDA3937_RS21105	0.47	+0.2
4,804,595	-		DDA3937_RS21105	0.47	-0.2
4,804,595	-		DDA3937_RS21105	0.47	-0.6
4,804,983	+		DDA3937_RS21105	0.88	-1.2
4,804,983	+		DDA3937_RS21105	0.88	-0.5
4,805,051	+				+1.2
4,805,052	-				-1.1
4,805,096	+				-0.4