Experiment: Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS20650 and DDA3937_RS20655 are separated by 22 nucleotides DDA3937_RS20655 and DDA3937_RS20660 are separated by 97 nucleotides DDA3937_RS20660 and DDA3937_RS20665 are separated by 188 nucleotides DDA3937_RS20665 and DDA3937_RS20675 overlap by 4 nucleotides DDA3937_RS20675 and DDA3937_RS20680 are separated by 69 nucleotides
DDA3937_RS20650: DDA3937_RS20650 - helix-turn-helix transcriptional regulator, at 4,698,000 to 4,698,317
_RS20650
DDA3937_RS20655: DDA3937_RS20655 - helix-turn-helix domain-containing protein, at 4,698,340 to 4,698,597
_RS20655
DDA3937_RS20660: DDA3937_RS20660 - helix-turn-helix transcriptional regulator, at 4,698,695 to 4,699,015
_RS20660
DDA3937_RS20665: DDA3937_RS20665 - glycoside hydrolase family 19 protein, at 4,699,204 to 4,701,582
_RS20665
DDA3937_RS20675: DDA3937_RS20675 - hypothetical protein, at 4,701,579 to 4,702,055
_RS20675
DDA3937_RS20680: DDA3937_RS20680 - hypothetical protein, at 4,702,125 to 4,702,868
_RS20680
Position (kb) 4699
4700
4701
4702 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4698.219 kb on + strand, within DDA3937_RS20650 at 4698.219 kb on + strand, within DDA3937_RS20650 at 4698.253 kb on + strand, within DDA3937_RS20650 at 4698.254 kb on - strand, within DDA3937_RS20650 at 4698.254 kb on - strand, within DDA3937_RS20650 at 4698.254 kb on - strand, within DDA3937_RS20650 at 4698.254 kb on - strand, within DDA3937_RS20650 at 4698.254 kb on - strand, within DDA3937_RS20650 at 4698.311 kb on + strand at 4698.311 kb on + strand at 4698.358 kb on + strand at 4698.358 kb on + strand at 4698.398 kb on + strand, within DDA3937_RS20655 at 4698.399 kb on - strand, within DDA3937_RS20655 at 4698.401 kb on + strand, within DDA3937_RS20655 at 4698.402 kb on - strand, within DDA3937_RS20655 at 4698.402 kb on - strand, within DDA3937_RS20655 at 4698.416 kb on - strand, within DDA3937_RS20655 at 4698.543 kb on + strand, within DDA3937_RS20655 at 4698.543 kb on + strand, within DDA3937_RS20655 at 4698.543 kb on + strand, within DDA3937_RS20655 at 4698.544 kb on - strand, within DDA3937_RS20655 at 4698.544 kb on - strand, within DDA3937_RS20655 at 4698.544 kb on - strand, within DDA3937_RS20655 at 4698.544 kb on - strand, within DDA3937_RS20655 at 4698.608 kb on - strand at 4698.608 kb on - strand at 4698.608 kb on - strand at 4698.739 kb on + strand, within DDA3937_RS20660 at 4698.914 kb on + strand, within DDA3937_RS20660 at 4698.914 kb on + strand, within DDA3937_RS20660 at 4698.949 kb on - strand, within DDA3937_RS20660 at 4698.949 kb on - strand, within DDA3937_RS20660 at 4698.997 kb on - strand at 4699.014 kb on - strand at 4699.014 kb on - strand at 4699.017 kb on - strand at 4699.051 kb on + strand at 4699.051 kb on + strand at 4699.051 kb on + strand at 4699.051 kb on + strand at 4699.051 kb on + strand at 4699.051 kb on + strand at 4699.052 kb on - strand at 4699.052 kb on - strand at 4699.052 kb on - strand at 4699.063 kb on + strand at 4699.063 kb on + strand at 4699.063 kb on + strand at 4699.063 kb on + strand at 4699.063 kb on + strand at 4699.063 kb on + strand at 4699.064 kb on - strand at 4699.064 kb on - strand at 4699.064 kb on - strand at 4699.073 kb on + strand at 4699.074 kb on - strand at 4699.074 kb on - strand at 4699.119 kb on - strand at 4699.119 kb on - strand at 4699.122 kb on + strand at 4699.122 kb on + strand at 4699.123 kb on - strand at 4699.123 kb on - strand at 4699.123 kb on - strand at 4699.130 kb on - strand at 4699.130 kb on - strand at 4699.210 kb on - strand at 4699.210 kb on - strand at 4699.210 kb on - strand at 4699.246 kb on + strand at 4699.353 kb on + strand at 4699.354 kb on - strand at 4699.370 kb on + strand at 4699.413 kb on + strand at 4699.414 kb on - strand at 4699.449 kb on + strand, within DDA3937_RS20665 at 4699.449 kb on + strand, within DDA3937_RS20665 at 4699.456 kb on + strand, within DDA3937_RS20665 at 4699.480 kb on + strand, within DDA3937_RS20665 at 4699.481 kb on - strand, within DDA3937_RS20665 at 4699.481 kb on - strand, within DDA3937_RS20665 at 4699.527 kb on + strand, within DDA3937_RS20665 at 4699.527 kb on + strand, within DDA3937_RS20665 at 4699.576 kb on + strand, within DDA3937_RS20665 at 4699.577 kb on - strand, within DDA3937_RS20665 at 4699.577 kb on - strand, within DDA3937_RS20665 at 4699.578 kb on + strand, within DDA3937_RS20665 at 4699.579 kb on - strand, within DDA3937_RS20665 at 4699.579 kb on - strand, within DDA3937_RS20665 at 4699.579 kb on - strand, within DDA3937_RS20665 at 4699.579 kb on - strand, within DDA3937_RS20665 at 4699.604 kb on - strand, within DDA3937_RS20665 at 4699.647 kb on + strand, within DDA3937_RS20665 at 4699.647 kb on + strand, within DDA3937_RS20665 at 4699.648 kb on - strand, within DDA3937_RS20665 at 4699.666 kb on + strand, within DDA3937_RS20665 at 4699.667 kb on - strand, within DDA3937_RS20665 at 4699.667 kb on - strand, within DDA3937_RS20665 at 4699.714 kb on - strand, within DDA3937_RS20665 at 4699.736 kb on + strand, within DDA3937_RS20665 at 4699.737 kb on - strand, within DDA3937_RS20665 at 4699.737 kb on - strand, within DDA3937_RS20665 at 4699.770 kb on - strand, within DDA3937_RS20665 at 4699.782 kb on + strand, within DDA3937_RS20665 at 4699.782 kb on + strand at 4699.782 kb on + strand, within DDA3937_RS20665 at 4699.782 kb on + strand, within DDA3937_RS20665 at 4699.783 kb on - strand, within DDA3937_RS20665 at 4699.783 kb on - strand, within DDA3937_RS20665 at 4699.783 kb on - strand, within DDA3937_RS20665 at 4699.786 kb on - strand, within DDA3937_RS20665 at 4699.863 kb on + strand, within DDA3937_RS20665 at 4699.940 kb on - strand, within DDA3937_RS20665 at 4699.940 kb on - strand, within DDA3937_RS20665 at 4700.013 kb on + strand, within DDA3937_RS20665 at 4700.095 kb on - strand, within DDA3937_RS20665 at 4700.171 kb on + strand, within DDA3937_RS20665 at 4700.174 kb on - strand at 4700.279 kb on + strand, within DDA3937_RS20665 at 4700.293 kb on - strand, within DDA3937_RS20665 at 4700.319 kb on + strand, within DDA3937_RS20665 at 4700.319 kb on + strand, within DDA3937_RS20665 at 4700.320 kb on - strand, within DDA3937_RS20665 at 4700.328 kb on + strand, within DDA3937_RS20665 at 4700.366 kb on + strand, within DDA3937_RS20665 at 4700.367 kb on - strand, within DDA3937_RS20665 at 4700.367 kb on - strand, within DDA3937_RS20665 at 4700.370 kb on + strand, within DDA3937_RS20665 at 4700.370 kb on + strand, within DDA3937_RS20665 at 4700.370 kb on + strand, within DDA3937_RS20665 at 4700.371 kb on - strand, within DDA3937_RS20665 at 4700.382 kb on + strand, within DDA3937_RS20665 at 4700.519 kb on - strand, within DDA3937_RS20665 at 4700.598 kb on + strand, within DDA3937_RS20665 at 4700.598 kb on + strand, within DDA3937_RS20665 at 4700.629 kb on - strand, within DDA3937_RS20665 at 4700.698 kb on - strand, within DDA3937_RS20665 at 4700.718 kb on + strand, within DDA3937_RS20665 at 4700.750 kb on - strand, within DDA3937_RS20665 at 4700.854 kb on - strand, within DDA3937_RS20665 at 4700.945 kb on - strand, within DDA3937_RS20665 at 4701.093 kb on + strand, within DDA3937_RS20665 at 4701.205 kb on + strand, within DDA3937_RS20665 at 4701.304 kb on + strand, within DDA3937_RS20665 at 4701.497 kb on + strand at 4701.544 kb on + strand at 4701.751 kb on + strand, within DDA3937_RS20675 at 4701.751 kb on + strand, within DDA3937_RS20675 at 4701.759 kb on + strand, within DDA3937_RS20675 at 4701.887 kb on - strand, within DDA3937_RS20675 at 4702.062 kb on - strand at 4702.104 kb on - strand at 4702.106 kb on + strand at 4702.106 kb on + strand at 4702.152 kb on - strand at 4702.152 kb on - strand at 4702.205 kb on - strand, within DDA3937_RS20680 at 4702.228 kb on + strand, within DDA3937_RS20680 at 4702.228 kb on + strand, within DDA3937_RS20680 at 4702.258 kb on - strand, within DDA3937_RS20680 at 4702.307 kb on - strand, within DDA3937_RS20680 at 4702.320 kb on - strand, within DDA3937_RS20680 at 4702.335 kb on - strand, within DDA3937_RS20680 at 4702.419 kb on - strand, within DDA3937_RS20680 at 4702.471 kb on - strand, within DDA3937_RS20680 at 4702.501 kb on - strand, within DDA3937_RS20680 at 4702.568 kb on + strand, within DDA3937_RS20680
Per-strain Table
Position Strand Gene LocusTag Fraction Atlantic remove 4,698,219 + DDA3937_RS20650 0.69 -0.9 4,698,219 + DDA3937_RS20650 0.69 -1.1 4,698,253 + DDA3937_RS20650 0.80 -0.3 4,698,254 - DDA3937_RS20650 0.80 -1.2 4,698,254 - DDA3937_RS20650 0.80 +0.3 4,698,254 - DDA3937_RS20650 0.80 -2.0 4,698,254 - DDA3937_RS20650 0.80 -0.4 4,698,254 - DDA3937_RS20650 0.80 -1.8 4,698,311 + -1.0 4,698,311 + -2.3 4,698,358 + -1.3 4,698,358 + -1.6 4,698,398 + DDA3937_RS20655 0.22 -0.1 4,698,399 - DDA3937_RS20655 0.23 +0.6 4,698,401 + DDA3937_RS20655 0.24 -1.5 4,698,402 - DDA3937_RS20655 0.24 -2.0 4,698,402 - DDA3937_RS20655 0.24 -0.2 4,698,416 - DDA3937_RS20655 0.29 -0.7 4,698,543 + DDA3937_RS20655 0.79 +0.2 4,698,543 + DDA3937_RS20655 0.79 -0.2 4,698,543 + DDA3937_RS20655 0.79 -1.5 4,698,544 - DDA3937_RS20655 0.79 +0.9 4,698,544 - DDA3937_RS20655 0.79 -2.1 4,698,544 - DDA3937_RS20655 0.79 +0.3 4,698,544 - DDA3937_RS20655 0.79 -0.9 4,698,608 - -0.1 4,698,608 - -0.7 4,698,608 - +1.5 4,698,739 + DDA3937_RS20660 0.14 -0.4 4,698,914 + DDA3937_RS20660 0.68 -0.9 4,698,914 + DDA3937_RS20660 0.68 -1.2 4,698,949 - DDA3937_RS20660 0.79 -1.4 4,698,949 - DDA3937_RS20660 0.79 -2.2 4,698,997 - +0.6 4,699,014 - -0.2 4,699,014 - -0.3 4,699,017 - +0.7 4,699,051 + -0.7 4,699,051 + -2.7 4,699,051 + +0.6 4,699,051 + -0.7 4,699,051 + +0.2 4,699,051 + +0.3 4,699,052 - -0.2 4,699,052 - -0.7 4,699,052 - -1.0 4,699,063 + -1.7 4,699,063 + -2.0 4,699,063 + -2.2 4,699,063 + +0.4 4,699,063 + -1.3 4,699,063 + -0.6 4,699,064 - -1.4 4,699,064 - +0.3 4,699,064 - -0.0 4,699,073 + +0.3 4,699,074 - -1.7 4,699,074 - -1.1 4,699,119 - -2.4 4,699,119 - -0.6 4,699,122 + -2.4 4,699,122 + +0.5 4,699,123 - -1.3 4,699,123 - +0.4 4,699,123 - -0.4 4,699,130 - -0.4 4,699,130 - -0.8 4,699,210 - -0.1 4,699,210 - -0.7 4,699,210 - +0.1 4,699,246 + -1.3 4,699,353 + -1.2 4,699,354 - -2.1 4,699,370 + -2.3 4,699,413 + -1.8 4,699,414 - -2.2 4,699,449 + DDA3937_RS20665 0.10 -1.2 4,699,449 + DDA3937_RS20665 0.10 +0.2 4,699,456 + DDA3937_RS20665 0.11 -0.6 4,699,480 + DDA3937_RS20665 0.12 -1.9 4,699,481 - DDA3937_RS20665 0.12 +1.9 4,699,481 - DDA3937_RS20665 0.12 +0.1 4,699,527 + DDA3937_RS20665 0.14 -0.5 4,699,527 + DDA3937_RS20665 0.14 -0.4 4,699,576 + DDA3937_RS20665 0.16 -0.1 4,699,577 - DDA3937_RS20665 0.16 +0.8 4,699,577 - DDA3937_RS20665 0.16 -0.1 4,699,578 + DDA3937_RS20665 0.16 -0.1 4,699,579 - DDA3937_RS20665 0.16 +0.2 4,699,579 - DDA3937_RS20665 0.16 -0.2 4,699,579 - DDA3937_RS20665 0.16 -1.1 4,699,579 - DDA3937_RS20665 0.16 -0.1 4,699,604 - DDA3937_RS20665 0.17 +0.1 4,699,647 + DDA3937_RS20665 0.19 -1.4 4,699,647 + DDA3937_RS20665 0.19 -0.4 4,699,648 - DDA3937_RS20665 0.19 -0.9 4,699,666 + DDA3937_RS20665 0.19 -1.6 4,699,667 - DDA3937_RS20665 0.19 +0.1 4,699,667 - DDA3937_RS20665 0.19 +0.6 4,699,714 - DDA3937_RS20665 0.21 +0.6 4,699,736 + DDA3937_RS20665 0.22 +0.6 4,699,737 - DDA3937_RS20665 0.22 -1.0 4,699,737 - DDA3937_RS20665 0.22 -1.5 4,699,770 - DDA3937_RS20665 0.24 +0.5 4,699,782 + DDA3937_RS20665 0.24 -1.3 4,699,782 + -0.1 4,699,782 + DDA3937_RS20665 0.24 -0.2 4,699,782 + DDA3937_RS20665 0.24 -0.7 4,699,783 - DDA3937_RS20665 0.24 -1.2 4,699,783 - DDA3937_RS20665 0.24 +0.1 4,699,783 - DDA3937_RS20665 0.24 -2.6 4,699,786 - DDA3937_RS20665 0.24 -0.5 4,699,863 + DDA3937_RS20665 0.28 -1.2 4,699,940 - DDA3937_RS20665 0.31 +0.8 4,699,940 - DDA3937_RS20665 0.31 -0.8 4,700,013 + DDA3937_RS20665 0.34 -0.9 4,700,095 - DDA3937_RS20665 0.37 +0.2 4,700,171 + DDA3937_RS20665 0.41 -2.9 4,700,174 - +2.9 4,700,279 + DDA3937_RS20665 0.45 -0.9 4,700,293 - DDA3937_RS20665 0.46 -0.3 4,700,319 + DDA3937_RS20665 0.47 -0.1 4,700,319 + DDA3937_RS20665 0.47 -1.7 4,700,320 - DDA3937_RS20665 0.47 +0.1 4,700,328 + DDA3937_RS20665 0.47 -0.8 4,700,366 + DDA3937_RS20665 0.49 -2.4 4,700,367 - DDA3937_RS20665 0.49 +0.1 4,700,367 - DDA3937_RS20665 0.49 -1.8 4,700,370 + DDA3937_RS20665 0.49 -1.8 4,700,370 + DDA3937_RS20665 0.49 +0.0 4,700,370 + DDA3937_RS20665 0.49 +0.6 4,700,371 - DDA3937_RS20665 0.49 -0.4 4,700,382 + DDA3937_RS20665 0.50 -1.8 4,700,519 - DDA3937_RS20665 0.55 +2.2 4,700,598 + DDA3937_RS20665 0.59 -0.7 4,700,598 + DDA3937_RS20665 0.59 -0.5 4,700,629 - DDA3937_RS20665 0.60 +0.5 4,700,698 - DDA3937_RS20665 0.63 -0.4 4,700,718 + DDA3937_RS20665 0.64 -0.6 4,700,750 - DDA3937_RS20665 0.65 -1.2 4,700,854 - DDA3937_RS20665 0.69 -1.4 4,700,945 - DDA3937_RS20665 0.73 -0.4 4,701,093 + DDA3937_RS20665 0.79 -1.6 4,701,205 + DDA3937_RS20665 0.84 +1.8 4,701,304 + DDA3937_RS20665 0.88 -1.1 4,701,497 + +0.8 4,701,544 + -0.5 4,701,751 + DDA3937_RS20675 0.36 +2.5 4,701,751 + DDA3937_RS20675 0.36 +1.9 4,701,759 + DDA3937_RS20675 0.38 -0.4 4,701,887 - DDA3937_RS20675 0.65 -0.6 4,702,062 - +1.9 4,702,104 - +1.8 4,702,106 + -0.4 4,702,106 + -0.2 4,702,152 - -0.1 4,702,152 - +0.7 4,702,205 - DDA3937_RS20680 0.11 -1.0 4,702,228 + DDA3937_RS20680 0.14 +0.1 4,702,228 + DDA3937_RS20680 0.14 -2.3 4,702,258 - DDA3937_RS20680 0.18 -0.4 4,702,307 - DDA3937_RS20680 0.24 -0.9 4,702,320 - DDA3937_RS20680 0.26 +0.1 4,702,335 - DDA3937_RS20680 0.28 -0.2 4,702,419 - DDA3937_RS20680 0.40 +1.8 4,702,471 - DDA3937_RS20680 0.47 -2.0 4,702,501 - DDA3937_RS20680 0.51 +0.3 4,702,568 + DDA3937_RS20680 0.60 -0.2
Or see this region's nucleotide sequence