Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS20640

Experiment: Atlantic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS20635 and DDA3937_RS20640 are separated by 128 nucleotidesDDA3937_RS20640 and DDA3937_RS20645 are separated by 129 nucleotides DDA3937_RS20635: DDA3937_RS20635 - membrane dipeptidase, at 4,694,720 to 4,695,802 _RS20635 DDA3937_RS20640: DDA3937_RS20640 - LysR family transcriptional regulator, at 4,695,931 to 4,696,839 _RS20640 DDA3937_RS20645: DDA3937_RS20645 - YicC family protein, at 4,696,969 to 4,697,832 _RS20645 Position (kb) 4695 4696 4697Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 4694.976 kb on + strand, within DDA3937_RS20635at 4694.977 kb on - strand, within DDA3937_RS20635at 4694.979 kb on + strand, within DDA3937_RS20635at 4695.184 kb on + strand, within DDA3937_RS20635at 4695.184 kb on + strand, within DDA3937_RS20635at 4695.191 kb on + strand, within DDA3937_RS20635at 4695.594 kb on + strand, within DDA3937_RS20635at 4695.594 kb on + strand, within DDA3937_RS20635at 4695.594 kb on + strand, within DDA3937_RS20635at 4695.595 kb on - strand, within DDA3937_RS20635at 4695.599 kb on + strand, within DDA3937_RS20635at 4695.599 kb on + strand, within DDA3937_RS20635at 4695.599 kb on + strand, within DDA3937_RS20635at 4695.600 kb on - strand, within DDA3937_RS20635at 4695.600 kb on - strand, within DDA3937_RS20635at 4695.600 kb on - strand, within DDA3937_RS20635at 4695.729 kb on - strandat 4695.778 kb on - strandat 4695.871 kb on + strandat 4695.930 kb on + strandat 4696.121 kb on + strand, within DDA3937_RS20640at 4696.144 kb on + strand, within DDA3937_RS20640at 4696.145 kb on - strand, within DDA3937_RS20640at 4696.262 kb on + strand, within DDA3937_RS20640at 4696.262 kb on + strand, within DDA3937_RS20640at 4696.263 kb on - strand, within DDA3937_RS20640at 4696.263 kb on - strand, within DDA3937_RS20640at 4696.422 kb on + strand, within DDA3937_RS20640at 4696.422 kb on + strand, within DDA3937_RS20640at 4696.422 kb on + strand, within DDA3937_RS20640at 4696.422 kb on + strand, within DDA3937_RS20640at 4696.422 kb on + strand, within DDA3937_RS20640at 4696.422 kb on + strand, within DDA3937_RS20640at 4696.422 kb on + strand, within DDA3937_RS20640at 4696.422 kb on + strand, within DDA3937_RS20640at 4696.422 kb on + strand, within DDA3937_RS20640at 4696.422 kb on + strand, within DDA3937_RS20640at 4696.423 kb on - strand, within DDA3937_RS20640at 4696.423 kb on - strand, within DDA3937_RS20640at 4696.423 kb on - strand, within DDA3937_RS20640at 4696.423 kb on - strand, within DDA3937_RS20640at 4696.423 kb on - strand, within DDA3937_RS20640at 4696.423 kb on - strand, within DDA3937_RS20640at 4696.423 kb on - strand, within DDA3937_RS20640at 4696.423 kb on - strand, within DDA3937_RS20640at 4696.423 kb on - strand, within DDA3937_RS20640at 4696.583 kb on - strand, within DDA3937_RS20640at 4696.583 kb on - strandat 4696.594 kb on + strand, within DDA3937_RS20640at 4696.595 kb on - strand, within DDA3937_RS20640at 4696.595 kb on - strand, within DDA3937_RS20640at 4696.837 kb on + strandat 4696.933 kb on - strandat 4696.934 kb on + strandat 4696.934 kb on + strandat 4696.934 kb on + strandat 4696.934 kb on + strandat 4696.934 kb on + strandat 4696.934 kb on + strandat 4696.934 kb on + strandat 4696.934 kb on + strandat 4696.935 kb on - strandat 4696.935 kb on - strandat 4696.935 kb on - strandat 4696.935 kb on - strandat 4696.935 kb on - strandat 4696.935 kb on - strandat 4696.939 kb on - strandat 4696.953 kb on + strandat 4696.960 kb on + strandat 4696.960 kb on + strandat 4696.960 kb on + strandat 4696.960 kb on + strandat 4696.960 kb on + strandat 4696.960 kb on + strandat 4696.961 kb on - strandat 4696.961 kb on - strandat 4696.961 kb on - strandat 4696.961 kb on - strandat 4696.961 kb on - strandat 4696.961 kb on - strandat 4696.961 kb on - strandat 4696.961 kb on - strandat 4696.978 kb on - strandat 4696.990 kb on + strandat 4697.060 kb on - strand, within DDA3937_RS20645at 4697.071 kb on + strand, within DDA3937_RS20645at 4697.071 kb on + strand, within DDA3937_RS20645at 4697.071 kb on + strandat 4697.071 kb on + strand, within DDA3937_RS20645at 4697.071 kb on + strand, within DDA3937_RS20645at 4697.071 kb on + strand, within DDA3937_RS20645at 4697.071 kb on + strand, within DDA3937_RS20645at 4697.071 kb on + strand, within DDA3937_RS20645at 4697.071 kb on + strand, within DDA3937_RS20645at 4697.072 kb on - strand, within DDA3937_RS20645at 4697.072 kb on - strand, within DDA3937_RS20645at 4697.072 kb on - strand, within DDA3937_RS20645at 4697.072 kb on - strand, within DDA3937_RS20645at 4697.072 kb on - strand, within DDA3937_RS20645at 4697.072 kb on - strand, within DDA3937_RS20645at 4697.072 kb on - strand, within DDA3937_RS20645at 4697.103 kb on - strand, within DDA3937_RS20645at 4697.103 kb on - strand, within DDA3937_RS20645at 4697.391 kb on + strand, within DDA3937_RS20645at 4697.391 kb on + strandat 4697.392 kb on - strand, within DDA3937_RS20645at 4697.392 kb on - strand, within DDA3937_RS20645at 4697.392 kb on - strand, within DDA3937_RS20645at 4697.392 kb on - strand, within DDA3937_RS20645at 4697.392 kb on - strand, within DDA3937_RS20645at 4697.392 kb on - strand, within DDA3937_RS20645at 4697.586 kb on - strand, within DDA3937_RS20645at 4697.653 kb on + strand, within DDA3937_RS20645at 4697.700 kb on + strand, within DDA3937_RS20645at 4697.700 kb on + strand, within DDA3937_RS20645at 4697.701 kb on - strand, within DDA3937_RS20645

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Per-strain Table

Position Strand Gene LocusTag Fraction Atlantic
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4,694,976 + DDA3937_RS20635 0.24 -1.2
4,694,977 - DDA3937_RS20635 0.24 -1.0
4,694,979 + DDA3937_RS20635 0.24 -2.5
4,695,184 + DDA3937_RS20635 0.43 -0.3
4,695,184 + DDA3937_RS20635 0.43 +1.3
4,695,191 + DDA3937_RS20635 0.43 +0.1
4,695,594 + DDA3937_RS20635 0.81 -0.2
4,695,594 + DDA3937_RS20635 0.81 -0.8
4,695,594 + DDA3937_RS20635 0.81 +1.1
4,695,595 - DDA3937_RS20635 0.81 +0.5
4,695,599 + DDA3937_RS20635 0.81 -2.2
4,695,599 + DDA3937_RS20635 0.81 -0.7
4,695,599 + DDA3937_RS20635 0.81 -1.1
4,695,600 - DDA3937_RS20635 0.81 -0.1
4,695,600 - DDA3937_RS20635 0.81 -0.4
4,695,600 - DDA3937_RS20635 0.81 +1.5
4,695,729 - +2.2
4,695,778 - -0.1
4,695,871 + -2.5
4,695,930 + +1.1
4,696,121 + DDA3937_RS20640 0.21 -2.5
4,696,144 + DDA3937_RS20640 0.23 -0.9
4,696,145 - DDA3937_RS20640 0.24 -0.2
4,696,262 + DDA3937_RS20640 0.36 -0.1
4,696,262 + DDA3937_RS20640 0.36 +0.8
4,696,263 - DDA3937_RS20640 0.37 +0.5
4,696,263 - DDA3937_RS20640 0.37 -2.3
4,696,422 + DDA3937_RS20640 0.54 -2.1
4,696,422 + DDA3937_RS20640 0.54 +0.3
4,696,422 + DDA3937_RS20640 0.54 -1.1
4,696,422 + DDA3937_RS20640 0.54 -2.2
4,696,422 + DDA3937_RS20640 0.54 -0.8
4,696,422 + DDA3937_RS20640 0.54 +1.2
4,696,422 + DDA3937_RS20640 0.54 +1.1
4,696,422 + DDA3937_RS20640 0.54 -0.4
4,696,422 + DDA3937_RS20640 0.54 +0.1
4,696,422 + DDA3937_RS20640 0.54 -1.7
4,696,423 - DDA3937_RS20640 0.54 -1.1
4,696,423 - DDA3937_RS20640 0.54 +0.7
4,696,423 - DDA3937_RS20640 0.54 +1.2
4,696,423 - DDA3937_RS20640 0.54 -0.4
4,696,423 - DDA3937_RS20640 0.54 -0.2
4,696,423 - DDA3937_RS20640 0.54 -1.2
4,696,423 - DDA3937_RS20640 0.54 -0.1
4,696,423 - DDA3937_RS20640 0.54 -1.8
4,696,423 - DDA3937_RS20640 0.54 -1.8
4,696,583 - DDA3937_RS20640 0.72 -0.4
4,696,583 - -0.4
4,696,594 + DDA3937_RS20640 0.73 -1.2
4,696,595 - DDA3937_RS20640 0.73 -0.1
4,696,595 - DDA3937_RS20640 0.73 -1.4
4,696,837 + -0.4
4,696,933 - -0.1
4,696,934 + -0.6
4,696,934 + +0.9
4,696,934 + +0.2
4,696,934 + +0.9
4,696,934 + -0.5
4,696,934 + -0.6
4,696,934 + -1.4
4,696,934 + +3.8
4,696,935 - -0.2
4,696,935 - -0.2
4,696,935 - +0.5
4,696,935 - -2.1
4,696,935 - +1.2
4,696,935 - -0.2
4,696,939 - -0.4
4,696,953 + +0.8
4,696,960 + -0.4
4,696,960 + -0.1
4,696,960 + -1.2
4,696,960 + -0.1
4,696,960 + +1.7
4,696,960 + -1.4
4,696,961 - +0.8
4,696,961 - -1.6
4,696,961 - +1.2
4,696,961 - +2.3
4,696,961 - +0.6
4,696,961 - +0.1
4,696,961 - -1.5
4,696,961 - +0.4
4,696,978 - +0.0
4,696,990 + -0.9
4,697,060 - DDA3937_RS20645 0.11 +0.6
4,697,071 + DDA3937_RS20645 0.12 +0.0
4,697,071 + DDA3937_RS20645 0.12 +0.6
4,697,071 + -0.6
4,697,071 + DDA3937_RS20645 0.12 -1.9
4,697,071 + DDA3937_RS20645 0.12 -0.1
4,697,071 + DDA3937_RS20645 0.12 -0.4
4,697,071 + DDA3937_RS20645 0.12 -0.0
4,697,071 + DDA3937_RS20645 0.12 -1.7
4,697,071 + DDA3937_RS20645 0.12 +0.2
4,697,072 - DDA3937_RS20645 0.12 -0.9
4,697,072 - DDA3937_RS20645 0.12 -0.1
4,697,072 - DDA3937_RS20645 0.12 +2.3
4,697,072 - DDA3937_RS20645 0.12 +1.6
4,697,072 - DDA3937_RS20645 0.12 -1.8
4,697,072 - DDA3937_RS20645 0.12 +1.0
4,697,072 - DDA3937_RS20645 0.12 -2.2
4,697,103 - DDA3937_RS20645 0.16 -0.1
4,697,103 - DDA3937_RS20645 0.16 -0.5
4,697,391 + DDA3937_RS20645 0.49 +2.4
4,697,391 + +0.9
4,697,392 - DDA3937_RS20645 0.49 +0.2
4,697,392 - DDA3937_RS20645 0.49 +1.1
4,697,392 - DDA3937_RS20645 0.49 -1.2
4,697,392 - DDA3937_RS20645 0.49 -1.1
4,697,392 - DDA3937_RS20645 0.49 -1.6
4,697,392 - DDA3937_RS20645 0.49 -0.1
4,697,586 - DDA3937_RS20645 0.71 +1.1
4,697,653 + DDA3937_RS20645 0.79 -0.9
4,697,700 + DDA3937_RS20645 0.85 +0.4
4,697,700 + DDA3937_RS20645 0.85 -0.6
4,697,701 - DDA3937_RS20645 0.85 +2.2

Or see this region's nucleotide sequence