Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS20570

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
4,678,826	-		DDA3937_RS20565	0.76	-1.9
4,679,024	+		DDA3937_RS20565	0.86	+2.8
4,679,024	+		DDA3937_RS20565	0.86	-1.2
4,679,024	+		DDA3937_RS20565	0.86	+0.1
4,679,024	+		DDA3937_RS20565	0.86	-0.6
4,679,024	+		DDA3937_RS20565	0.86	+1.0
4,679,024	+		DDA3937_RS20565	0.86	+0.9
4,679,025	-		DDA3937_RS20565	0.86	-1.0
4,679,025	-		DDA3937_RS20565	0.86	-2.4
4,679,025	-		DDA3937_RS20565	0.86	+0.9
4,679,087	+		DDA3937_RS20565	0.89	+0.1
4,679,087	+		DDA3937_RS20565	0.89	+1.5
4,679,087	+		DDA3937_RS20565	0.89	+1.0
4,679,087	+		DDA3937_RS20565	0.89	+0.7
4,679,087	+		DDA3937_RS20565	0.89	+0.1
4,679,088	-		DDA3937_RS20565	0.89	+1.3
4,679,088	-		DDA3937_RS20565	0.89	+1.1
4,679,088	-		DDA3937_RS20565	0.89	+1.1
4,679,138	+				+0.2
4,679,278	+				-0.1
4,679,285	+				+0.0
4,679,285	+				-1.8
4,679,293	-				-0.0
4,679,302	+				-1.1
4,679,302	+				+0.7
4,679,309	+				+0.7
4,679,319	+				+2.5
4,679,319	+				+0.5
4,679,319	+				+0.0
4,679,319	+				-0.5
4,679,319	+				+0.8
4,679,319	+				+1.0
4,679,319	+				+1.7
4,679,319	+				-0.2
4,679,319	+				-0.6
4,679,320	-				+0.1
4,679,320	-				+0.1
4,679,320	-				-0.6
4,679,320	-				-1.2
4,679,320	-				+2.6
4,679,320	-				-0.4
4,679,320	-				-0.6
4,679,320	-				+0.9
4,679,322	+				+1.1
4,679,322	+				+0.6
4,679,322	+				+0.8
4,679,323	-				-1.4
4,679,323	-				-0.8
4,679,323	-				-0.7
4,679,379	+				+1.3
4,679,379	+				-2.2
4,679,379	+				+0.5
4,679,379	+				+0.6
4,679,380	-				-0.1
4,679,380	-				-1.2
4,679,380	-				-1.9
4,679,404	+				-1.7
4,679,404	+				-2.7
4,679,405	-				+0.9
4,679,407	+				+0.3
4,679,421	-				+0.3
4,679,461	-				-0.7
4,679,461	-				-0.1
4,679,486	+				+0.4
4,679,487	-				-0.1
4,679,495	+				+0.2
4,679,496	-				-0.4
4,679,496	-				-0.5
4,679,496	-				+0.3
4,679,581	+				-0.9
4,679,581	+				-0.5
4,679,582	-				+0.3
4,679,582	-				-2.1
4,679,582	-				-0.1
4,679,632	+		DDA3937_RS20570	0.10	+1.2
4,679,632	+		DDA3937_RS20570	0.10	-1.8
4,679,632	+		DDA3937_RS20570	0.10	+0.9
4,679,632	+		DDA3937_RS20570	0.10	-0.5
4,679,633	-		DDA3937_RS20570	0.10	-1.3
4,679,633	-		DDA3937_RS20570	0.10	+1.8
4,679,633	-		DDA3937_RS20570	0.10	+0.0
4,679,633	-		DDA3937_RS20570	0.10	-0.4
4,679,633	-		DDA3937_RS20570	0.10	-1.5
4,679,888	+		DDA3937_RS20570	0.27	+0.3
4,679,889	-				-0.4
4,680,094	+		DDA3937_RS20570	0.40	-0.1
4,680,095	-		DDA3937_RS20570	0.40	+0.5
4,680,103	+		DDA3937_RS20570	0.40	-0.9
4,680,103	+		DDA3937_RS20570	0.40	+0.8
4,680,104	-		DDA3937_RS20570	0.41	-1.2
4,680,104	-		DDA3937_RS20570	0.41	-0.9
4,680,104	-		DDA3937_RS20570	0.41	+0.2
4,680,104	-		DDA3937_RS20570	0.41	-1.8
4,680,145	+		DDA3937_RS20570	0.43	-1.8
4,680,146	-		DDA3937_RS20570	0.43	+0.7
4,680,146	-		DDA3937_RS20570	0.43	-1.7
4,680,205	-		DDA3937_RS20570	0.47	+0.1
4,680,208	+		DDA3937_RS20570	0.47	-1.2
4,680,209	-		DDA3937_RS20570	0.47	-0.6
4,680,209	-		DDA3937_RS20570	0.47	-0.7
4,680,283	+		DDA3937_RS20570	0.52	-0.1
4,680,283	+		DDA3937_RS20570	0.52	-1.7
4,680,283	+		DDA3937_RS20570	0.52	-0.4
4,680,283	+		DDA3937_RS20570	0.52	-1.5
4,680,283	+		DDA3937_RS20570	0.52	+1.2
4,680,283	+		DDA3937_RS20570	0.52	-0.1
4,680,284	-		DDA3937_RS20570	0.52	+0.3
4,680,284	-		DDA3937_RS20570	0.52	-0.4
4,680,284	-		DDA3937_RS20570	0.52	-1.8
4,680,284	-		DDA3937_RS20570	0.52	-2.2
4,680,284	-		DDA3937_RS20570	0.52	-1.0
4,680,284	-		DDA3937_RS20570	0.52	+0.7
4,680,292	+		DDA3937_RS20570	0.53	-0.6
4,680,292	+		DDA3937_RS20570	0.53	-1.7
4,680,292	+		DDA3937_RS20570	0.53	-0.5
4,680,293	-		DDA3937_RS20570	0.53	-0.6
4,680,293	-		DDA3937_RS20570	0.53	+0.0
4,680,293	-		DDA3937_RS20570	0.53	-1.1
4,680,293	-		DDA3937_RS20570	0.53	+0.1
4,680,293	-		DDA3937_RS20570	0.53	+0.5
4,680,293	-		DDA3937_RS20570	0.53	+1.7
4,680,293	-		DDA3937_RS20570	0.53	-0.4
4,680,338	+		DDA3937_RS20570	0.56	-0.2
4,680,338	+		DDA3937_RS20570	0.56	-1.5
4,680,338	+		DDA3937_RS20570	0.56	+0.1
4,680,355	+		DDA3937_RS20570	0.57	-0.6
4,680,355	+		DDA3937_RS20570	0.57	-0.1
4,680,355	+		DDA3937_RS20570	0.57	-1.4
4,680,355	+		DDA3937_RS20570	0.57	+0.2
4,680,356	-		DDA3937_RS20570	0.57	-0.2
4,680,356	-		DDA3937_RS20570	0.57	+1.9
4,680,356	-		DDA3937_RS20570	0.57	+0.6
4,680,356	-		DDA3937_RS20570	0.57	-0.6
4,680,356	-		DDA3937_RS20570	0.57	-0.7
4,680,356	-		DDA3937_RS20570	0.57	-1.2
4,680,469	+		DDA3937_RS20570	0.64	-0.3
4,680,469	+		DDA3937_RS20570	0.64	+0.2
4,680,469	+		DDA3937_RS20570	0.64	+0.7
4,680,470	-		DDA3937_RS20570	0.64	-0.9
4,680,470	-		DDA3937_RS20570	0.64	+0.6
4,680,475	+		DDA3937_RS20570	0.64	-0.6
4,680,475	+				+1.9
4,680,476	-		DDA3937_RS20570	0.64	-2.6
4,680,476	-		DDA3937_RS20570	0.64	-1.1
4,680,703	+		DDA3937_RS20570	0.79	-1.8
4,680,703	+		DDA3937_RS20570	0.79	+0.5
4,680,703	+		DDA3937_RS20570	0.79	-2.7
4,680,703	+		DDA3937_RS20570	0.79	+1.5
4,680,703	+		DDA3937_RS20570	0.79	+0.3
4,680,704	-		DDA3937_RS20570	0.79	-1.2
4,680,707	-		DDA3937_RS20570	0.79	-1.2
4,680,790	+		DDA3937_RS20570	0.85	-0.9
4,680,790	+		DDA3937_RS20570	0.85	-2.0
4,680,791	-		DDA3937_RS20570	0.85	-0.9
4,680,791	-		DDA3937_RS20570	0.85	+0.5
4,680,791	-		DDA3937_RS20570	0.85	-1.0
4,680,791	-		DDA3937_RS20570	0.85	+0.7
4,680,802	+		DDA3937_RS20570	0.85	-0.6
4,680,802	+		DDA3937_RS20570	0.85	-1.9
4,680,805	+		DDA3937_RS20570	0.86	-0.9
4,680,805	+		DDA3937_RS20570	0.86	-2.7
4,680,805	+		DDA3937_RS20570	0.86	+1.1
4,680,805	+		DDA3937_RS20570	0.86	-1.0
4,680,806	-		DDA3937_RS20570	0.86	+1.3
4,680,806	-		DDA3937_RS20570	0.86	-1.7
4,680,806	-		DDA3937_RS20570	0.86	-0.7
4,680,806	-		DDA3937_RS20570	0.86	-0.0
4,680,924	-				+1.0
4,680,924	-				-0.1
4,680,924	-				-0.1
4,680,924	-				+0.8
4,680,979	+				-2.1
4,680,980	-				+1.6
4,681,027	+				+0.9
4,681,028	-				-0.4
4,681,056	+				+1.7
4,681,056	+				-0.9
4,681,056	+				-2.7
4,681,056	+				-1.4
4,681,056	+				+1.8
4,681,056	+				+1.1
4,681,056	+				-0.1
4,681,056	+				-2.0
4,681,056	+				+0.5
4,681,057	-				-1.0
4,681,057	-				+0.4
4,681,057	-				-1.4
4,681,057	-				+0.1
4,681,057	-				-0.4
4,681,057	-				+0.9
4,681,057	-				+0.4
4,681,057	-				+1.0
4,681,057	-				-0.6
4,681,057	-				-0.3
4,681,057	-				+1.3
4,681,057	-				+0.4
4,681,057	-				-0.0
4,681,057	-				-1.3
4,681,057	-				-0.4
4,681,057	-				-0.2
4,681,057	-				-0.4
4,681,059	-				-1.8
4,681,059	-				-0.0
4,681,125	-				-0.2
4,681,240	-		DDA3937_RS20575	0.21	+0.2
4,681,287	+		DDA3937_RS20575	0.26	+0.3
4,681,287	+		DDA3937_RS20575	0.26	-1.6
4,681,421	+		DDA3937_RS20575	0.41	-0.3
4,681,565	+		DDA3937_RS20575	0.56	+0.8
4,681,565	+		DDA3937_RS20575	0.56	-1.1
4,681,565	+		DDA3937_RS20575	0.56	+1.3
4,681,565	+		DDA3937_RS20575	0.56	-3.2
4,681,565	+		DDA3937_RS20575	0.56	-2.5
4,681,566	-		DDA3937_RS20575	0.56	-1.3
4,681,656	+		DDA3937_RS20575	0.66	-1.1
4,681,656	+		DDA3937_RS20575	0.66	+0.9
4,681,656	+		DDA3937_RS20575	0.66	+1.2
4,681,656	+		DDA3937_RS20575	0.66	-0.9
4,681,657	-		DDA3937_RS20575	0.66	-1.4
4,681,902	-				-0.9
4,681,911	-				+0.2
4,681,932	+				-1.5
4,681,933	-				-2.2
4,681,966	-				+0.3