Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS19045

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
4,354,344	+		DDA3937_RS19040	0.78	-0.1
4,354,344	+		DDA3937_RS19040	0.78	+1.2
4,354,344	+				-0.1
4,354,344	+		DDA3937_RS19040	0.78	+1.5
4,354,345	-		DDA3937_RS19040	0.78	-0.4
4,354,345	-		DDA3937_RS19040	0.78	-0.7
4,354,345	-		DDA3937_RS19040	0.78	-0.1
4,354,345	-		DDA3937_RS19040	0.78	+3.9
4,354,345	-		DDA3937_RS19040	0.78	+0.4
4,354,345	-		DDA3937_RS19040	0.78	-0.0
4,354,345	-		DDA3937_RS19040	0.78	-0.5
4,354,345	-		DDA3937_RS19040	0.78	-0.1
4,354,377	+		DDA3937_RS19040	0.79	+0.3
4,354,378	-		DDA3937_RS19040	0.79	-0.4
4,354,378	-		DDA3937_RS19040	0.79	-0.7
4,354,378	-				-0.1
4,354,450	+		DDA3937_RS19040	0.81	-0.9
4,354,452	+				+0.9
4,354,453	-		DDA3937_RS19040	0.81	+0.3
4,354,453	-		DDA3937_RS19040	0.81	+0.9
4,354,619	-		DDA3937_RS19040	0.86	-0.7
4,354,684	+		DDA3937_RS19040	0.87	+1.4
4,354,684	+		DDA3937_RS19040	0.87	-1.1
4,354,685	-		DDA3937_RS19040	0.87	-0.3
4,354,685	-		DDA3937_RS19040	0.87	-1.1
4,354,685	-		DDA3937_RS19040	0.87	-2.5
4,354,685	-				+0.9
4,354,685	-		DDA3937_RS19040	0.87	+0.5
4,354,764	+		DDA3937_RS19040	0.90	-0.1
4,354,935	+				-0.0
4,354,935	+				-0.7
4,354,935	+				+1.9
4,354,936	-				+1.7
4,354,936	-				+0.2
4,354,936	-				-0.5
4,354,936	-				-1.3
4,354,936	-				-0.5
4,354,936	-				-0.2
4,354,942	+				-2.2
4,354,943	-				+0.0
4,354,943	-				-0.3
4,354,943	-				+1.3
4,354,970	-				-0.2
4,354,970	-				-0.6
4,354,990	+				-1.5
4,354,991	-				-0.6
4,354,991	-				-0.7
4,355,058	+				+0.5
4,355,059	-				-0.7
4,355,098	+				-2.7
4,355,098	+				-1.4
4,355,099	-				-0.3
4,355,123	+				-1.7
4,355,123	+				-0.7
4,355,124	-				-1.4
4,355,124	-				-0.9
4,355,124	-				-0.9
4,355,124	-				+2.7
4,355,132	+				-0.2
4,355,153	-				-0.5
4,355,153	-				+0.3
4,355,153	-				-0.1
4,355,187	-				-1.6
4,355,221	-				+0.2
4,355,231	+				-2.3
4,355,232	-				-0.3
4,355,265	+				+0.6
4,355,291	+				+0.5
4,355,292	-				-0.1
4,355,292	-				+0.4
4,355,390	+				-0.3
4,355,390	+				-1.9
4,355,391	-				-1.7
4,355,391	-				-0.2
4,355,391	-				-1.0
4,355,425	+		DDA3937_RS19045	0.14	-1.1
4,355,426	-		DDA3937_RS19045	0.14	-0.9
4,355,514	+		DDA3937_RS19045	0.24	-0.4
4,355,514	+		DDA3937_RS19045	0.24	-1.4
4,355,514	+		DDA3937_RS19045	0.24	-2.3
4,355,587	-		DDA3937_RS19045	0.33	-0.3
4,355,617	-		DDA3937_RS19045	0.37	-0.9
4,355,617	-		DDA3937_RS19045	0.37	+0.1
4,355,617	-		DDA3937_RS19045	0.37	+0.3
4,355,708	-		DDA3937_RS19045	0.48	+0.0
4,355,718	+		DDA3937_RS19045	0.49	-0.8
4,355,718	+		DDA3937_RS19045	0.49	-1.5
4,355,718	+		DDA3937_RS19045	0.49	-2.5
4,355,719	-		DDA3937_RS19045	0.49	-0.1
4,355,719	-		DDA3937_RS19045	0.49	-0.5
4,355,875	+		DDA3937_RS19045	0.68	-0.5
4,355,875	+		DDA3937_RS19045	0.68	-0.7
4,355,875	+		DDA3937_RS19045	0.68	+0.2
4,355,875	+		DDA3937_RS19045	0.68	-2.3
4,355,875	+		DDA3937_RS19045	0.68	-0.8
4,355,875	+		DDA3937_RS19045	0.68	-0.6
4,355,876	-		DDA3937_RS19045	0.68	+0.2
4,355,876	-		DDA3937_RS19045	0.68	-1.0
4,355,876	-		DDA3937_RS19045	0.68	-0.8
4,355,876	-		DDA3937_RS19045	0.68	-1.5
4,355,876	-		DDA3937_RS19045	0.68	+0.3
4,355,877	+		DDA3937_RS19045	0.68	+1.4
4,355,877	+		DDA3937_RS19045	0.68	-0.6
4,355,877	+		DDA3937_RS19045	0.68	+0.3
4,355,877	+		DDA3937_RS19045	0.68	-0.1
4,355,878	-		DDA3937_RS19045	0.68	-0.1
4,356,114	+				-0.5
4,356,114	+				-0.1
4,356,114	+				-0.7
4,356,115	-				-0.3
4,356,115	-				-0.9
4,356,115	-				-1.1
4,356,115	-				-0.9
4,356,115	-				-1.4
4,356,118	+				-0.5
4,356,118	+				-1.8
4,356,118	+				-1.4
4,356,118	+				+1.7
4,356,119	-				+1.9
4,356,191	+				-1.0
4,356,196	+				-0.0
4,356,196	+				+0.2
4,356,196	+				-0.5
4,356,196	+				-1.6
4,356,196	+				+1.5
4,356,197	-				-0.3
4,356,197	-				-1.0
4,356,197	-				-1.3
4,356,197	-				-1.9
4,356,197	-				+2.3
4,356,197	-				-0.7
4,356,197	-				-0.9
4,356,197	-				+0.7
4,356,197	-				+0.6
4,356,221	+				+0.0
4,356,390	+		DDA3937_RS19050	0.14	-0.8
4,356,392	+		DDA3937_RS19050	0.14	-0.0
4,356,393	-		DDA3937_RS19050	0.14	+0.5
4,356,467	+		DDA3937_RS19050	0.18	-0.7
4,356,467	+		DDA3937_RS19050	0.18	-1.1
4,356,468	-		DDA3937_RS19050	0.18	+0.3
4,356,468	-		DDA3937_RS19050	0.18	+3.2
4,356,482	+		DDA3937_RS19050	0.19	-1.0
4,356,483	-		DDA3937_RS19050	0.19	-0.5
4,356,483	-		DDA3937_RS19050	0.19	-0.6
4,356,497	-		DDA3937_RS19050	0.20	+0.4
4,356,537	+		DDA3937_RS19050	0.22	+0.8
4,356,538	-		DDA3937_RS19050	0.22	-0.1
4,356,552	+		DDA3937_RS19050	0.23	-0.5
4,356,553	-		DDA3937_RS19050	0.23	-0.2
4,356,588	-		DDA3937_RS19050	0.25	-2.2
4,356,635	+		DDA3937_RS19050	0.28	-0.2
4,356,635	+		DDA3937_RS19050	0.28	-1.5
4,356,636	-		DDA3937_RS19050	0.28	+2.4
4,356,636	-				+3.4
4,356,668	+		DDA3937_RS19050	0.29	-0.7
4,356,668	+		DDA3937_RS19050	0.29	+1.9
4,356,668	+		DDA3937_RS19050	0.29	+0.4
4,356,669	-		DDA3937_RS19050	0.29	+0.3
4,356,669	-		DDA3937_RS19050	0.29	-0.9
4,356,730	+		DDA3937_RS19050	0.33	-1.0
4,356,730	+		DDA3937_RS19050	0.33	-0.3
4,356,731	-		DDA3937_RS19050	0.33	-1.5
4,356,785	+		DDA3937_RS19050	0.36	-2.3
4,356,786	-		DDA3937_RS19050	0.36	-0.4
4,356,786	-		DDA3937_RS19050	0.36	+0.9
4,356,786	-		DDA3937_RS19050	0.36	+1.4
4,356,840	-		DDA3937_RS19050	0.39	-1.7
4,356,973	-		DDA3937_RS19050	0.47	+0.0
4,356,987	+		DDA3937_RS19050	0.48	+0.4
4,356,987	+		DDA3937_RS19050	0.48	-1.1
4,356,988	-		DDA3937_RS19050	0.48	+0.1
4,357,020	-		DDA3937_RS19050	0.49	-0.1
4,357,020	-		DDA3937_RS19050	0.49	-2.4
4,357,131	-		DDA3937_RS19050	0.56	+0.4
4,357,131	-		DDA3937_RS19050	0.56	-2.9