Experiment: Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS18695 and DDA3937_RS18700 are separated by 128 nucleotides DDA3937_RS18700 and DDA3937_RS18705 are separated by 87 nucleotides DDA3937_RS18705 and DDA3937_RS18710 are separated by 303 nucleotides DDA3937_RS18710 and DDA3937_RS18715 overlap by 23 nucleotides
DDA3937_RS18695: DDA3937_RS18695 - D-2-hydroxyacid dehydrogenase, at 4,273,022 to 4,273,948
_RS18695
DDA3937_RS18700: DDA3937_RS18700 - tRNA-Gly, at 4,274,077 to 4,274,152
_RS18700
DDA3937_RS18705: DDA3937_RS18705 - hypothetical protein, at 4,274,240 to 4,274,542
_RS18705
DDA3937_RS18710: DDA3937_RS18710 - hypothetical protein, at 4,274,846 to 4,275,520
_RS18710
DDA3937_RS18715: DDA3937_RS18715 - LLM class flavin-dependent oxidoreductase, at 4,275,498 to 4,276,499
_RS18715
Position (kb) 4274
4275 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4273.294 kb on + strand, within DDA3937_RS18695 at 4273.294 kb on + strand, within DDA3937_RS18695 at 4273.295 kb on - strand, within DDA3937_RS18695 at 4273.338 kb on + strand at 4273.338 kb on + strand, within DDA3937_RS18695 at 4273.338 kb on + strand, within DDA3937_RS18695 at 4273.338 kb on + strand, within DDA3937_RS18695 at 4273.339 kb on - strand, within DDA3937_RS18695 at 4273.339 kb on - strand, within DDA3937_RS18695 at 4273.342 kb on + strand, within DDA3937_RS18695 at 4273.352 kb on - strand, within DDA3937_RS18695 at 4273.352 kb on - strand, within DDA3937_RS18695 at 4273.352 kb on - strand, within DDA3937_RS18695 at 4273.352 kb on - strand, within DDA3937_RS18695 at 4273.383 kb on + strand, within DDA3937_RS18695 at 4273.384 kb on - strand, within DDA3937_RS18695 at 4273.384 kb on - strand, within DDA3937_RS18695 at 4273.384 kb on - strand, within DDA3937_RS18695 at 4273.408 kb on + strand, within DDA3937_RS18695 at 4273.427 kb on + strand, within DDA3937_RS18695 at 4273.427 kb on + strand, within DDA3937_RS18695 at 4273.428 kb on - strand, within DDA3937_RS18695 at 4273.461 kb on + strand, within DDA3937_RS18695 at 4273.462 kb on - strand, within DDA3937_RS18695 at 4273.462 kb on - strand, within DDA3937_RS18695 at 4273.574 kb on + strand, within DDA3937_RS18695 at 4273.574 kb on + strand, within DDA3937_RS18695 at 4273.574 kb on + strand, within DDA3937_RS18695 at 4273.644 kb on + strand, within DDA3937_RS18695 at 4273.644 kb on + strand, within DDA3937_RS18695 at 4273.656 kb on + strand, within DDA3937_RS18695 at 4273.666 kb on + strand, within DDA3937_RS18695 at 4273.761 kb on - strand, within DDA3937_RS18695 at 4273.874 kb on + strand at 4273.874 kb on + strand at 4273.875 kb on - strand at 4273.934 kb on + strand at 4273.934 kb on + strand at 4273.939 kb on + strand at 4273.939 kb on + strand at 4273.939 kb on + strand at 4273.939 kb on + strand at 4273.939 kb on + strand at 4273.939 kb on + strand at 4273.939 kb on + strand at 4273.940 kb on - strand at 4273.940 kb on - strand at 4273.940 kb on - strand at 4273.940 kb on - strand at 4273.940 kb on - strand at 4273.940 kb on - strand at 4273.940 kb on - strand at 4273.940 kb on - strand at 4273.940 kb on - strand at 4273.940 kb on - strand at 4273.940 kb on - strand at 4273.940 kb on - strand at 4273.940 kb on - strand at 4273.940 kb on - strand at 4273.940 kb on - strand at 4273.940 kb on - strand at 4273.981 kb on + strand at 4273.982 kb on - strand at 4273.984 kb on + strand at 4273.984 kb on + strand at 4273.984 kb on + strand at 4273.984 kb on + strand at 4273.984 kb on + strand at 4273.984 kb on + strand at 4273.985 kb on - strand at 4273.985 kb on - strand at 4273.985 kb on - strand at 4273.985 kb on - strand at 4273.985 kb on - strand at 4273.985 kb on - strand at 4273.985 kb on - strand at 4273.985 kb on - strand at 4273.985 kb on - strand at 4273.986 kb on + strand at 4273.986 kb on + strand at 4273.986 kb on + strand at 4273.986 kb on + strand at 4273.987 kb on - strand at 4274.009 kb on + strand at 4274.009 kb on + strand at 4274.010 kb on - strand at 4274.010 kb on - strand at 4274.015 kb on + strand at 4274.020 kb on + strand at 4274.020 kb on + strand at 4274.020 kb on + strand at 4274.021 kb on - strand at 4274.060 kb on - strand at 4274.060 kb on - strand at 4274.309 kb on + strand, within DDA3937_RS18705 at 4274.309 kb on + strand, within DDA3937_RS18705 at 4274.310 kb on - strand, within DDA3937_RS18705 at 4274.311 kb on + strand, within DDA3937_RS18705 at 4274.312 kb on - strand, within DDA3937_RS18705 at 4274.312 kb on - strand, within DDA3937_RS18705 at 4274.333 kb on + strand, within DDA3937_RS18705 at 4274.333 kb on + strand, within DDA3937_RS18705 at 4274.333 kb on + strand, within DDA3937_RS18705 at 4274.333 kb on + strand, within DDA3937_RS18705 at 4274.333 kb on + strand, within DDA3937_RS18705 at 4274.333 kb on + strand at 4274.334 kb on - strand, within DDA3937_RS18705 at 4274.354 kb on + strand, within DDA3937_RS18705 at 4274.354 kb on + strand, within DDA3937_RS18705 at 4274.354 kb on + strand, within DDA3937_RS18705 at 4274.355 kb on - strand, within DDA3937_RS18705 at 4274.377 kb on + strand, within DDA3937_RS18705 at 4274.377 kb on + strand, within DDA3937_RS18705 at 4274.378 kb on - strand, within DDA3937_RS18705 at 4274.453 kb on + strand, within DDA3937_RS18705 at 4274.454 kb on - strand, within DDA3937_RS18705 at 4274.454 kb on - strand, within DDA3937_RS18705 at 4274.495 kb on + strand, within DDA3937_RS18705 at 4274.495 kb on + strand, within DDA3937_RS18705 at 4274.495 kb on + strand, within DDA3937_RS18705 at 4274.496 kb on - strand, within DDA3937_RS18705 at 4274.526 kb on - strand at 4274.540 kb on + strand at 4274.540 kb on + strand at 4274.541 kb on - strand at 4274.541 kb on - strand at 4274.560 kb on + strand at 4274.577 kb on + strand at 4274.580 kb on + strand at 4274.580 kb on + strand at 4274.581 kb on - strand at 4274.619 kb on + strand at 4274.620 kb on - strand at 4274.623 kb on + strand at 4274.623 kb on + strand at 4274.624 kb on - strand at 4274.624 kb on - strand at 4274.633 kb on + strand at 4274.633 kb on + strand at 4274.633 kb on + strand at 4274.634 kb on - strand at 4274.638 kb on - strand at 4274.640 kb on - strand at 4274.707 kb on + strand at 4274.707 kb on + strand at 4274.707 kb on + strand at 4274.707 kb on + strand at 4274.708 kb on - strand at 4274.748 kb on + strand at 4274.780 kb on - strand at 4274.794 kb on + strand at 4274.854 kb on + strand at 4274.892 kb on + strand at 4274.892 kb on + strand at 4274.892 kb on + strand at 4274.892 kb on + strand at 4274.892 kb on + strand at 4274.892 kb on + strand at 4274.892 kb on + strand at 4274.892 kb on + strand at 4274.893 kb on - strand at 4274.893 kb on - strand at 4274.893 kb on - strand at 4274.893 kb on - strand at 4274.949 kb on + strand, within DDA3937_RS18710 at 4274.950 kb on - strand, within DDA3937_RS18710 at 4274.991 kb on + strand, within DDA3937_RS18710 at 4275.001 kb on + strand, within DDA3937_RS18710 at 4275.001 kb on + strand, within DDA3937_RS18710 at 4275.001 kb on + strand, within DDA3937_RS18710 at 4275.001 kb on + strand, within DDA3937_RS18710 at 4275.001 kb on + strand, within DDA3937_RS18710 at 4275.001 kb on + strand, within DDA3937_RS18710 at 4275.001 kb on + strand, within DDA3937_RS18710 at 4275.001 kb on + strand, within DDA3937_RS18710 at 4275.001 kb on + strand, within DDA3937_RS18710 at 4275.001 kb on + strand, within DDA3937_RS18710 at 4275.001 kb on + strand, within DDA3937_RS18710 at 4275.001 kb on + strand, within DDA3937_RS18710 at 4275.001 kb on + strand, within DDA3937_RS18710 at 4275.001 kb on + strand, within DDA3937_RS18710 at 4275.001 kb on + strand, within DDA3937_RS18710 at 4275.002 kb on - strand, within DDA3937_RS18710 at 4275.002 kb on - strand, within DDA3937_RS18710 at 4275.002 kb on - strand, within DDA3937_RS18710 at 4275.002 kb on - strand, within DDA3937_RS18710 at 4275.002 kb on - strand, within DDA3937_RS18710 at 4275.002 kb on - strand, within DDA3937_RS18710 at 4275.002 kb on - strand, within DDA3937_RS18710 at 4275.002 kb on - strand, within DDA3937_RS18710 at 4275.002 kb on - strand, within DDA3937_RS18710 at 4275.002 kb on - strand, within DDA3937_RS18710 at 4275.005 kb on + strand, within DDA3937_RS18710 at 4275.006 kb on - strand, within DDA3937_RS18710 at 4275.122 kb on + strand at 4275.122 kb on + strand, within DDA3937_RS18710 at 4275.123 kb on - strand, within DDA3937_RS18710 at 4275.123 kb on - strand, within DDA3937_RS18710 at 4275.123 kb on - strand, within DDA3937_RS18710 at 4275.123 kb on - strand, within DDA3937_RS18710 at 4275.123 kb on - strand, within DDA3937_RS18710 at 4275.123 kb on - strand, within DDA3937_RS18710 at 4275.132 kb on + strand, within DDA3937_RS18710 at 4275.132 kb on + strand, within DDA3937_RS18710 at 4275.133 kb on - strand, within DDA3937_RS18710 at 4275.133 kb on - strand, within DDA3937_RS18710 at 4275.133 kb on - strand, within DDA3937_RS18710 at 4275.146 kb on + strand, within DDA3937_RS18710 at 4275.146 kb on + strand at 4275.147 kb on - strand, within DDA3937_RS18710 at 4275.167 kb on - strand, within DDA3937_RS18710 at 4275.203 kb on + strand, within DDA3937_RS18710 at 4275.203 kb on + strand, within DDA3937_RS18710 at 4275.257 kb on + strand, within DDA3937_RS18710 at 4275.257 kb on + strand, within DDA3937_RS18710 at 4275.280 kb on - strand, within DDA3937_RS18710 at 4275.518 kb on + strand at 4275.518 kb on + strand at 4275.519 kb on - strand at 4275.519 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Atlantic remove 4,273,294 + DDA3937_RS18695 0.29 +1.2 4,273,294 + DDA3937_RS18695 0.29 +1.1 4,273,295 - DDA3937_RS18695 0.29 -2.3 4,273,338 + -0.2 4,273,338 + DDA3937_RS18695 0.34 +1.1 4,273,338 + DDA3937_RS18695 0.34 -0.9 4,273,338 + DDA3937_RS18695 0.34 +0.2 4,273,339 - DDA3937_RS18695 0.34 +0.1 4,273,339 - DDA3937_RS18695 0.34 -1.0 4,273,342 + DDA3937_RS18695 0.35 +0.7 4,273,352 - DDA3937_RS18695 0.36 -0.7 4,273,352 - DDA3937_RS18695 0.36 +0.2 4,273,352 - DDA3937_RS18695 0.36 -0.2 4,273,352 - DDA3937_RS18695 0.36 -2.2 4,273,383 + DDA3937_RS18695 0.39 -0.6 4,273,384 - DDA3937_RS18695 0.39 -0.6 4,273,384 - DDA3937_RS18695 0.39 -1.7 4,273,384 - DDA3937_RS18695 0.39 +1.5 4,273,408 + DDA3937_RS18695 0.42 -0.1 4,273,427 + DDA3937_RS18695 0.44 -2.1 4,273,427 + DDA3937_RS18695 0.44 -2.5 4,273,428 - DDA3937_RS18695 0.44 -0.7 4,273,461 + DDA3937_RS18695 0.47 -1.2 4,273,462 - DDA3937_RS18695 0.47 -0.5 4,273,462 - DDA3937_RS18695 0.47 -1.5 4,273,574 + DDA3937_RS18695 0.60 +0.9 4,273,574 + DDA3937_RS18695 0.60 -0.0 4,273,574 + DDA3937_RS18695 0.60 +0.3 4,273,644 + DDA3937_RS18695 0.67 +0.4 4,273,644 + DDA3937_RS18695 0.67 -0.2 4,273,656 + DDA3937_RS18695 0.68 -0.4 4,273,666 + DDA3937_RS18695 0.69 -2.5 4,273,761 - DDA3937_RS18695 0.80 -0.4 4,273,874 + -1.0 4,273,874 + -0.3 4,273,875 - -0.5 4,273,934 + -0.4 4,273,934 + -1.0 4,273,939 + +2.8 4,273,939 + -1.0 4,273,939 + -1.0 4,273,939 + +0.4 4,273,939 + -0.5 4,273,939 + -1.6 4,273,939 + +0.5 4,273,940 - -0.9 4,273,940 - -1.0 4,273,940 - -0.4 4,273,940 - -1.9 4,273,940 - -0.9 4,273,940 - +0.3 4,273,940 - +0.3 4,273,940 - -2.2 4,273,940 - -1.2 4,273,940 - -3.7 4,273,940 - +1.6 4,273,940 - +0.1 4,273,940 - +1.1 4,273,940 - +0.1 4,273,940 - -1.0 4,273,940 - -1.7 4,273,981 + -0.5 4,273,982 - -1.0 4,273,984 + -1.2 4,273,984 + -0.6 4,273,984 + +0.4 4,273,984 + +1.1 4,273,984 + -0.2 4,273,984 + +0.3 4,273,985 - -2.2 4,273,985 - -0.2 4,273,985 - +0.1 4,273,985 - -0.9 4,273,985 - -1.6 4,273,985 - +0.8 4,273,985 - -0.2 4,273,985 - -1.6 4,273,985 - -0.9 4,273,986 + +1.5 4,273,986 + +0.3 4,273,986 + +0.8 4,273,986 + +2.7 4,273,987 - +0.8 4,274,009 + +0.1 4,274,009 + -0.2 4,274,010 - -0.5 4,274,010 - -0.2 4,274,015 + -1.5 4,274,020 + -2.0 4,274,020 + -1.1 4,274,020 + +0.0 4,274,021 - -1.5 4,274,060 - -1.1 4,274,060 - +1.5 4,274,309 + DDA3937_RS18705 0.23 +0.8 4,274,309 + DDA3937_RS18705 0.23 -2.6 4,274,310 - DDA3937_RS18705 0.23 +1.6 4,274,311 + DDA3937_RS18705 0.23 -1.3 4,274,312 - DDA3937_RS18705 0.24 -0.6 4,274,312 - DDA3937_RS18705 0.24 -0.4 4,274,333 + DDA3937_RS18705 0.31 -0.2 4,274,333 + DDA3937_RS18705 0.31 -1.1 4,274,333 + DDA3937_RS18705 0.31 -1.4 4,274,333 + DDA3937_RS18705 0.31 +0.5 4,274,333 + DDA3937_RS18705 0.31 -1.2 4,274,333 + +2.6 4,274,334 - DDA3937_RS18705 0.31 -0.6 4,274,354 + DDA3937_RS18705 0.38 -0.5 4,274,354 + DDA3937_RS18705 0.38 -1.6 4,274,354 + DDA3937_RS18705 0.38 -0.3 4,274,355 - DDA3937_RS18705 0.38 -1.7 4,274,377 + DDA3937_RS18705 0.45 -0.2 4,274,377 + DDA3937_RS18705 0.45 +1.1 4,274,378 - DDA3937_RS18705 0.46 -1.2 4,274,453 + DDA3937_RS18705 0.70 +0.3 4,274,454 - DDA3937_RS18705 0.71 -0.4 4,274,454 - DDA3937_RS18705 0.71 -0.6 4,274,495 + DDA3937_RS18705 0.84 +0.3 4,274,495 + DDA3937_RS18705 0.84 +0.5 4,274,495 + DDA3937_RS18705 0.84 +0.3 4,274,496 - DDA3937_RS18705 0.84 +0.9 4,274,526 - +0.5 4,274,540 + +0.0 4,274,540 + +1.8 4,274,541 - +2.2 4,274,541 - -0.2 4,274,560 + -2.0 4,274,577 + -0.3 4,274,580 + -0.7 4,274,580 + +0.4 4,274,581 - -1.2 4,274,619 + -0.5 4,274,620 - +1.6 4,274,623 + -1.0 4,274,623 + +1.3 4,274,624 - -1.0 4,274,624 - +0.4 4,274,633 + +0.0 4,274,633 + -1.1 4,274,633 + -0.3 4,274,634 - -0.9 4,274,638 - -0.7 4,274,640 - -1.1 4,274,707 + +0.8 4,274,707 + -0.6 4,274,707 + +0.4 4,274,707 + -0.7 4,274,708 - -1.6 4,274,748 + -0.7 4,274,780 - +1.7 4,274,794 + -0.9 4,274,854 + -0.7 4,274,892 + -1.4 4,274,892 + +0.0 4,274,892 + +2.0 4,274,892 + -0.2 4,274,892 + -0.7 4,274,892 + +0.6 4,274,892 + -2.1 4,274,892 + -0.2 4,274,893 - -0.5 4,274,893 - +2.3 4,274,893 - -0.8 4,274,893 - +0.3 4,274,949 + DDA3937_RS18710 0.15 -0.7 4,274,950 - DDA3937_RS18710 0.15 -0.7 4,274,991 + DDA3937_RS18710 0.21 +0.8 4,275,001 + DDA3937_RS18710 0.23 -0.6 4,275,001 + DDA3937_RS18710 0.23 +0.2 4,275,001 + DDA3937_RS18710 0.23 -0.6 4,275,001 + DDA3937_RS18710 0.23 +0.0 4,275,001 + DDA3937_RS18710 0.23 -0.1 4,275,001 + DDA3937_RS18710 0.23 -2.2 4,275,001 + DDA3937_RS18710 0.23 -1.6 4,275,001 + DDA3937_RS18710 0.23 +0.6 4,275,001 + DDA3937_RS18710 0.23 +0.3 4,275,001 + DDA3937_RS18710 0.23 +2.5 4,275,001 + DDA3937_RS18710 0.23 -1.0 4,275,001 + DDA3937_RS18710 0.23 +1.2 4,275,001 + DDA3937_RS18710 0.23 -0.2 4,275,001 + DDA3937_RS18710 0.23 +0.3 4,275,001 + DDA3937_RS18710 0.23 +0.0 4,275,002 - DDA3937_RS18710 0.23 -2.1 4,275,002 - DDA3937_RS18710 0.23 +0.4 4,275,002 - DDA3937_RS18710 0.23 +0.4 4,275,002 - DDA3937_RS18710 0.23 -1.8 4,275,002 - DDA3937_RS18710 0.23 +1.7 4,275,002 - DDA3937_RS18710 0.23 -1.0 4,275,002 - DDA3937_RS18710 0.23 +0.9 4,275,002 - DDA3937_RS18710 0.23 -0.9 4,275,002 - DDA3937_RS18710 0.23 +0.1 4,275,002 - DDA3937_RS18710 0.23 +0.4 4,275,005 + DDA3937_RS18710 0.24 -1.3 4,275,006 - DDA3937_RS18710 0.24 +0.6 4,275,122 + +0.3 4,275,122 + DDA3937_RS18710 0.41 -0.1 4,275,123 - DDA3937_RS18710 0.41 +0.3 4,275,123 - DDA3937_RS18710 0.41 -2.3 4,275,123 - DDA3937_RS18710 0.41 +0.8 4,275,123 - DDA3937_RS18710 0.41 +0.4 4,275,123 - DDA3937_RS18710 0.41 -0.5 4,275,123 - DDA3937_RS18710 0.41 -0.5 4,275,132 + DDA3937_RS18710 0.42 +0.0 4,275,132 + DDA3937_RS18710 0.42 +0.2 4,275,133 - DDA3937_RS18710 0.43 +2.2 4,275,133 - DDA3937_RS18710 0.43 +2.7 4,275,133 - DDA3937_RS18710 0.43 -1.7 4,275,146 + DDA3937_RS18710 0.44 +1.6 4,275,146 + -0.2 4,275,147 - DDA3937_RS18710 0.45 +1.6 4,275,167 - DDA3937_RS18710 0.48 -0.0 4,275,203 + DDA3937_RS18710 0.53 +1.4 4,275,203 + DDA3937_RS18710 0.53 +1.1 4,275,257 + DDA3937_RS18710 0.61 -0.0 4,275,257 + DDA3937_RS18710 0.61 -0.4 4,275,280 - DDA3937_RS18710 0.64 -2.2 4,275,518 + -0.1 4,275,518 + -0.5 4,275,519 - -1.4 4,275,519 - -0.0
Or see this region's nucleotide sequence