Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS17225

Experiment: Atlantic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS17210 and DDA3937_RS17215 are separated by 116 nucleotidesDDA3937_RS17215 and DDA3937_RS17220 are separated by 41 nucleotidesDDA3937_RS17220 and DDA3937_RS17225 are separated by 4 nucleotidesDDA3937_RS17225 and DDA3937_RS17230 are separated by 5 nucleotidesDDA3937_RS17230 and DDA3937_RS17235 are separated by 221 nucleotides DDA3937_RS17210: DDA3937_RS17210 - DUF488 family protein, at 3,922,108 to 3,922,482 _RS17210 DDA3937_RS17215: DDA3937_RS17215 - 50S ribosomal protein L9, at 3,922,599 to 3,923,048 _RS17215 DDA3937_RS17220: DDA3937_RS17220 - 30S ribosomal protein S18, at 3,923,090 to 3,923,317 _RS17220 DDA3937_RS17225: DDA3937_RS17225 - primosomal replication protein N, at 3,923,322 to 3,923,642 _RS17225 DDA3937_RS17230: DDA3937_RS17230 - 30S ribosomal protein S6, at 3,923,648 to 3,924,040 _RS17230 DDA3937_RS17235: DDA3937_RS17235 - esterase, at 3,924,262 to 3,925,011 _RS17235 Position (kb) 3923 3924Strain fitness (log2 ratio) -1 0 1at 3922.451 kb on + strandat 3922.452 kb on - strandat 3922.452 kb on - strandat 3922.487 kb on + strandat 3922.487 kb on + strandat 3922.487 kb on + strandat 3922.488 kb on - strandat 3922.502 kb on + strandat 3922.502 kb on + strandat 3922.503 kb on - strandat 3922.503 kb on - strandat 3922.503 kb on - strandat 3922.503 kb on - strandat 3922.518 kb on - strandat 3922.536 kb on + strandat 3922.537 kb on - strandat 3923.049 kb on + strandat 3924.205 kb on + strandat 3924.205 kb on + strandat 3924.205 kb on + strandat 3924.205 kb on + strandat 3924.206 kb on - strandat 3924.229 kb on + strandat 3924.248 kb on + strandat 3924.249 kb on - strandat 3924.299 kb on - strandat 3924.344 kb on + strand, within DDA3937_RS17235at 3924.344 kb on + strand, within DDA3937_RS17235at 3924.345 kb on - strand, within DDA3937_RS17235at 3924.376 kb on + strand, within DDA3937_RS17235at 3924.377 kb on - strand, within DDA3937_RS17235at 3924.387 kb on - strand, within DDA3937_RS17235at 3924.517 kb on + strand, within DDA3937_RS17235at 3924.629 kb on + strand, within DDA3937_RS17235at 3924.630 kb on - strand, within DDA3937_RS17235

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Per-strain Table

Position Strand Gene LocusTag Fraction Atlantic
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3,922,451 + -1.3
3,922,452 - -1.1
3,922,452 - -0.3
3,922,487 + -1.3
3,922,487 + -1.1
3,922,487 + -1.1
3,922,488 - -0.3
3,922,502 + -1.0
3,922,502 + +1.4
3,922,503 - +0.4
3,922,503 - +1.1
3,922,503 - -0.3
3,922,503 - +0.5
3,922,518 - -0.4
3,922,536 + +1.0
3,922,537 - +0.5
3,923,049 + +0.1
3,924,205 + -1.1
3,924,205 + -0.9
3,924,205 + -1.4
3,924,205 + +0.7
3,924,206 - +0.9
3,924,229 + +0.3
3,924,248 + -1.5
3,924,249 - +0.3
3,924,299 - +0.4
3,924,344 + DDA3937_RS17235 0.11 -0.3
3,924,344 + DDA3937_RS17235 0.11 -1.4
3,924,345 - DDA3937_RS17235 0.11 -1.1
3,924,376 + DDA3937_RS17235 0.15 +0.1
3,924,377 - DDA3937_RS17235 0.15 -0.3
3,924,387 - DDA3937_RS17235 0.17 +1.1
3,924,517 + DDA3937_RS17235 0.34 -1.5
3,924,629 + DDA3937_RS17235 0.49 +0.9
3,924,630 - DDA3937_RS17235 0.49 -0.8

Or see this region's nucleotide sequence