Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS17160

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
3,909,824	-		DDA3937_RS17155	0.76	-2.5
3,909,824	-		DDA3937_RS17155	0.76	-1.3
3,909,882	+		DDA3937_RS17155	0.78	-0.7
3,909,883	-		DDA3937_RS17155	0.78	+1.0
3,909,883	-		DDA3937_RS17155	0.78	-1.3
3,910,014	-		DDA3937_RS17155	0.81	-1.3
3,910,014	-		DDA3937_RS17155	0.81	-1.3
3,910,127	-		DDA3937_RS17155	0.85	-1.9
3,910,273	+		DDA3937_RS17155	0.88	-0.3
3,910,273	+		DDA3937_RS17155	0.88	-1.6
3,910,273	+		DDA3937_RS17155	0.88	-2.4
3,910,273	+		DDA3937_RS17155	0.88	-0.3
3,910,273	+		DDA3937_RS17155	0.88	-1.1
3,910,273	+		DDA3937_RS17155	0.88	-1.3
3,910,274	-		DDA3937_RS17155	0.88	-0.9
3,910,516	-				+3.4
3,910,709	-				+0.7
3,910,730	+				-2.0
3,910,730	+				-2.6
3,910,731	-				+2.5
3,910,731	-				-0.6
3,910,846	-				+1.9
3,910,916	+		DDA3937_RS17160	0.12	+0.3
3,910,916	+		DDA3937_RS17160	0.12	-2.8
3,910,916	+		DDA3937_RS17160	0.12	+0.7
3,910,916	+		DDA3937_RS17160	0.12	-1.6
3,910,916	+		DDA3937_RS17160	0.12	-2.5
3,910,916	+		DDA3937_RS17160	0.12	-1.9
3,910,916	+		DDA3937_RS17160	0.12	-2.6
3,910,917	-		DDA3937_RS17160	0.12	-2.0
3,910,923	-		DDA3937_RS17160	0.13	-0.3
3,910,923	-		DDA3937_RS17160	0.13	-0.1
3,910,997	+		DDA3937_RS17160	0.17	-1.6
3,910,997	+		DDA3937_RS17160	0.17	-2.6
3,910,997	+		DDA3937_RS17160	0.17	+0.5
3,910,997	+		DDA3937_RS17160	0.17	-1.1
3,910,998	-		DDA3937_RS17160	0.17	-0.6
3,910,998	-		DDA3937_RS17160	0.17	-1.5
3,910,998	-		DDA3937_RS17160	0.17	-1.8
3,910,998	-		DDA3937_RS17160	0.17	-0.0
3,910,998	-		DDA3937_RS17160	0.17	-0.6
3,910,998	-		DDA3937_RS17160	0.17	-1.6
3,910,998	-		DDA3937_RS17160	0.17	-3.3
3,911,002	-		DDA3937_RS17160	0.17	-0.4
3,911,002	-		DDA3937_RS17160	0.17	-1.1
3,911,004	-		DDA3937_RS17160	0.17	-2.0
3,911,188	-		DDA3937_RS17160	0.28	-0.5
3,911,188	-		DDA3937_RS17160	0.28	-0.0
3,911,263	-		DDA3937_RS17160	0.32	-2.1
3,911,279	+		DDA3937_RS17160	0.33	+2.7
3,911,456	+		DDA3937_RS17160	0.43	-0.6
3,911,456	+		DDA3937_RS17160	0.43	-2.2
3,911,456	+		DDA3937_RS17160	0.43	-0.6
3,911,457	-		DDA3937_RS17160	0.43	-1.6
3,911,457	-		DDA3937_RS17160	0.43	+2.1
3,911,457	-		DDA3937_RS17160	0.43	-2.5
3,911,457	-		DDA3937_RS17160	0.43	-1.6
3,911,457	-		DDA3937_RS17160	0.43	-1.8
3,911,457	-		DDA3937_RS17160	0.43	-1.5
3,911,457	-		DDA3937_RS17160	0.43	+3.7
3,911,459	+		DDA3937_RS17160	0.43	-1.7
3,911,460	-		DDA3937_RS17160	0.43	-2.1
3,911,731	-		DDA3937_RS17160	0.59	+0.2
3,911,760	+				-0.3
3,911,826	-		DDA3937_RS17160	0.65	-0.9
3,911,947	-		DDA3937_RS17160	0.72	-0.6
3,911,950	-		DDA3937_RS17160	0.72	-1.5
3,911,967	-		DDA3937_RS17160	0.73	-2.0
3,911,983	+		DDA3937_RS17160	0.74	-1.3
3,912,014	+		DDA3937_RS17160	0.75	+0.5
3,912,015	-		DDA3937_RS17160	0.75	-1.1
3,912,034	-		DDA3937_RS17160	0.77	-1.8
3,912,034	-		DDA3937_RS17160	0.77	-2.9
3,912,074	+		DDA3937_RS17160	0.79	-0.4
3,912,218	+		DDA3937_RS17160	0.87	-0.1
3,912,219	-				+0.7
3,912,219	-		DDA3937_RS17160	0.87	-2.0
3,912,303	+				-0.9
3,912,325	+				-2.6
3,912,325	+				-0.5
3,912,326	-				-2.9
3,912,477	+				-1.5
3,912,492	-				+1.2
3,912,492	-				+0.4
3,912,492	-				-0.1
3,912,533	+				+0.7
3,912,534	-				-1.2
3,912,534	-				-2.3
3,912,537	+				-1.0
3,912,537	+				-1.2
3,912,538	-				+1.1
3,912,538	-				+1.9
3,912,538	-				-0.9
3,912,547	+				-1.0
3,912,547	+				-0.3
3,912,547	+				+1.0
3,912,547	+				+0.7
3,912,547	+				+2.3
3,912,547	+				+0.1
3,912,548	-				-3.0
3,912,548	-				-0.0
3,912,548	-				+0.5
3,912,548	-				-0.3
3,912,548	-				+0.2
3,912,548	-				+1.2
3,912,548	-				-1.1
3,912,548	-				-1.9
3,912,548	-				+0.9
3,912,548	-				+0.1
3,912,548	-				+0.7
3,912,548	-				-0.3
3,912,548	-				-0.3
3,912,548	-				-1.0
3,912,548	-				+0.4
3,912,548	-				-0.5
3,912,548	-				-0.2
3,912,548	-				+1.5
3,912,567	+				-0.2
3,912,568	-				-0.1
3,912,571	+				-0.0
3,912,571	+				-1.2
3,912,571	+				+0.9
3,912,571	+				-0.6
3,912,572	-				-0.2
3,912,572	-				+0.4
3,912,572	-				-2.1
3,912,572	-				-0.1
3,912,580	+				+0.9
3,912,580	+				+0.5
3,912,581	-				-1.0
3,912,581	-				+0.9
3,912,581	-				-0.2
3,912,584	+				+0.1
3,912,584	+				+1.2
3,912,584	+				-1.6
3,912,584	+				+0.6
3,912,584	+				+2.7
3,912,585	-				-0.3
3,912,585	-				+0.3
3,912,585	-				+0.9
3,912,586	+				-0.9
3,912,586	+				-1.1
3,912,586	+				+2.6
3,912,587	-				+0.7
3,912,587	-				-0.2
3,912,587	-				-1.4
3,912,587	-				+0.1
3,912,587	-				-1.0
3,912,590	+				-0.9
3,912,590	+				+1.0
3,912,590	+				-1.5
3,912,590	+				-0.7
3,912,590	+				-0.6
3,912,590	+				-1.4
3,912,591	-				-0.5
3,912,591	-				+0.4
3,912,591	-				-0.5
3,912,647	+				-0.3
3,912,647	+				-0.5
3,912,647	+				-1.3
3,912,648	-				-0.1
3,912,648	-				-0.3
3,912,648	-				-1.1
3,912,698	+				-1.5
3,912,699	-				+1.6
3,912,730	+				-2.5
3,912,730	+				-0.4
3,912,730	+				-1.0
3,912,730	+				-0.5
3,912,730	+				+0.7
3,912,730	+				+0.1
3,912,730	+				-0.6
3,912,730	+				-1.8
3,912,730	+				+0.5
3,912,731	-				+0.8
3,912,731	-				+0.9
3,912,731	-				-0.9
3,912,731	-				-0.2
3,912,731	-				+0.2
3,912,731	-				-0.3
3,912,731	-				+0.2
3,912,731	-				+0.6
3,912,731	-				-0.0
3,912,736	+				-0.1
3,912,737	-				-1.1
3,912,737	-				-1.1
3,912,737	-				-0.4
3,912,737	-				-1.1
3,912,737	-				-0.5
3,912,737	-				-0.5
3,912,741	+				+0.6
3,912,741	+				+0.8
3,912,741	+				+0.4
3,912,741	+				-0.3
3,912,741	+				+0.6
3,912,741	+				-0.3
3,912,741	+				-0.1
3,912,742	-				+0.5
3,912,742	-				+0.1
3,912,742	-				+0.0
3,912,742	-				+0.1
3,912,742	-				+0.6
3,912,742	-				-2.6
3,912,751	+				+0.9
3,912,752	-				-1.3
3,912,776	+				+0.8
3,912,789	+				-1.0
3,912,790	-				-0.1
3,912,790	-				-1.0
3,912,806	+				-1.6
3,913,023	+		DDA3937_RS17165	0.31	-1.4
3,913,023	+		DDA3937_RS17165	0.31	+0.5
3,913,024	-		DDA3937_RS17165	0.31	-1.0
3,913,024	-		DDA3937_RS17165	0.31	+0.7
3,913,024	-		DDA3937_RS17165	0.31	-0.1
3,913,055	+		DDA3937_RS17165	0.36	-0.1
3,913,055	+		DDA3937_RS17165	0.36	-1.1
3,913,055	+		DDA3937_RS17165	0.36	+0.7
3,913,055	+		DDA3937_RS17165	0.36	-1.0
3,913,056	-		DDA3937_RS17165	0.36	+0.1
3,913,056	-		DDA3937_RS17165	0.36	-0.3
3,913,056	-		DDA3937_RS17165	0.36	+1.2
3,913,071	+		DDA3937_RS17165	0.38	-0.6
3,913,141	+		DDA3937_RS17165	0.49	-0.2
3,913,141	+		DDA3937_RS17165	0.49	+0.0
3,913,141	+				+1.7
3,913,141	+		DDA3937_RS17165	0.49	+4.2
3,913,141	+		DDA3937_RS17165	0.49	-1.7
3,913,141	+		DDA3937_RS17165	0.49	-0.7
3,913,242	+		DDA3937_RS17165	0.65	-1.3
3,913,242	+		DDA3937_RS17165	0.65	+0.8
3,913,242	+		DDA3937_RS17165	0.65	-1.3
3,913,242	+		DDA3937_RS17165	0.65	-0.9
3,913,242	+		DDA3937_RS17165	0.65	-0.2
3,913,242	+		DDA3937_RS17165	0.65	-0.5
3,913,242	+		DDA3937_RS17165	0.65	+0.3
3,913,243	-		DDA3937_RS17165	0.65	-0.6
3,913,243	-		DDA3937_RS17165	0.65	-1.8
3,913,243	-		DDA3937_RS17165	0.65	-2.7
3,913,244	+		DDA3937_RS17165	0.66	-0.5
3,913,244	+		DDA3937_RS17165	0.66	-2.0
3,913,245	-		DDA3937_RS17165	0.66	+0.0
3,913,284	+		DDA3937_RS17165	0.72	-0.6
3,913,284	+		DDA3937_RS17165	0.72	-1.3
3,913,284	+		DDA3937_RS17165	0.72	+0.1
3,913,284	+		DDA3937_RS17165	0.72	-0.7
3,913,285	-		DDA3937_RS17165	0.72	+2.9
3,913,285	-		DDA3937_RS17165	0.72	-0.8
3,913,365	+		DDA3937_RS17165	0.85	-0.1
3,913,365	+		DDA3937_RS17165	0.85	+1.1
3,913,365	+		DDA3937_RS17165	0.85	+1.4
3,913,369	-		DDA3937_RS17165	0.85	+0.9
3,913,392	+		DDA3937_RS17165	0.89	-0.9
3,913,393	-		DDA3937_RS17165	0.89	+0.1