Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS16510

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
3,761,625	-				-0.6
3,761,671	+				+0.6
3,761,671	+		DDA3937_RS16505	0.15	-1.2
3,761,671	+		DDA3937_RS16505	0.15	+2.5
3,761,671	+		DDA3937_RS16505	0.15	+0.8
3,761,671	+		DDA3937_RS16505	0.15	-0.0
3,761,671	+				-0.9
3,761,672	-		DDA3937_RS16505	0.15	+0.6
3,761,672	-		DDA3937_RS16505	0.15	+0.2
3,761,722	+		DDA3937_RS16505	0.22	-0.9
3,761,785	+		DDA3937_RS16505	0.31	+1.0
3,761,785	+		DDA3937_RS16505	0.31	+0.2
3,761,843	+		DDA3937_RS16505	0.39	-2.4
3,761,843	+		DDA3937_RS16505	0.39	+1.3
3,761,843	+		DDA3937_RS16505	0.39	-0.2
3,761,861	-		DDA3937_RS16505	0.41	+0.5
3,761,861	-		DDA3937_RS16505	0.41	-0.2
3,761,960	+		DDA3937_RS16505	0.55	-0.7
3,762,065	+		DDA3937_RS16505	0.69	-2.0
3,762,066	-		DDA3937_RS16505	0.69	+1.8
3,762,066	-		DDA3937_RS16505	0.69	-1.2
3,762,066	-		DDA3937_RS16505	0.69	-1.4
3,762,069	+		DDA3937_RS16505	0.70	+0.7
3,762,069	+		DDA3937_RS16505	0.70	-2.8
3,762,069	+		DDA3937_RS16505	0.70	+0.3
3,762,069	+		DDA3937_RS16505	0.70	-1.3
3,762,069	+				+1.0
3,762,069	+		DDA3937_RS16505	0.70	-0.8
3,762,069	+		DDA3937_RS16505	0.70	+2.5
3,762,069	+		DDA3937_RS16505	0.70	-0.8
3,762,069	+		DDA3937_RS16505	0.70	-1.2
3,762,070	-		DDA3937_RS16505	0.70	-1.1
3,762,070	-		DDA3937_RS16505	0.70	+0.3
3,762,070	-		DDA3937_RS16505	0.70	-1.3
3,762,070	-		DDA3937_RS16505	0.70	-0.4
3,762,070	-		DDA3937_RS16505	0.70	+2.0
3,762,070	-		DDA3937_RS16505	0.70	-1.2
3,762,070	-		DDA3937_RS16505	0.70	-0.0
3,762,070	-		DDA3937_RS16505	0.70	-2.1
3,762,070	-		DDA3937_RS16505	0.70	-0.7
3,762,070	-		DDA3937_RS16505	0.70	-2.4
3,762,104	+		DDA3937_RS16505	0.74	+0.8
3,762,171	+		DDA3937_RS16505	0.84	-1.2
3,762,172	-		DDA3937_RS16505	0.84	+0.1
3,762,184	+		DDA3937_RS16505	0.85	+0.6
3,762,211	-		DDA3937_RS16505	0.89	+0.5
3,762,214	-		DDA3937_RS16505	0.89	+1.8
3,762,228	+				+0.9
3,762,228	+				-0.4
3,762,228	+				+0.6
3,762,229	-				+0.5
3,762,229	-				+0.3
3,762,229	-				+1.0
3,762,275	+				+0.1
3,762,291	-				-0.4
3,762,316	+				-1.5
3,762,317	-				-0.6
3,762,317	-				+0.1
3,762,317	-				-1.7
3,762,320	+				-0.9
3,762,321	-				-1.8
3,762,366	+				+1.1
3,762,366	+				-0.9
3,762,367	-				-1.3
3,762,367	-				-1.4
3,762,367	-				+0.4
3,762,367	-				+1.1
3,762,373	+				+1.0
3,762,373	+				-1.2
3,762,400	+				+0.2
3,762,401	-				-0.2
3,762,423	+				-2.1
3,762,424	-				-1.8
3,762,424	-				+1.3
3,762,424	-				+0.1
3,762,424	-				-0.4
3,762,425	+				-0.0
3,762,425	+				-0.7
3,762,425	+				+0.1
3,762,425	+				+2.1
3,762,426	-				-0.7
3,762,426	-				+0.6
3,762,426	-				-1.5
3,762,427	+				-0.6
3,762,427	+				-0.5
3,762,428	-				-0.2
3,762,429	+				+1.2
3,762,429	+				-0.4
3,762,430	-				-0.7
3,762,448	-				-0.3
3,762,452	+				-1.4
3,762,487	+				-1.9
3,762,487	+				+0.6
3,762,488	-				+1.1
3,762,488	-				-0.6
3,762,488	-				-0.2
3,762,769	-				-1.8
3,762,778	-				-0.2
3,762,841	+				+0.1
3,762,842	-				+0.5
3,762,842	-				+1.2
3,762,883	+		DDA3937_RS16515	0.16	-0.7
3,762,883	+		DDA3937_RS16515	0.16	-0.4
3,762,883	+		DDA3937_RS16515	0.16	+0.5
3,762,883	+		DDA3937_RS16515	0.16	-0.6
3,762,883	+		DDA3937_RS16515	0.16	+0.3
3,762,883	+		DDA3937_RS16515	0.16	-0.2
3,762,883	+		DDA3937_RS16515	0.16	-0.5
3,762,884	-		DDA3937_RS16515	0.16	-1.4
3,762,884	-		DDA3937_RS16515	0.16	-0.2
3,762,884	-		DDA3937_RS16515	0.16	+1.9
3,762,884	-		DDA3937_RS16515	0.16	+0.6
3,762,884	-				+1.6
3,762,884	-		DDA3937_RS16515	0.16	+2.9
3,762,886	-		DDA3937_RS16515	0.16	-2.4
3,762,886	-		DDA3937_RS16515	0.16	+0.6
3,762,886	-		DDA3937_RS16515	0.16	+0.2
3,762,911	+		DDA3937_RS16515	0.21	+0.6
3,762,911	+		DDA3937_RS16515	0.21	+0.2
3,762,911	+		DDA3937_RS16515	0.21	+0.9
3,762,911	+		DDA3937_RS16515	0.21	+0.3
3,762,912	-		DDA3937_RS16515	0.21	-0.4
3,762,912	-		DDA3937_RS16515	0.21	+1.6
3,762,912	-		DDA3937_RS16515	0.21	-0.2
3,762,912	-		DDA3937_RS16515	0.21	-1.2
3,762,912	-		DDA3937_RS16515	0.21	-1.3
3,762,912	-		DDA3937_RS16515	0.21	-0.4
3,762,912	-		DDA3937_RS16515	0.21	-1.5
3,762,914	+		DDA3937_RS16515	0.21	-2.2
3,762,914	+		DDA3937_RS16515	0.21	-0.2
3,762,936	+		DDA3937_RS16515	0.25	+1.0
3,762,945	+		DDA3937_RS16515	0.26	-0.6
3,762,945	+		DDA3937_RS16515	0.26	-0.4
3,762,946	-		DDA3937_RS16515	0.27	-1.4
3,762,946	-		DDA3937_RS16515	0.27	+0.5
3,762,946	-		DDA3937_RS16515	0.27	+0.4
3,762,946	-		DDA3937_RS16515	0.27	+0.6
3,762,946	-		DDA3937_RS16515	0.27	+0.4
3,762,983	+		DDA3937_RS16515	0.33	-0.4
3,762,984	-		DDA3937_RS16515	0.33	+1.4
3,763,103	+		DDA3937_RS16515	0.54	+1.4
3,763,140	+		DDA3937_RS16515	0.60	+0.3
3,763,147	+		DDA3937_RS16515	0.61	-1.5
3,763,164	+		DDA3937_RS16515	0.64	-0.7
3,763,165	-		DDA3937_RS16515	0.64	-0.7
3,763,170	+		DDA3937_RS16515	0.65	+1.2
3,763,171	-		DDA3937_RS16515	0.65	+0.2
3,763,171	-		DDA3937_RS16515	0.65	-1.8
3,763,171	-		DDA3937_RS16515	0.65	-0.1
3,763,210	+		DDA3937_RS16515	0.72	-0.1
3,763,210	+		DDA3937_RS16515	0.72	-1.3
3,763,218	+		DDA3937_RS16515	0.73	-0.5
3,763,218	+		DDA3937_RS16515	0.73	+1.6
3,763,218	+		DDA3937_RS16515	0.73	+0.4
3,763,219	-		DDA3937_RS16515	0.73	-1.7
3,763,219	-		DDA3937_RS16515	0.73	-0.7
3,763,219	-		DDA3937_RS16515	0.73	-1.3
3,763,234	-		DDA3937_RS16515	0.76	-0.2
3,763,345	+				-1.5
3,763,346	-				+0.0
3,763,375	-				+0.1
3,763,387	+				+1.2
3,763,388	-				+0.1
3,763,399	+				+0.3
3,763,419	+				-0.4
3,763,422	-				-0.7
3,763,498	+				-1.1
3,763,498	+				-1.2
3,763,499	-				-1.2
3,763,500	+				+0.5
3,763,500	+				+0.1
3,763,500	+				+0.1
3,763,500	+				-2.9
3,763,500	+				-0.9
3,763,500	+				-0.4
3,763,501	-				+1.4
3,763,501	-				+0.6
3,763,501	-				-2.3
3,763,501	-				+2.6
3,763,509	+				+1.5
3,763,510	-				-0.3
3,763,510	-				+0.2
3,763,510	-				-1.2
3,763,510	-				+0.1
3,763,542	+				+1.2
3,763,543	-				+0.7
3,763,543	-				+0.6
3,763,557	+				-0.7
3,763,557	+				-0.6
3,763,558	-				+0.2
3,763,558	-				+1.6
3,763,558	-				+0.5
3,763,558	-				+2.6
3,763,558	-				-0.4
3,763,558	-				+1.2
3,763,620	+		DDA3937_RS16520	0.15	+4.6
3,763,620	+		DDA3937_RS16520	0.15	-0.3
3,763,620	+		DDA3937_RS16520	0.15	-1.8
3,763,620	+		DDA3937_RS16520	0.15	-0.1
3,763,620	+		DDA3937_RS16520	0.15	-0.4
3,763,621	-		DDA3937_RS16520	0.15	-0.1
3,763,621	-		DDA3937_RS16520	0.15	-0.9
3,763,621	-		DDA3937_RS16520	0.15	+0.3
3,763,679	-		DDA3937_RS16520	0.20	-1.9
3,763,679	-		DDA3937_RS16520	0.20	+0.1
3,763,693	+		DDA3937_RS16520	0.21	-1.8
3,763,693	+		DDA3937_RS16520	0.21	-0.2
3,763,712	-		DDA3937_RS16520	0.22	-1.2