Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS14835

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
3,403,442	-				-0.5
3,403,442	-				-0.7
3,403,485	+				+0.1
3,403,485	+				+0.9
3,403,485	+				+0.5
3,403,486	-				+0.0
3,403,486	-				-1.0
3,403,486	-				-0.8
3,403,486	-				-1.0
3,403,500	+				-2.7
3,403,566	+		DDA3937_RS14830	0.11	+1.2
3,403,567	-		DDA3937_RS14830	0.11	+0.4
3,403,737	+		DDA3937_RS14830	0.31	+1.0
3,403,737	+		DDA3937_RS14830	0.31	-1.5
3,403,737	+		DDA3937_RS14830	0.31	-0.6
3,403,738	-		DDA3937_RS14830	0.31	-0.5
3,403,779	+		DDA3937_RS14830	0.36	+0.8
3,403,889	+		DDA3937_RS14830	0.49	-0.5
3,403,890	-		DDA3937_RS14830	0.49	-1.2
3,403,890	-		DDA3937_RS14830	0.49	-1.1
3,403,890	-		DDA3937_RS14830	0.49	+0.3
3,403,890	-		DDA3937_RS14830	0.49	-2.2
3,403,953	+		DDA3937_RS14830	0.56	+0.6
3,403,985	-		DDA3937_RS14830	0.60	-0.4
3,404,031	+		DDA3937_RS14830	0.65	+2.3
3,404,031	+		DDA3937_RS14830	0.65	-1.7
3,404,031	+		DDA3937_RS14830	0.65	+0.2
3,404,031	+		DDA3937_RS14830	0.65	-0.2
3,404,032	-		DDA3937_RS14830	0.65	-1.5
3,404,191	+		DDA3937_RS14830	0.84	+1.1
3,404,191	+		DDA3937_RS14830	0.84	+1.6
3,404,192	-		DDA3937_RS14830	0.84	-1.1
3,404,192	-		DDA3937_RS14830	0.84	+0.5
3,404,192	-		DDA3937_RS14830	0.84	-0.2
3,404,298	+				-1.1
3,404,298	+				+1.1
3,404,298	+				-0.2
3,404,298	+				-0.0
3,404,298	+				-1.0
3,404,298	+				+0.1
3,404,298	+				-3.1
3,404,298	+				-0.9
3,404,298	+				-0.5
3,404,299	-				-0.1
3,404,299	-				-1.7
3,404,299	-				-0.3
3,404,299	-				-0.4
3,404,299	-				-0.3
3,404,299	-				-0.7
3,404,396	+				+4.7
3,404,396	+				-0.5
3,404,397	-				-0.2
3,404,397	-				-0.2
3,404,397	-				+0.3
3,404,509	+				+0.7
3,404,509	+				+4.9
3,404,509	+				-0.7
3,404,510	-				+1.6
3,404,585	+				+0.0
3,404,586	-				-1.7
3,404,586	-				-1.1
3,404,586	-				+1.3
3,404,586	-				-1.5
3,404,586	-				+0.0
3,404,586	-				+0.8
3,404,586	-				+1.8
3,404,603	-				+0.7
3,404,603	-				+0.4
3,404,625	-				-2.0
3,404,625	-				-1.2
3,404,776	+		DDA3937_RS14835	0.14	-1.0
3,404,776	+		DDA3937_RS14835	0.14	-0.8
3,404,777	-		DDA3937_RS14835	0.14	-1.1
3,404,827	+		DDA3937_RS14835	0.17	-0.3
3,404,828	-		DDA3937_RS14835	0.17	+0.2
3,404,828	-		DDA3937_RS14835	0.17	-1.1
3,404,828	-		DDA3937_RS14835	0.17	+4.6
3,404,828	-		DDA3937_RS14835	0.17	-0.5
3,404,828	-		DDA3937_RS14835	0.17	+0.5
3,405,067	+		DDA3937_RS14835	0.26	+1.5
3,405,079	-		DDA3937_RS14835	0.27	-0.7
3,405,094	-		DDA3937_RS14835	0.27	-0.0
3,405,094	-		DDA3937_RS14835	0.27	-1.5
3,405,133	+		DDA3937_RS14835	0.29	-0.9
3,405,133	+		DDA3937_RS14835	0.29	-0.7
3,405,133	+		DDA3937_RS14835	0.29	-0.7
3,405,174	-		DDA3937_RS14835	0.31	-1.7
3,405,179	+		DDA3937_RS14835	0.31	+0.1
3,405,179	+		DDA3937_RS14835	0.31	-0.4
3,405,179	+		DDA3937_RS14835	0.31	+1.5
3,405,179	+		DDA3937_RS14835	0.31	-2.5
3,405,179	+		DDA3937_RS14835	0.31	+0.3
3,405,179	+		DDA3937_RS14835	0.31	+1.6
3,405,179	+		DDA3937_RS14835	0.31	-0.1
3,405,180	-		DDA3937_RS14835	0.31	-0.5
3,405,180	-		DDA3937_RS14835	0.31	-0.6
3,405,180	-		DDA3937_RS14835	0.31	+1.2
3,405,180	-		DDA3937_RS14835	0.31	+0.6
3,405,180	-		DDA3937_RS14835	0.31	-0.1
3,405,180	-		DDA3937_RS14835	0.31	-0.8
3,405,180	-		DDA3937_RS14835	0.31	-1.4
3,405,180	-		DDA3937_RS14835	0.31	-0.4
3,405,186	+		DDA3937_RS14835	0.31	+0.5
3,405,187	-		DDA3937_RS14835	0.31	-1.5
3,405,287	+		DDA3937_RS14835	0.35	-1.0
3,405,505	-		DDA3937_RS14835	0.44	-0.1
3,405,505	-		DDA3937_RS14835	0.44	-1.3
3,405,505	-		DDA3937_RS14835	0.44	-1.2
3,405,505	-		DDA3937_RS14835	0.44	+0.5
3,405,515	+		DDA3937_RS14835	0.45	+1.0
3,405,515	+		DDA3937_RS14835	0.45	-0.4
3,405,516	-		DDA3937_RS14835	0.45	-2.0
3,405,516	-		DDA3937_RS14835	0.45	-1.7
3,405,516	-		DDA3937_RS14835	0.45	-1.1
3,405,543	+		DDA3937_RS14835	0.46	+0.9
3,405,543	+		DDA3937_RS14835	0.46	-2.6
3,405,543	+		DDA3937_RS14835	0.46	-0.2
3,405,544	-		DDA3937_RS14835	0.46	+1.8
3,405,544	-		DDA3937_RS14835	0.46	+0.7
3,405,544	-		DDA3937_RS14835	0.46	+1.0
3,405,544	-		DDA3937_RS14835	0.46	+0.1
3,405,544	-		DDA3937_RS14835	0.46	+2.0
3,405,568	+		DDA3937_RS14835	0.47	-1.0
3,405,568	+		DDA3937_RS14835	0.47	-2.0
3,405,568	+		DDA3937_RS14835	0.47	-0.5
3,405,568	+		DDA3937_RS14835	0.47	-0.1
3,405,569	-		DDA3937_RS14835	0.47	+0.5
3,405,570	+		DDA3937_RS14835	0.47	-0.5
3,405,570	+		DDA3937_RS14835	0.47	+0.8
3,405,570	+		DDA3937_RS14835	0.47	-1.7
3,405,571	-		DDA3937_RS14835	0.47	+1.5
3,405,571	-		DDA3937_RS14835	0.47	-1.0
3,405,571	-		DDA3937_RS14835	0.47	-1.0
3,405,571	-				-0.8
3,405,571	-		DDA3937_RS14835	0.47	-0.4
3,405,679	+		DDA3937_RS14835	0.51	-1.4
3,405,680	-		DDA3937_RS14835	0.51	-1.2
3,405,680	-		DDA3937_RS14835	0.51	-1.2
3,405,857	+		DDA3937_RS14835	0.59	+0.2
3,405,858	-		DDA3937_RS14835	0.59	-0.4
3,405,910	+		DDA3937_RS14835	0.61	-1.0
3,405,910	+		DDA3937_RS14835	0.61	+0.8
3,405,911	-		DDA3937_RS14835	0.61	-0.2
3,405,914	-		DDA3937_RS14835	0.61	+0.4
3,406,029	+		DDA3937_RS14835	0.66	+0.2
3,406,029	+		DDA3937_RS14835	0.66	-0.7
3,406,029	+				-0.1
3,406,029	+		DDA3937_RS14835	0.66	+0.7
3,406,029	+		DDA3937_RS14835	0.66	-0.1
3,406,030	-		DDA3937_RS14835	0.66	-0.6
3,406,030	-		DDA3937_RS14835	0.66	-2.3
3,406,030	-		DDA3937_RS14835	0.66	-0.7
3,406,040	+		DDA3937_RS14835	0.66	-0.9
3,406,040	+		DDA3937_RS14835	0.66	-1.3
3,406,150	-		DDA3937_RS14835	0.71	-1.8
3,406,160	+		DDA3937_RS14835	0.71	+0.9
3,406,161	-		DDA3937_RS14835	0.71	-0.5
3,406,161	-		DDA3937_RS14835	0.71	+3.1
3,406,177	+				+0.5
3,406,291	+		DDA3937_RS14835	0.76	-0.9
3,406,291	+		DDA3937_RS14835	0.76	-0.9
3,406,291	+		DDA3937_RS14835	0.76	-0.1
3,406,292	-		DDA3937_RS14835	0.76	-0.9
3,406,292	-		DDA3937_RS14835	0.76	-0.5
3,406,313	-		DDA3937_RS14835	0.77	-2.2
3,406,342	+		DDA3937_RS14835	0.78	-0.6
3,406,439	+		DDA3937_RS14835	0.82	-0.0
3,406,440	-		DDA3937_RS14835	0.82	-0.1
3,406,495	+		DDA3937_RS14835	0.85	-0.1
3,406,495	+		DDA3937_RS14835	0.85	-0.4
3,406,495	+		DDA3937_RS14835	0.85	-0.7
3,406,496	-		DDA3937_RS14835	0.85	-0.5
3,406,553	+		DDA3937_RS14835	0.87	-2.4
3,406,554	-		DDA3937_RS14835	0.87	+2.1
3,406,554	-		DDA3937_RS14835	0.87	-0.6
3,406,649	+				+0.4
3,406,649	+				-2.3
3,406,649	+				-0.7
3,406,649	+				-0.2
3,406,650	-				-0.7
3,406,795	+				-0.8
3,406,795	+				+0.5
3,406,795	+				+0.6
3,406,795	+				-0.4
3,406,796	-				-0.5
3,406,796	-				-0.8
3,406,842	+				+0.5
3,406,853	+				+0.2
3,406,854	-				-1.5
3,406,861	+				+1.3
3,406,867	+				+1.5
3,406,867	+				-0.6
3,406,868	-				-0.6
3,406,868	-				+0.5
3,406,955	+				-0.8
3,406,956	-				-2.1
3,406,974	+				+0.4
3,406,977	+				+0.5
3,406,978	-				+0.5
3,406,978	-				+0.4
3,406,978	-				+0.4
3,406,982	+				+1.5
3,406,982	+				+0.1
3,406,982	+				+0.6
3,406,982	+				-0.8
3,406,983	-				+0.8
3,407,013	+				-0.1
3,407,014	-				-2.4
3,407,071	+				+1.7
3,407,072	-				+2.9
3,407,074	+				-0.4
3,407,074	+				-1.5
3,407,075	-				-0.3
3,407,085	+				+1.2
3,407,085	+				-1.3
3,407,085	+				+2.5
3,407,086	-				-0.3
3,407,086	-				+2.5
3,407,086	-				-0.1
3,407,086	-				-0.5
3,407,086	-				+0.2
3,407,086	-				+0.4
3,407,087	+				-1.3
3,407,088	-				+0.7
3,407,088	-				+1.3
3,407,163	+				-0.1
3,407,191	+				-1.1
3,407,313	-				-1.4
3,407,322	+		DDA3937_RS14845	0.12	+0.4
3,407,322	+		DDA3937_RS14845	0.12	+0.1
3,407,380	+		DDA3937_RS14845	0.31	-1.3
3,407,436	+		DDA3937_RS14845	0.49	-0.3
3,407,436	+		DDA3937_RS14845	0.49	+1.6
3,407,437	-		DDA3937_RS14845	0.49	+0.1
3,407,437	-				-0.8
3,407,488	-		DDA3937_RS14845	0.66	+2.0
3,407,497	-		DDA3937_RS14845	0.69	-2.2
3,407,537	-		DDA3937_RS14845	0.82	-2.2
3,407,592	-				-0.7
3,407,608	-				-0.4
3,407,608	-				-1.7
3,407,608	-				-1.4
3,407,608	-				-0.6
3,407,608	-				-0.5
3,407,610	-				-0.3
3,407,610	-				-1.5
3,407,647	-				-1.2