Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS14615

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
3,344,533	-				+0.8
3,344,533	-				-1.4
3,344,533	-				+0.2
3,344,537	+				+0.4
3,344,538	-				+0.6
3,344,604	+				+0.0
3,344,635	+				-0.6
3,344,677	+				+0.0
3,344,677	+				+0.5
3,344,678	-				+0.5
3,344,709	+				-2.3
3,344,720	+				-1.0
3,344,720	+				-0.7
3,344,721	-				-0.8
3,344,721	-				-0.9
3,344,721	-				-1.5
3,344,727	-				-1.0
3,344,727	-				+3.0
3,344,727	-				+0.3
3,344,727	-				-0.6
3,344,729	+				-1.2
3,344,730	-				-0.4
3,344,730	-				-0.5
3,344,730	-				+0.2
3,344,736	-				-0.9
3,344,736	-				+1.3
3,344,736	-				-1.7
3,344,738	+				-1.6
3,344,738	+				+0.4
3,344,738	+				-1.5
3,344,739	-				+1.4
3,344,739	-				-0.4
3,344,739	-				-0.7
3,344,744	+				+1.7
3,344,744	+				-1.6
3,344,744	+				-0.1
3,344,744	+				+0.1
3,344,744	+				+0.6
3,344,744	+				+1.1
3,344,745	-				-0.5
3,344,745	-				-0.9
3,344,747	+				+1.8
3,344,747	+				-0.4
3,344,747	+				+0.4
3,344,748	-				+1.7
3,344,748	-				-0.7
3,344,754	-				+0.3
3,344,754	-				-0.6
3,344,754	-				+0.4
3,344,756	+				-1.9
3,344,756	+				+0.4
3,344,756	+				+1.4
3,344,756	+				-1.1
3,344,757	-				+0.4
3,344,757	-				+0.6
3,344,757	-				+0.1
3,344,762	+				+1.2
3,344,763	-				+0.9
3,344,765	+				-0.3
3,344,766	-				-0.1
3,344,768	+				+1.8
3,344,768	+				+5.4
3,344,768	+				+0.3
3,344,768	+				-0.9
3,344,768	+				+0.2
3,344,768	+				-0.6
3,344,768	+				-0.4
3,344,768	+				-1.6
3,344,768	+				+0.2
3,344,768	+				+1.8
3,344,768	+				-0.0
3,344,769	-				-0.1
3,344,769	-				-1.0
3,344,769	-				-0.3
3,344,769	-				-2.0
3,344,769	-				-0.3
3,344,769	-				+0.6
3,344,962	+		DDA3937_RS14610	0.61	-0.7
3,344,977	-		DDA3937_RS14610	0.66	-0.1
3,344,977	-		DDA3937_RS14610	0.66	+0.0
3,344,977	-		DDA3937_RS14610	0.66	+1.4
3,345,052	+				-0.6
3,345,125	+				-1.9
3,345,150	-				-0.3
3,345,167	-				-1.0
3,345,167	-				+0.4
3,345,172	+				-0.1
3,345,173	-				-0.1
3,345,173	-				+0.3
3,345,173	-				-0.3
3,345,173	-				-0.9
3,345,180	-				+1.0
3,345,180	-				+0.5
3,345,180	-				+0.4
3,345,180	-				-0.1
3,345,198	-				-1.4
3,345,253	+				-1.4
3,345,312	+				-0.5
3,345,312	+				-0.0
3,345,313	-				-0.1
3,345,343	+				-0.4
3,345,350	-				-1.2
3,345,350	-				-0.9
3,345,352	-				+1.2
3,345,395	+				-0.3
3,345,396	-				-2.1
3,345,396	-				-0.1
3,345,414	+				+1.0
3,345,414	+				-0.5
3,345,477	+				+2.9
3,345,683	+		DDA3937_RS14615	0.18	-2.3
3,345,683	+		DDA3937_RS14615	0.18	-0.4
3,345,684	-				-0.1
3,345,689	-		DDA3937_RS14615	0.18	-2.0
3,345,749	-		DDA3937_RS14615	0.23	-1.1
3,345,772	+		DDA3937_RS14615	0.25	-1.1
3,345,933	-		DDA3937_RS14615	0.38	-1.4
3,346,060	+				+1.0
3,346,061	-				+2.0
3,346,309	+		DDA3937_RS14615	0.67	-1.0
3,346,309	+		DDA3937_RS14615	0.67	-3.1
3,346,309	+		DDA3937_RS14615	0.67	-0.1
3,346,319	+		DDA3937_RS14615	0.68	-2.1
3,346,433	+				+0.9
3,346,434	-		DDA3937_RS14615	0.77	-0.3
3,346,434	-		DDA3937_RS14615	0.77	+1.0
3,346,434	-		DDA3937_RS14615	0.77	-1.4
3,346,436	+		DDA3937_RS14615	0.77	-0.9
3,346,437	-		DDA3937_RS14615	0.77	+0.2
3,346,437	-		DDA3937_RS14615	0.77	-0.1
3,346,437	-		DDA3937_RS14615	0.77	-1.1
3,346,437	-		DDA3937_RS14615	0.77	-1.1
3,346,437	-		DDA3937_RS14615	0.77	-1.7
3,346,439	+				+1.4
3,346,440	-		DDA3937_RS14615	0.78	-0.9
3,346,440	-		DDA3937_RS14615	0.78	+0.1
3,346,440	-		DDA3937_RS14615	0.78	-1.8
3,346,440	-		DDA3937_RS14615	0.78	+0.9
3,346,560	-		DDA3937_RS14615	0.87	-2.6
3,346,560	-		DDA3937_RS14615	0.87	+0.1
3,346,560	-		DDA3937_RS14615	0.87	-1.7
3,346,560	-		DDA3937_RS14615	0.87	-1.7
3,346,560	-		DDA3937_RS14615	0.87	+0.1
3,346,601	+				+0.4
3,346,601	+				+0.2
3,346,601	+				-1.4
3,346,601	+				-0.1
3,346,601	+				-0.6
3,346,601	+				+0.4
3,346,602	-				-0.4
3,346,603	+				-2.0
3,346,603	+				+0.1
3,346,603	+				-0.6
3,346,603	+				-0.1
3,346,603	+				-0.1
3,346,604	-				+1.4
3,346,604	-				-1.4
3,346,604	-				-1.7
3,346,604	-				+2.6
3,346,604	-				-0.5
3,346,662	-				+1.8
3,346,669	+				-0.4
3,346,670	-				-1.8
3,346,670	-				-0.1
3,346,695	-				-0.7
3,346,712	+				+0.4
3,346,713	-				-1.9
3,346,736	-				+1.3
3,346,736	-				-1.7
3,346,748	-				+3.0
3,346,796	+				+0.6
3,346,831	+				+1.4
3,346,831	+				-0.3
3,346,831	+				-0.4
3,346,832	-				+2.4
3,346,851	-				-1.3
3,346,859	-				-1.2
3,346,909	+				+2.8
3,346,910	-				+0.7
3,346,910	-				-0.7
3,347,180	-		DDA3937_RS14620	0.24	-1.9
3,347,180	-				-0.1
3,347,282	+		DDA3937_RS14620	0.30	-0.3
3,347,282	+		DDA3937_RS14620	0.30	-0.3
3,347,283	-		DDA3937_RS14620	0.30	+2.6
3,347,283	-		DDA3937_RS14620	0.30	-0.0
3,347,283	-		DDA3937_RS14620	0.30	+3.4
3,347,396	+		DDA3937_RS14620	0.37	-1.3
3,347,448	-		DDA3937_RS14620	0.41	+0.7
3,347,452	+		DDA3937_RS14620	0.41	-1.0
3,347,453	-		DDA3937_RS14620	0.41	+0.7
3,347,454	+		DDA3937_RS14620	0.41	+0.1
3,347,454	+		DDA3937_RS14620	0.41	-1.4
3,347,455	-		DDA3937_RS14620	0.41	-2.0
3,347,455	-		DDA3937_RS14620	0.41	-0.9
3,347,476	-		DDA3937_RS14620	0.42	-1.2
3,347,476	-		DDA3937_RS14620	0.42	+1.2
3,347,530	+		DDA3937_RS14620	0.46	-1.2
3,347,530	+		DDA3937_RS14620	0.46	-1.3
3,347,530	+		DDA3937_RS14620	0.46	-1.1
3,347,530	+		DDA3937_RS14620	0.46	+1.1
3,347,531	-		DDA3937_RS14620	0.46	-0.2
3,347,531	-		DDA3937_RS14620	0.46	+1.1
3,347,550	-		DDA3937_RS14620	0.47	+0.4
3,347,606	+		DDA3937_RS14620	0.51	-2.6
3,347,606	+		DDA3937_RS14620	0.51	+0.3
3,347,607	-		DDA3937_RS14620	0.51	-0.2