Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS12840

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
2,924,415	+		DDA3937_RS12835	0.49	+1.6
2,924,438	+		DDA3937_RS12835	0.51	+0.5
2,924,438	+		DDA3937_RS12835	0.51	-0.6
2,924,439	-		DDA3937_RS12835	0.51	-1.3
2,924,493	-		DDA3937_RS12835	0.53	-0.4
2,924,493	-		DDA3937_RS12835	0.53	-1.4
2,924,493	-		DDA3937_RS12835	0.53	-1.0
2,924,524	+				-1.3
2,924,524	+		DDA3937_RS12835	0.55	-0.7
2,924,525	-		DDA3937_RS12835	0.55	-0.8
2,924,525	-		DDA3937_RS12835	0.55	-0.8
2,924,554	+		DDA3937_RS12835	0.57	-1.0
2,924,663	-		DDA3937_RS12835	0.62	-0.5
2,924,673	+				+1.3
2,924,673	+		DDA3937_RS12835	0.63	+0.9
2,924,674	-		DDA3937_RS12835	0.63	-0.1
2,924,674	-		DDA3937_RS12835	0.63	-0.9
2,924,674	-		DDA3937_RS12835	0.63	-0.1
2,924,740	+		DDA3937_RS12835	0.66	-1.3
2,924,741	-		DDA3937_RS12835	0.66	-0.9
2,924,741	-		DDA3937_RS12835	0.66	-0.0
2,924,749	+		DDA3937_RS12835	0.67	+2.9
2,924,770	+		DDA3937_RS12835	0.68	-0.6
2,924,770	+		DDA3937_RS12835	0.68	-0.5
2,924,770	+		DDA3937_RS12835	0.68	-2.2
2,924,770	+		DDA3937_RS12835	0.68	-0.3
2,924,771	-		DDA3937_RS12835	0.68	-1.7
2,925,093	+		DDA3937_RS12835	0.84	-0.7
2,925,093	+		DDA3937_RS12835	0.84	-0.7
2,925,093	+		DDA3937_RS12835	0.84	-0.6
2,925,094	-		DDA3937_RS12835	0.84	+0.0
2,925,105	+		DDA3937_RS12835	0.85	+0.6
2,925,105	+		DDA3937_RS12835	0.85	+1.6
2,925,210	+				+0.9
2,925,211	-				+0.3
2,925,211	-				+1.5
2,925,236	+				+0.7
2,925,236	+				-1.7
2,925,236	+				-1.9
2,925,320	-				+1.0
2,925,397	+				-1.0
2,925,397	+				-0.2
2,925,397	+				-0.4
2,925,397	+				-1.5
2,925,398	-				+0.5
2,925,398	-				-1.0
2,925,398	-				-0.1
2,925,398	-				+0.3
2,925,398	-				+2.3
2,925,398	-				+0.3
2,925,401	+				-0.1
2,925,401	+				-1.0
2,925,586	+				-0.4
2,925,588	+				-1.0
2,925,588	+				-1.0
2,925,589	-				-1.0
2,925,589	-				-0.8
2,925,803	+		DDA3937_RS12840	0.19	-1.5
2,925,804	-		DDA3937_RS12840	0.19	-0.7
2,925,804	-		DDA3937_RS12840	0.19	-2.4
2,925,816	+		DDA3937_RS12840	0.20	-1.2
2,925,816	+		DDA3937_RS12840	0.20	-1.2
2,925,816	+		DDA3937_RS12840	0.20	-0.5
2,925,817	-		DDA3937_RS12840	0.20	-1.2
2,925,817	-		DDA3937_RS12840	0.20	-0.3
2,925,817	-		DDA3937_RS12840	0.20	-2.2
2,925,817	-		DDA3937_RS12840	0.20	-1.3
2,925,878	+		DDA3937_RS12840	0.23	-0.3
2,925,879	-		DDA3937_RS12840	0.23	-1.2
2,925,972	-		DDA3937_RS12840	0.27	+0.7
2,926,236	+		DDA3937_RS12840	0.39	-1.5
2,926,236	+				+3.6
2,926,237	-		DDA3937_RS12840	0.39	-0.7
2,926,238	+		DDA3937_RS12840	0.39	-2.5
2,926,239	-		DDA3937_RS12840	0.40	+0.5
2,926,260	-		DDA3937_RS12840	0.40	-2.4
2,926,394	+		DDA3937_RS12840	0.47	-2.9
2,926,394	+		DDA3937_RS12840	0.47	-1.3
2,926,831	-		DDA3937_RS12840	0.67	+0.3
2,926,943	-				+1.5
2,927,107	-		DDA3937_RS12840	0.80	-0.5
2,927,107	-		DDA3937_RS12840	0.80	-0.3
2,927,107	-		DDA3937_RS12840	0.80	-2.5
2,927,306	+		DDA3937_RS12840	0.90	-0.3
2,927,307	-		DDA3937_RS12840	0.90	-1.8
2,927,307	-		DDA3937_RS12840	0.90	-0.9
2,927,307	-		DDA3937_RS12840	0.90	+0.4
2,927,307	-		DDA3937_RS12840	0.90	+2.5
2,927,307	-		DDA3937_RS12840	0.90	-0.7
2,927,325	-				-0.0
2,927,390	+				+2.7
2,927,390	+				-0.0
2,927,391	-				-2.0
2,927,392	+				+2.6
2,927,392	+				+0.4
2,927,393	-				-0.2
2,927,393	-				-0.0
2,927,393	-				-1.3
2,927,532	+				-1.0
2,927,532	+				+0.4
2,927,532	+				+2.0
2,927,533	-				-1.7
2,927,535	+				-0.3
2,927,535	+				-0.0
2,927,536	-				-1.3
2,927,540	+				-0.3
2,927,555	+				-0.7
2,927,555	+				+0.1
2,927,555	+				-0.5
2,927,555	+				-0.7
2,927,556	-				-1.9
2,927,558	+				+0.5
2,927,558	+				-0.4
2,927,559	-				+0.4
2,927,601	+				+0.6
2,927,646	-				-1.0
2,927,665	+				+0.0
2,927,665	+				-2.3
2,927,665	+				-0.3
2,927,665	+				-0.1
2,927,665	+				-0.9
2,927,667	+				-1.2
2,927,667	+				+3.0
2,927,667	+				+0.2
2,927,667	+				+1.7
2,927,667	+				-0.5
2,927,667	+				-0.1
2,927,667	+				+0.3
2,927,667	+				+1.1
2,927,667	+				-1.2
2,927,667	+				-0.2
2,927,668	-				+0.3
2,927,668	-				-0.7
2,927,668	-				+0.6
2,927,668	-				-0.4
2,927,668	-				-1.5
2,927,671	+				+1.1
2,927,671	+				+2.9
2,927,671	+				-2.4
2,927,671	+				-0.3
2,927,671	+				+0.8
2,927,671	+				-1.1
2,927,672	-				+0.1
2,927,672	-				+2.2
2,927,672	-				+0.5
2,927,672	-				+0.2
2,927,672	-				+1.3
2,927,672	-				-0.8
2,927,691	-				+1.7
2,927,705	-				-1.2
2,927,705	-				-2.2
2,927,705	-				-0.5
2,927,738	+				-0.3
2,927,738	+				+0.5
2,927,738	+				-2.0
2,927,739	-				-2.0
2,927,953	+		DDA3937_RS12845	0.20	-0.7
2,927,953	+		DDA3937_RS12845	0.20	-0.5
2,927,954	-		DDA3937_RS12845	0.20	-1.1
2,927,954	-		DDA3937_RS12845	0.20	+0.2
2,927,954	-		DDA3937_RS12845	0.20	+0.7
2,927,954	-		DDA3937_RS12845	0.20	-0.7
2,927,954	-		DDA3937_RS12845	0.20	-1.9
2,927,954	-		DDA3937_RS12845	0.20	-1.9
2,928,065	-		DDA3937_RS12845	0.31	+0.5
2,928,274	+		DDA3937_RS12845	0.49	-1.2
2,928,339	+		DDA3937_RS12845	0.55	-0.3
2,928,368	+		DDA3937_RS12845	0.58	-0.6
2,928,369	-		DDA3937_RS12845	0.58	-0.0
2,928,369	-		DDA3937_RS12845	0.58	-0.8
2,928,447	-		DDA3937_RS12845	0.65	-0.8
2,928,447	-		DDA3937_RS12845	0.65	+0.4
2,928,447	-		DDA3937_RS12845	0.65	+1.1