Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS09150

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
2,055,063	+		DDA3937_RS09140	0.78	-1.3
2,055,063	+		DDA3937_RS09140	0.78	+0.1
2,055,063	+		DDA3937_RS09140	0.78	-2.1
2,055,064	-		DDA3937_RS09140	0.79	-1.5
2,055,064	-		DDA3937_RS09140	0.79	-1.2
2,055,064	-		DDA3937_RS09140	0.79	-0.3
2,055,064	-		DDA3937_RS09140	0.79	+0.5
2,055,064	-		DDA3937_RS09140	0.79	+0.0
2,055,118	-		DDA3937_RS09140	0.83	-0.1
2,055,136	+		DDA3937_RS09140	0.84	-1.7
2,055,137	-		DDA3937_RS09140	0.85	+0.3
2,055,137	-		DDA3937_RS09140	0.85	-0.1
2,055,204	+				-1.5
2,055,204	+				+0.3
2,055,204	+				+1.9
2,055,204	+				+0.4
2,055,205	-				-1.5
2,055,205	-				-0.3
2,055,205	-				+0.2
2,055,250	-				-1.1
2,055,326	+				-0.1
2,055,327	-				-1.4
2,055,327	-				-1.9
2,055,327	-				-0.9
2,055,363	-				+0.4
2,055,438	-				+0.3
2,055,438	-				-0.1
2,055,457	+				-1.1
2,055,458	-				-2.4
2,056,016	-				+0.1
2,056,065	+				-1.3
2,056,065	+				-0.6
2,056,066	-				-1.2
2,056,066	-				+2.2
2,056,170	+		DDA3937_RS09150	0.11	-0.3
2,056,170	+		DDA3937_RS09150	0.11	+1.3
2,056,170	+		DDA3937_RS09150	0.11	-0.3
2,056,171	-		DDA3937_RS09150	0.11	+0.7
2,056,178	+		DDA3937_RS09150	0.11	+1.3
2,056,178	+		DDA3937_RS09150	0.11	-0.7
2,056,179	-		DDA3937_RS09150	0.11	+0.0
2,056,250	-		DDA3937_RS09150	0.15	-0.9
2,056,516	+		DDA3937_RS09150	0.30	+0.1
2,056,517	-		DDA3937_RS09150	0.31	-2.1
2,056,517	-		DDA3937_RS09150	0.31	+0.3
2,056,646	-		DDA3937_RS09150	0.38	+2.2
2,056,735	+		DDA3937_RS09150	0.43	+0.0
2,056,865	+		DDA3937_RS09150	0.50	+0.2
2,056,865	+		DDA3937_RS09150	0.50	+0.1
2,056,865	+		DDA3937_RS09150	0.50	-0.6
2,056,866	-		DDA3937_RS09150	0.50	+0.5
2,056,866	-		DDA3937_RS09150	0.50	+1.3
2,056,866	-		DDA3937_RS09150	0.50	-1.1
2,056,866	-		DDA3937_RS09150	0.50	-1.6
2,056,866	-		DDA3937_RS09150	0.50	-0.9
2,056,994	-		DDA3937_RS09150	0.57	+0.4
2,057,125	+		DDA3937_RS09150	0.65	+1.3
2,057,126	-		DDA3937_RS09150	0.65	-0.1
2,057,183	+		DDA3937_RS09150	0.68	-1.7
2,057,184	-		DDA3937_RS09150	0.68	+0.7
2,057,185	+		DDA3937_RS09150	0.68	-0.1
2,057,185	+		DDA3937_RS09150	0.68	+1.5
2,057,186	-		DDA3937_RS09150	0.68	-0.3
2,057,186	-		DDA3937_RS09150	0.68	+0.4
2,057,186	-		DDA3937_RS09150	0.68	-0.3
2,057,186	-		DDA3937_RS09150	0.68	-1.2
2,057,186	-		DDA3937_RS09150	0.68	+1.3
2,057,186	-		DDA3937_RS09150	0.68	-1.5
2,057,203	+		DDA3937_RS09150	0.69	-1.1
2,057,204	-		DDA3937_RS09150	0.69	-0.5
2,057,260	+		DDA3937_RS09150	0.72	-0.1
2,057,266	+		DDA3937_RS09150	0.73	-0.3
2,057,267	-		DDA3937_RS09150	0.73	-0.3
2,057,267	-		DDA3937_RS09150	0.73	+0.9
2,057,363	-		DDA3937_RS09150	0.78	+2.5
2,057,363	-		DDA3937_RS09150	0.78	+1.0
2,057,475	+		DDA3937_RS09150	0.84	+1.5
2,057,476	-		DDA3937_RS09150	0.85	+1.7
2,057,476	-		DDA3937_RS09150	0.85	-0.9
2,057,545	+		DDA3937_RS09150	0.88	-2.2
2,057,546	-		DDA3937_RS09150	0.88	-0.7
2,057,546	-		DDA3937_RS09150	0.88	-0.2
2,057,741	+				+3.0
2,057,741	+				+1.7
2,057,741	+				-0.8
2,057,742	-				+0.0
2,057,742	-				-2.2
2,057,742	-				+1.0
2,057,782	+		DDA3937_RS09155	0.13	-1.9
2,057,782	+		DDA3937_RS09155	0.13	+0.2
2,057,783	-		DDA3937_RS09155	0.14	-0.5
2,057,870	-		DDA3937_RS09155	0.50	+1.8
2,057,929	+		DDA3937_RS09155	0.75	-0.4
2,057,929	+		DDA3937_RS09155	0.75	+1.3
2,057,956	+		DDA3937_RS09155	0.86	+1.7
2,057,956	+		DDA3937_RS09155	0.86	-0.1
2,057,956	+		DDA3937_RS09155	0.86	-1.0
2,057,956	+		DDA3937_RS09155	0.86	-2.7
2,057,956	+		DDA3937_RS09155	0.86	+0.0
2,057,956	+		DDA3937_RS09155	0.86	+0.9
2,057,956	+		DDA3937_RS09155	0.86	-0.8
2,057,956	+		DDA3937_RS09155	0.86	+0.1
2,057,956	+		DDA3937_RS09155	0.86	+0.2
2,057,956	+		DDA3937_RS09155	0.86	-1.1
2,057,956	+		DDA3937_RS09155	0.86	-0.7
2,057,956	+		DDA3937_RS09155	0.86	+1.6
2,057,956	+		DDA3937_RS09155	0.86	+0.4
2,057,956	+		DDA3937_RS09155	0.86	-0.6
2,057,956	+		DDA3937_RS09155	0.86	-2.4
2,057,957	-		DDA3937_RS09155	0.86	-1.1
2,057,957	-		DDA3937_RS09155	0.86	-1.8
2,057,957	-		DDA3937_RS09155	0.86	+0.9
2,057,957	-		DDA3937_RS09155	0.86	-0.5
2,057,957	-		DDA3937_RS09155	0.86	-0.6
2,057,957	-		DDA3937_RS09155	0.86	+1.1
2,057,957	-		DDA3937_RS09155	0.86	-1.2
2,057,957	-		DDA3937_RS09155	0.86	-0.4
2,057,957	-		DDA3937_RS09155	0.86	+0.6
2,057,957	-		DDA3937_RS09155	0.86	-2.9
2,057,957	-		DDA3937_RS09155	0.86	-2.4
2,057,957	-		DDA3937_RS09155	0.86	-1.5
2,057,957	-		DDA3937_RS09155	0.86	-0.1
2,057,957	-		DDA3937_RS09155	0.86	-1.3
2,057,957	-		DDA3937_RS09155	0.86	-0.1
2,057,960	+		DDA3937_RS09155	0.88	-1.3
2,057,960	+		DDA3937_RS09155	0.88	+1.6
2,057,960	+		DDA3937_RS09155	0.88	-1.7
2,057,960	+		DDA3937_RS09155	0.88	-1.1
2,057,961	-		DDA3937_RS09155	0.88	-1.3
2,057,961	-		DDA3937_RS09155	0.88	-0.4
2,057,961	-		DDA3937_RS09155	0.88	-0.5
2,057,961	-		DDA3937_RS09155	0.88	-1.3
2,057,961	-		DDA3937_RS09155	0.88	-0.5
2,057,961	-		DDA3937_RS09155	0.88	-1.1
2,057,961	-		DDA3937_RS09155	0.88	-0.3
2,057,961	-		DDA3937_RS09155	0.88	-1.5
2,057,963	+		DDA3937_RS09155	0.89	-0.9
2,057,963	+		DDA3937_RS09155	0.89	+0.5
2,057,963	+		DDA3937_RS09155	0.89	-2.8
2,057,963	+		DDA3937_RS09155	0.89	-0.2
2,057,964	-		DDA3937_RS09155	0.89	-2.1
2,057,964	-		DDA3937_RS09155	0.89	+0.3
2,057,964	-		DDA3937_RS09155	0.89	-2.2
2,057,964	-		DDA3937_RS09155	0.89	+3.3
2,057,989	+				-0.0
2,057,989	+				-1.3
2,057,989	+				-1.1
2,057,989	+				-1.5
2,057,989	+				-1.2
2,057,990	-				+1.3
2,057,990	-				+1.3
2,057,990	-				+1.3
2,057,990	-				-0.5
2,057,990	-				-1.6
2,057,990	-				+0.8
2,057,990	-				-1.4
2,057,990	-				+0.6
2,057,990	-				-1.0
2,057,990	-				-0.8
2,057,990	-				+0.4
2,057,990	-				+0.8
2,057,990	-				-0.3
2,057,990	-				+0.4
2,057,990	-				+2.6
2,057,990	-				+0.2
2,057,992	+				-2.4
2,058,004	+				+0.9
2,058,009	-				+2.5
2,058,009	-				+0.4
2,058,117	+				+0.2
2,058,117	+				-0.1
2,058,153	+				+0.2
2,058,153	+				-2.4
2,058,153	+				-1.1
2,058,153	+				+0.5
2,058,154	-				-0.1
2,058,154	-				-1.3
2,058,190	+				-0.6
2,058,191	-				-0.7
2,058,191	-				-0.9
2,058,239	+				+1.3
2,058,239	+				-0.0
2,058,246	+				-0.7
2,058,355	+				-0.3
2,058,452	+		DDA3937_RS09160	0.28	+0.7
2,058,453	-		DDA3937_RS09160	0.28	+2.8
2,058,453	-		DDA3937_RS09160	0.28	-0.3
2,058,465	+				+1.3
2,058,465	+		DDA3937_RS09160	0.30	+0.5
2,058,465	+		DDA3937_RS09160	0.30	+0.9
2,058,466	-		DDA3937_RS09160	0.30	-0.2
2,058,507	+		DDA3937_RS09160	0.36	-1.1
2,058,507	+		DDA3937_RS09160	0.36	-0.2
2,058,580	+		DDA3937_RS09160	0.46	-0.6
2,058,617	+		DDA3937_RS09160	0.52	+1.2
2,058,648	+		DDA3937_RS09160	0.56	-0.7
2,058,648	+		DDA3937_RS09160	0.56	-1.6
2,058,649	-		DDA3937_RS09160	0.56	-0.7
2,058,715	+		DDA3937_RS09160	0.66	-0.2
2,058,715	+		DDA3937_RS09160	0.66	+0.5
2,058,715	+		DDA3937_RS09160	0.66	+0.3
2,058,715	+		DDA3937_RS09160	0.66	-1.1