Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS09140

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
2,053,126	-				-1.7
2,053,307	+		DDA3937_RS09135	0.16	+0.1
2,053,406	-				-1.5
2,053,433	+		DDA3937_RS09135	0.33	+0.1
2,053,433	+		DDA3937_RS09135	0.33	-1.3
2,053,478	+		DDA3937_RS09135	0.40	-0.5
2,053,478	+		DDA3937_RS09135	0.40	-0.6
2,053,478	+		DDA3937_RS09135	0.40	-3.3
2,053,478	+		DDA3937_RS09135	0.40	+1.1
2,053,479	-		DDA3937_RS09135	0.40	-0.3
2,053,479	-		DDA3937_RS09135	0.40	-0.4
2,053,479	-		DDA3937_RS09135	0.40	-0.1
2,053,479	-		DDA3937_RS09135	0.40	-0.1
2,053,479	-		DDA3937_RS09135	0.40	+0.7
2,053,479	-		DDA3937_RS09135	0.40	-0.3
2,053,480	+		DDA3937_RS09135	0.40	-0.1
2,053,480	+		DDA3937_RS09135	0.40	+0.9
2,053,480	+		DDA3937_RS09135	0.40	-0.3
2,053,481	-		DDA3937_RS09135	0.40	-0.5
2,053,481	-		DDA3937_RS09135	0.40	-0.2
2,053,481	-		DDA3937_RS09135	0.40	-0.1
2,053,494	-		DDA3937_RS09135	0.42	-0.5
2,053,561	+		DDA3937_RS09135	0.51	-0.1
2,053,613	-		DDA3937_RS09135	0.58	+0.0
2,053,618	+		DDA3937_RS09135	0.59	-1.1
2,053,627	+		DDA3937_RS09135	0.60	+0.7
2,053,639	+		DDA3937_RS09135	0.61	-0.1
2,053,648	+		DDA3937_RS09135	0.63	-0.9
2,053,652	+		DDA3937_RS09135	0.63	+0.6
2,053,652	+		DDA3937_RS09135	0.63	-1.4
2,053,652	+		DDA3937_RS09135	0.63	+1.3
2,053,652	+		DDA3937_RS09135	0.63	-1.5
2,053,652	+		DDA3937_RS09135	0.63	+0.0
2,053,653	-		DDA3937_RS09135	0.63	+0.0
2,053,653	-		DDA3937_RS09135	0.63	+0.2
2,053,653	-		DDA3937_RS09135	0.63	-0.3
2,053,653	-		DDA3937_RS09135	0.63	+0.7
2,053,653	-		DDA3937_RS09135	0.63	-0.5
2,053,653	-		DDA3937_RS09135	0.63	+0.7
2,053,653	-		DDA3937_RS09135	0.63	-0.2
2,053,653	-		DDA3937_RS09135	0.63	-2.9
2,053,653	-		DDA3937_RS09135	0.63	+0.8
2,053,656	-		DDA3937_RS09135	0.64	-0.1
2,053,688	+		DDA3937_RS09135	0.68	-0.7
2,053,689	-		DDA3937_RS09135	0.68	+0.7
2,053,757	+		DDA3937_RS09135	0.78	-0.7
2,053,781	+				+2.9
2,053,782	-		DDA3937_RS09135	0.81	-0.1
2,053,825	+		DDA3937_RS09135	0.87	-1.5
2,053,835	+		DDA3937_RS09135	0.88	-1.5
2,053,835	+		DDA3937_RS09135	0.88	+0.2
2,053,835	+		DDA3937_RS09135	0.88	+1.3
2,053,835	+		DDA3937_RS09135	0.88	-0.6
2,053,835	+		DDA3937_RS09135	0.88	-1.3
2,053,835	+		DDA3937_RS09135	0.88	-1.5
2,053,835	+		DDA3937_RS09135	0.88	-1.7
2,053,835	+		DDA3937_RS09135	0.88	-0.6
2,053,836	-		DDA3937_RS09135	0.88	+0.3
2,053,836	-		DDA3937_RS09135	0.88	-0.7
2,053,836	-		DDA3937_RS09135	0.88	-1.1
2,053,836	-		DDA3937_RS09135	0.88	-0.3
2,053,836	-		DDA3937_RS09135	0.88	-1.3
2,053,836	-		DDA3937_RS09135	0.88	-2.6
2,053,836	-		DDA3937_RS09135	0.88	+0.0
2,053,836	-		DDA3937_RS09135	0.88	-0.7
2,053,837	+		DDA3937_RS09135	0.88	-0.2
2,053,838	-		DDA3937_RS09135	0.89	+0.1
2,053,920	-				-0.3
2,053,920	-				+0.0
2,053,925	+				-0.3
2,053,925	+				+1.3
2,053,926	-				-1.1
2,053,926	-				+0.4
2,053,926	-				-1.9
2,053,926	-				-0.6
2,053,929	+				-0.6
2,053,929	+				+0.7
2,053,929	+				+0.9
2,053,930	-				-2.5
2,053,930	-				+0.1
2,053,947	+				+0.8
2,053,948	-				-0.1
2,053,948	-				-1.4
2,053,948	-				-1.7
2,054,015	-				-1.4
2,054,039	+				-1.4
2,054,040	-				-0.9
2,054,040	-				-0.7
2,054,041	+				-0.2
2,054,042	-				-0.1
2,054,136	+				+0.7
2,054,136	+				+0.9
2,054,139	+				-0.2
2,054,139	+				+0.1
2,054,139	+				+0.9
2,054,139	+				-2.3
2,054,140	-				-1.3
2,054,178	+				-1.7
2,054,179	-				-1.4
2,054,182	+				-0.2
2,054,182	+				-1.1
2,054,182	+				-2.1
2,054,182	+				-1.1
2,054,182	+				-0.7
2,054,183	-				-1.1
2,054,183	-				-0.5
2,054,183	-				+0.3
2,054,197	+				-1.0
2,054,197	+				+1.0
2,054,198	-				+0.1
2,054,198	-				-0.1
2,054,261	+		DDA3937_RS09140	0.13	-0.1
2,054,304	+		DDA3937_RS09140	0.16	+1.7
2,054,383	-		DDA3937_RS09140	0.23	+0.9
2,054,383	-		DDA3937_RS09140	0.23	+0.4
2,054,452	+		DDA3937_RS09140	0.28	+0.7
2,054,452	+		DDA3937_RS09140	0.28	+0.7
2,054,452	+		DDA3937_RS09140	0.28	-1.5
2,054,452	+		DDA3937_RS09140	0.28	+0.7
2,054,453	-				+1.3
2,054,453	-		DDA3937_RS09140	0.28	-0.3
2,054,453	-		DDA3937_RS09140	0.28	+0.1
2,054,460	+		DDA3937_RS09140	0.29	-0.8
2,054,460	+		DDA3937_RS09140	0.29	+0.7
2,054,460	+		DDA3937_RS09140	0.29	-1.1
2,054,460	+		DDA3937_RS09140	0.29	+2.3
2,054,460	+		DDA3937_RS09140	0.29	-1.5
2,054,460	+				+3.1
2,054,460	+		DDA3937_RS09140	0.29	-0.3
2,054,460	+		DDA3937_RS09140	0.29	+2.3
2,054,460	+		DDA3937_RS09140	0.29	-1.5
2,054,460	+		DDA3937_RS09140	0.29	+0.6
2,054,460	+		DDA3937_RS09140	0.29	+0.5
2,054,461	-		DDA3937_RS09140	0.29	-0.4
2,054,461	-		DDA3937_RS09140	0.29	+1.9
2,054,461	-		DDA3937_RS09140	0.29	-0.4
2,054,461	-		DDA3937_RS09140	0.29	+0.4
2,054,461	-		DDA3937_RS09140	0.29	-0.1
2,054,461	-		DDA3937_RS09140	0.29	-1.2
2,054,461	-		DDA3937_RS09140	0.29	+1.2
2,054,461	-		DDA3937_RS09140	0.29	-1.3
2,054,461	-		DDA3937_RS09140	0.29	-1.0
2,054,478	+		DDA3937_RS09140	0.30	-1.3
2,054,479	-				+2.3
2,054,479	-		DDA3937_RS09140	0.31	+0.3
2,054,479	-		DDA3937_RS09140	0.31	-3.4
2,054,557	+		DDA3937_RS09140	0.37	-0.4
2,054,557	+		DDA3937_RS09140	0.37	+1.8
2,054,557	+		DDA3937_RS09140	0.37	-0.7
2,054,557	+		DDA3937_RS09140	0.37	+0.7
2,054,557	+		DDA3937_RS09140	0.37	+1.3
2,054,558	-		DDA3937_RS09140	0.37	+1.1
2,054,558	-		DDA3937_RS09140	0.37	-1.1
2,054,673	-		DDA3937_RS09140	0.46	-0.7
2,054,740	-		DDA3937_RS09140	0.52	-1.3
2,054,914	+		DDA3937_RS09140	0.66	+0.5
2,054,915	-		DDA3937_RS09140	0.66	-1.0
2,055,063	+		DDA3937_RS09140	0.78	-1.3
2,055,063	+		DDA3937_RS09140	0.78	+0.1
2,055,063	+		DDA3937_RS09140	0.78	-2.1
2,055,064	-		DDA3937_RS09140	0.79	-1.5
2,055,064	-		DDA3937_RS09140	0.79	-1.2
2,055,064	-		DDA3937_RS09140	0.79	-0.3
2,055,064	-		DDA3937_RS09140	0.79	+0.5
2,055,064	-		DDA3937_RS09140	0.79	+0.0
2,055,118	-		DDA3937_RS09140	0.83	-0.1
2,055,136	+		DDA3937_RS09140	0.84	-1.7
2,055,137	-		DDA3937_RS09140	0.85	+0.3
2,055,137	-		DDA3937_RS09140	0.85	-0.1
2,055,204	+				-1.5
2,055,204	+				+0.3
2,055,204	+				+1.9
2,055,204	+				+0.4
2,055,205	-				-1.5
2,055,205	-				-0.3
2,055,205	-				+0.2
2,055,250	-				-1.1
2,055,326	+				-0.1
2,055,327	-				-1.4
2,055,327	-				-1.9
2,055,327	-				-0.9
2,055,363	-				+0.4
2,055,438	-				+0.3
2,055,438	-				-0.1
2,055,457	+				-1.1
2,055,458	-				-2.4
2,056,016	-				+0.1
2,056,065	+				-1.3
2,056,065	+				-0.6
2,056,066	-				-1.2
2,056,066	-				+2.2
2,056,170	+		DDA3937_RS09150	0.11	-0.3
2,056,170	+		DDA3937_RS09150	0.11	+1.3
2,056,170	+		DDA3937_RS09150	0.11	-0.3
2,056,171	-		DDA3937_RS09150	0.11	+0.7
2,056,178	+		DDA3937_RS09150	0.11	+1.3
2,056,178	+		DDA3937_RS09150	0.11	-0.7
2,056,179	-		DDA3937_RS09150	0.11	+0.0
2,056,250	-		DDA3937_RS09150	0.15	-0.9