Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS08690

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
1,961,023	+				+0.6
1,961,023	+				+2.3
1,961,023	+				-1.7
1,961,023	+				-2.3
1,961,023	+				-1.1
1,961,023	+				+0.8
1,961,024	-				+0.5
1,961,089	+		DDA3937_RS08685	0.11	+3.8
1,961,090	-				+2.6
1,961,090	-		DDA3937_RS08685	0.12	+0.9
1,961,231	+		DDA3937_RS08685	0.29	-1.3
1,961,231	+		DDA3937_RS08685	0.29	-1.9
1,961,232	-		DDA3937_RS08685	0.29	-1.0
1,961,317	-		DDA3937_RS08685	0.40	-0.8
1,961,345	+		DDA3937_RS08685	0.43	-3.2
1,961,345	+		DDA3937_RS08685	0.43	-0.7
1,961,345	+		DDA3937_RS08685	0.43	+0.5
1,961,346	-		DDA3937_RS08685	0.44	-0.8
1,961,359	+		DDA3937_RS08685	0.45	+0.7
1,961,359	+		DDA3937_RS08685	0.45	+0.8
1,961,360	-		DDA3937_RS08685	0.45	-0.6
1,961,360	-		DDA3937_RS08685	0.45	-0.0
1,961,364	+		DDA3937_RS08685	0.46	-1.8
1,961,364	+		DDA3937_RS08685	0.46	-1.3
1,961,365	-		DDA3937_RS08685	0.46	+1.1
1,961,366	+		DDA3937_RS08685	0.46	-0.7
1,961,366	+		DDA3937_RS08685	0.46	+0.9
1,961,367	-		DDA3937_RS08685	0.46	-0.5
1,961,367	-		DDA3937_RS08685	0.46	-0.3
1,961,367	-		DDA3937_RS08685	0.46	-2.0
1,961,457	-		DDA3937_RS08685	0.57	+0.1
1,961,496	+		DDA3937_RS08685	0.62	+0.3
1,961,576	-		DDA3937_RS08685	0.72	+0.3
1,961,586	-		DDA3937_RS08685	0.74	-0.8
1,961,646	-		DDA3937_RS08685	0.81	+0.3
1,961,681	+		DDA3937_RS08685	0.85	-1.2
1,961,682	-		DDA3937_RS08685	0.86	-2.1
1,961,834	-				+0.7
1,961,859	+				+0.2
1,961,888	+				-3.7
1,961,888	+				-0.3
1,961,888	+				-1.5
1,961,888	+				+1.6
1,961,888	+				-1.3
1,961,889	-				+0.5
1,961,889	-				+0.5
1,961,889	-				-1.0
1,961,889	-				-1.5
1,961,891	+				-1.2
1,961,891	+				-2.0
1,961,891	+				+0.2
1,961,891	+				+1.0
1,961,891	+				-0.8
1,961,892	-				-1.9
1,961,908	-				-0.4
1,961,908	-				+0.5
1,961,914	+				+0.4
1,961,915	-				-0.1
1,961,915	-				-1.3
1,961,923	+				-1.1
1,961,937	-				-1.0
1,961,937	-				+0.3
1,961,937	-				-0.7
1,961,985	+				-1.3
1,961,986	-				+1.3
1,961,994	+				-0.7
1,961,994	+				-0.1
1,961,994	+				-0.2
1,961,994	+				+0.3
1,961,995	-				-1.5
1,961,995	-				-0.7
1,961,995	-				+0.4
1,961,995	-				+0.3
1,962,025	+				+0.1
1,962,026	-				-1.3
1,962,026	-				-0.0
1,962,027	+				+1.1
1,962,027	+				+0.1
1,962,027	+				-1.7
1,962,027	+				+1.3
1,962,027	+				-2.0
1,962,028	-				-0.9
1,962,028	-				-0.1
1,962,028	-				-1.9
1,962,028	-				+2.7
1,962,028	-				-0.1
1,962,028	-				+0.4
1,962,028	-				-2.3
1,962,028	-				-1.9
1,962,028	-				-2.9
1,962,031	+				-1.9
1,962,031	+				+0.5
1,962,031	+				-3.2
1,962,032	-				+0.3
1,962,032	-				+1.1
1,962,130	+		DDA3937_RS08690	0.14	-0.9
1,962,130	+		DDA3937_RS08690	0.14	-1.5
1,962,130	+		DDA3937_RS08690	0.14	+0.3
1,962,136	+		DDA3937_RS08690	0.15	-0.3
1,962,136	+		DDA3937_RS08690	0.15	-1.7
1,962,136	+		DDA3937_RS08690	0.15	-0.0
1,962,136	+		DDA3937_RS08690	0.15	+0.5
1,962,136	+		DDA3937_RS08690	0.15	+0.3
1,962,137	-		DDA3937_RS08690	0.15	+0.3
1,962,137	-		DDA3937_RS08690	0.15	-0.5
1,962,137	-		DDA3937_RS08690	0.15	-0.8
1,962,137	-				+0.3
1,962,137	-		DDA3937_RS08690	0.15	-0.3
1,962,137	-		DDA3937_RS08690	0.15	-2.3
1,962,179	+		DDA3937_RS08690	0.21	-2.3
1,962,180	-		DDA3937_RS08690	0.21	-0.3
1,962,281	+		DDA3937_RS08690	0.34	+0.3
1,962,322	+		DDA3937_RS08690	0.39	-0.0
1,962,322	+		DDA3937_RS08690	0.39	+0.3
1,962,323	-		DDA3937_RS08690	0.40	-0.7
1,962,338	+		DDA3937_RS08690	0.42	+0.1
1,962,338	+		DDA3937_RS08690	0.42	-1.7
1,962,338	+		DDA3937_RS08690	0.42	-0.4
1,962,339	-		DDA3937_RS08690	0.42	+0.7
1,962,339	-		DDA3937_RS08690	0.42	+0.9
1,962,339	-		DDA3937_RS08690	0.42	+0.4
1,962,339	-		DDA3937_RS08690	0.42	-1.7
1,962,339	-		DDA3937_RS08690	0.42	-0.7
1,962,543	+		DDA3937_RS08690	0.68	-2.0
1,962,544	-		DDA3937_RS08690	0.68	-0.4
1,962,544	-		DDA3937_RS08690	0.68	-2.5
1,962,572	-		DDA3937_RS08690	0.72	+0.5
1,962,601	-		DDA3937_RS08690	0.76	-1.5
1,962,674	+		DDA3937_RS08690	0.85	-1.9
1,962,675	-		DDA3937_RS08690	0.86	+0.6
1,962,766	+				+0.9
1,962,767	-				-0.9
1,962,783	-				-0.1
1,962,800	+				-1.2
1,962,801	-				-1.3
1,962,801	-				-1.2
1,962,801	-				+0.9
1,962,801	-				+0.3
1,962,801	-				+2.0
1,962,812	+				-1.3
1,962,843	+				-0.3
1,962,855	+				-0.7
1,962,856	-				-1.4
1,962,973	+		DDA3937_RS08695	0.13	-0.3
1,962,974	-		DDA3937_RS08695	0.13	+0.8
1,962,976	-		DDA3937_RS08695	0.14	-1.8
1,962,976	-		DDA3937_RS08695	0.14	+0.6
1,962,976	-		DDA3937_RS08695	0.14	+1.0
1,962,983	-		DDA3937_RS08695	0.14	-3.3
1,963,096	+		DDA3937_RS08695	0.26	+0.8
1,963,096	+				+1.3
1,963,096	+		DDA3937_RS08695	0.26	+0.9
1,963,096	+		DDA3937_RS08695	0.26	-0.6
1,963,096	+		DDA3937_RS08695	0.26	-1.3
1,963,100	-		DDA3937_RS08695	0.27	-2.7
1,963,100	-		DDA3937_RS08695	0.27	-0.3
1,963,100	-		DDA3937_RS08695	0.27	+1.4
1,963,165	-		DDA3937_RS08695	0.33	-0.9
1,963,165	-		DDA3937_RS08695	0.33	-0.6
1,963,374	-		DDA3937_RS08695	0.55	-0.4
1,963,440	+		DDA3937_RS08695	0.62	+0.5
1,963,492	-				-1.3
1,963,492	-		DDA3937_RS08695	0.67	+0.3
1,963,663	+		DDA3937_RS08695	0.85	-0.8
1,963,696	+		DDA3937_RS08695	0.88	-0.1
1,963,696	+		DDA3937_RS08695	0.88	-0.5
1,963,716	+				-0.2