Experiment: Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS08490 and DDA3937_RS08495 overlap by 1 nucleotides DDA3937_RS08495 and DDA3937_RS08500 are separated by 146 nucleotides DDA3937_RS08500 and DDA3937_RS08505 are separated by 777 nucleotides
DDA3937_RS08490: DDA3937_RS08490 - CidB/LrgB family autolysis modulator, at 1,918,668 to 1,919,366
_RS08490
DDA3937_RS08495: DDA3937_RS08495 - CidA/LrgA family protein, at 1,919,366 to 1,919,776
_RS08495
DDA3937_RS08500: DDA3937_RS08500 - glycoside hydrolase family 3 protein, at 1,919,923 to 1,921,899
_RS08500
DDA3937_RS08505: DDA3937_RS08505 - adenosylmethionine--8-amino-7-oxononanoate transaminase, at 1,922,677 to 1,923,960
_RS08505
Position (kb) 1919
1920
1921
1922 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 1919.134 kb on + strand, within DDA3937_RS08490 at 1919.134 kb on + strand, within DDA3937_RS08490 at 1919.134 kb on + strand, within DDA3937_RS08490 at 1919.134 kb on + strand, within DDA3937_RS08490 at 1919.134 kb on + strand, within DDA3937_RS08490 at 1919.134 kb on + strand, within DDA3937_RS08490 at 1919.134 kb on + strand, within DDA3937_RS08490 at 1919.135 kb on - strand, within DDA3937_RS08490 at 1919.135 kb on - strand, within DDA3937_RS08490 at 1919.136 kb on + strand, within DDA3937_RS08490 at 1919.136 kb on + strand, within DDA3937_RS08490 at 1919.136 kb on + strand, within DDA3937_RS08490 at 1919.137 kb on - strand, within DDA3937_RS08490 at 1919.137 kb on - strand, within DDA3937_RS08490 at 1919.137 kb on - strand, within DDA3937_RS08490 at 1919.212 kb on + strand, within DDA3937_RS08490 at 1919.356 kb on + strand at 1919.357 kb on - strand at 1919.357 kb on - strand at 1919.357 kb on - strand at 1919.368 kb on - strand at 1919.437 kb on + strand, within DDA3937_RS08495 at 1919.438 kb on - strand, within DDA3937_RS08495 at 1919.438 kb on - strand, within DDA3937_RS08495 at 1919.438 kb on - strand, within DDA3937_RS08495 at 1919.440 kb on - strand, within DDA3937_RS08495 at 1919.440 kb on - strand, within DDA3937_RS08495 at 1919.520 kb on + strand, within DDA3937_RS08495 at 1919.520 kb on + strand, within DDA3937_RS08495 at 1919.521 kb on - strand, within DDA3937_RS08495 at 1919.521 kb on - strand, within DDA3937_RS08495 at 1919.521 kb on - strand, within DDA3937_RS08495 at 1919.521 kb on - strand, within DDA3937_RS08495 at 1919.521 kb on - strand, within DDA3937_RS08495 at 1919.523 kb on + strand, within DDA3937_RS08495 at 1919.523 kb on + strand, within DDA3937_RS08495 at 1919.523 kb on + strand, within DDA3937_RS08495 at 1919.523 kb on + strand, within DDA3937_RS08495 at 1919.523 kb on + strand, within DDA3937_RS08495 at 1919.523 kb on + strand, within DDA3937_RS08495 at 1919.523 kb on + strand, within DDA3937_RS08495 at 1919.524 kb on - strand, within DDA3937_RS08495 at 1919.524 kb on - strand, within DDA3937_RS08495 at 1919.524 kb on - strand, within DDA3937_RS08495 at 1919.524 kb on - strand, within DDA3937_RS08495 at 1919.524 kb on - strand, within DDA3937_RS08495 at 1919.524 kb on - strand, within DDA3937_RS08495 at 1919.524 kb on - strand, within DDA3937_RS08495 at 1919.524 kb on - strand, within DDA3937_RS08495 at 1919.685 kb on - strand, within DDA3937_RS08495 at 1919.721 kb on + strand, within DDA3937_RS08495 at 1919.721 kb on + strand, within DDA3937_RS08495 at 1919.722 kb on - strand, within DDA3937_RS08495 at 1919.722 kb on - strand, within DDA3937_RS08495 at 1919.746 kb on - strand at 1919.746 kb on - strand at 1919.746 kb on - strand at 1919.746 kb on - strand at 1919.746 kb on - strand at 1919.746 kb on - strand at 1919.767 kb on + strand at 1919.767 kb on + strand at 1919.768 kb on - strand at 1919.770 kb on + strand at 1919.770 kb on + strand at 1919.770 kb on + strand at 1919.770 kb on + strand at 1919.771 kb on - strand at 1919.771 kb on - strand at 1919.777 kb on - strand at 1919.816 kb on + strand at 1919.819 kb on + strand at 1919.819 kb on + strand at 1919.819 kb on + strand at 1919.819 kb on + strand at 1919.820 kb on - strand at 1919.962 kb on - strand at 1919.973 kb on - strand at 1920.044 kb on + strand at 1920.044 kb on + strand at 1920.044 kb on + strand at 1920.045 kb on - strand at 1920.156 kb on + strand, within DDA3937_RS08500 at 1920.157 kb on - strand, within DDA3937_RS08500 at 1920.158 kb on + strand, within DDA3937_RS08500 at 1920.158 kb on + strand, within DDA3937_RS08500 at 1920.159 kb on - strand, within DDA3937_RS08500 at 1920.159 kb on - strand, within DDA3937_RS08500 at 1920.159 kb on - strand, within DDA3937_RS08500 at 1920.159 kb on - strand, within DDA3937_RS08500 at 1920.209 kb on + strand, within DDA3937_RS08500 at 1920.209 kb on + strand, within DDA3937_RS08500 at 1920.210 kb on - strand, within DDA3937_RS08500 at 1920.442 kb on + strand, within DDA3937_RS08500 at 1920.442 kb on + strand, within DDA3937_RS08500 at 1920.443 kb on - strand, within DDA3937_RS08500 at 1920.528 kb on - strand, within DDA3937_RS08500 at 1920.570 kb on + strand, within DDA3937_RS08500 at 1920.570 kb on + strand at 1920.585 kb on + strand, within DDA3937_RS08500 at 1920.650 kb on - strand, within DDA3937_RS08500 at 1920.837 kb on - strand, within DDA3937_RS08500 at 1920.935 kb on + strand, within DDA3937_RS08500 at 1920.935 kb on + strand, within DDA3937_RS08500 at 1920.935 kb on + strand, within DDA3937_RS08500 at 1920.935 kb on + strand, within DDA3937_RS08500 at 1920.936 kb on - strand, within DDA3937_RS08500 at 1920.936 kb on - strand, within DDA3937_RS08500 at 1920.936 kb on - strand, within DDA3937_RS08500 at 1920.936 kb on - strand, within DDA3937_RS08500 at 1920.936 kb on - strand, within DDA3937_RS08500 at 1921.000 kb on + strand, within DDA3937_RS08500 at 1921.001 kb on - strand, within DDA3937_RS08500 at 1921.018 kb on + strand, within DDA3937_RS08500 at 1921.025 kb on + strand, within DDA3937_RS08500 at 1921.026 kb on - strand at 1921.026 kb on - strand, within DDA3937_RS08500 at 1921.026 kb on - strand at 1921.117 kb on - strand, within DDA3937_RS08500 at 1921.151 kb on + strand, within DDA3937_RS08500 at 1921.151 kb on + strand, within DDA3937_RS08500 at 1921.277 kb on + strand, within DDA3937_RS08500 at 1921.277 kb on + strand, within DDA3937_RS08500 at 1921.410 kb on + strand at 1921.471 kb on + strand, within DDA3937_RS08500 at 1921.471 kb on + strand, within DDA3937_RS08500 at 1921.472 kb on - strand, within DDA3937_RS08500 at 1921.472 kb on - strand, within DDA3937_RS08500 at 1921.472 kb on - strand, within DDA3937_RS08500 at 1921.472 kb on - strand, within DDA3937_RS08500 at 1921.472 kb on - strand, within DDA3937_RS08500 at 1921.472 kb on - strand, within DDA3937_RS08500 at 1921.528 kb on - strand, within DDA3937_RS08500 at 1921.528 kb on - strand, within DDA3937_RS08500 at 1921.580 kb on + strand, within DDA3937_RS08500 at 1921.580 kb on + strand, within DDA3937_RS08500 at 1921.581 kb on - strand, within DDA3937_RS08500 at 1921.662 kb on + strand, within DDA3937_RS08500 at 1921.663 kb on - strand, within DDA3937_RS08500 at 1921.741 kb on + strand at 1921.742 kb on - strand at 1921.843 kb on + strand at 1921.844 kb on - strand at 1921.844 kb on - strand at 1921.915 kb on - strand at 1921.915 kb on - strand at 1921.915 kb on - strand at 1921.915 kb on - strand at 1921.919 kb on - strand at 1921.919 kb on - strand at 1921.919 kb on - strand at 1921.919 kb on - strand at 1921.919 kb on - strand at 1921.919 kb on - strand at 1921.919 kb on - strand at 1921.919 kb on - strand at 1921.919 kb on - strand at 1921.919 kb on - strand at 1921.919 kb on - strand at 1921.919 kb on - strand at 1921.919 kb on - strand at 1921.919 kb on - strand at 1921.919 kb on - strand at 1921.919 kb on - strand at 1921.919 kb on - strand at 1921.919 kb on - strand at 1921.919 kb on - strand at 1921.919 kb on - strand at 1921.919 kb on - strand at 1921.919 kb on - strand at 1921.919 kb on - strand at 1921.919 kb on - strand at 1921.919 kb on - strand at 1921.919 kb on - strand at 1921.919 kb on - strand at 1921.919 kb on - strand at 1921.919 kb on - strand at 1921.919 kb on - strand at 1921.919 kb on - strand at 1921.919 kb on - strand at 1921.919 kb on - strand at 1921.919 kb on - strand at 1921.921 kb on - strand at 1921.921 kb on - strand at 1921.921 kb on - strand at 1921.923 kb on - strand at 1921.923 kb on - strand at 1921.923 kb on - strand at 1921.923 kb on - strand at 1921.923 kb on - strand at 1921.923 kb on - strand at 1921.932 kb on - strand at 1922.387 kb on + strand at 1922.388 kb on - strand at 1922.418 kb on + strand at 1922.418 kb on + strand at 1922.471 kb on + strand at 1922.526 kb on + strand at 1922.543 kb on + strand at 1922.544 kb on - strand at 1922.558 kb on - strand at 1922.590 kb on + strand at 1922.647 kb on + strand at 1922.647 kb on + strand at 1922.648 kb on - strand at 1922.678 kb on + strand at 1922.731 kb on + strand at 1922.731 kb on + strand at 1922.732 kb on - strand at 1922.732 kb on - strand at 1922.732 kb on - strand at 1922.836 kb on - strand, within DDA3937_RS08505 at 1922.840 kb on - strand, within DDA3937_RS08505
Per-strain Table
Position Strand Gene LocusTag Fraction Atlantic remove 1,919,134 + DDA3937_RS08490 0.67 -1.7 1,919,134 + DDA3937_RS08490 0.67 +0.9 1,919,134 + DDA3937_RS08490 0.67 -2.3 1,919,134 + DDA3937_RS08490 0.67 -1.5 1,919,134 + DDA3937_RS08490 0.67 -1.0 1,919,134 + DDA3937_RS08490 0.67 -0.9 1,919,134 + DDA3937_RS08490 0.67 +0.6 1,919,135 - DDA3937_RS08490 0.67 +0.0 1,919,135 - DDA3937_RS08490 0.67 +2.5 1,919,136 + DDA3937_RS08490 0.67 -0.1 1,919,136 + DDA3937_RS08490 0.67 +1.3 1,919,136 + DDA3937_RS08490 0.67 +0.7 1,919,137 - DDA3937_RS08490 0.67 -0.3 1,919,137 - DDA3937_RS08490 0.67 -2.3 1,919,137 - DDA3937_RS08490 0.67 +1.8 1,919,212 + DDA3937_RS08490 0.78 -1.3 1,919,356 + -0.8 1,919,357 - -0.4 1,919,357 - +0.3 1,919,357 - -1.0 1,919,368 - +1.7 1,919,437 + DDA3937_RS08495 0.17 -0.4 1,919,438 - DDA3937_RS08495 0.18 +0.1 1,919,438 - DDA3937_RS08495 0.18 -1.0 1,919,438 - DDA3937_RS08495 0.18 -1.4 1,919,440 - DDA3937_RS08495 0.18 -1.0 1,919,440 - DDA3937_RS08495 0.18 -1.7 1,919,520 + DDA3937_RS08495 0.37 +0.8 1,919,520 + DDA3937_RS08495 0.37 -0.4 1,919,521 - DDA3937_RS08495 0.38 +0.6 1,919,521 - DDA3937_RS08495 0.38 +1.2 1,919,521 - DDA3937_RS08495 0.38 -1.5 1,919,521 - DDA3937_RS08495 0.38 -1.7 1,919,521 - DDA3937_RS08495 0.38 -0.3 1,919,523 + DDA3937_RS08495 0.38 -1.9 1,919,523 + DDA3937_RS08495 0.38 +0.7 1,919,523 + DDA3937_RS08495 0.38 +0.2 1,919,523 + DDA3937_RS08495 0.38 -0.3 1,919,523 + DDA3937_RS08495 0.38 -0.9 1,919,523 + DDA3937_RS08495 0.38 +0.3 1,919,523 + DDA3937_RS08495 0.38 -0.5 1,919,524 - DDA3937_RS08495 0.38 -1.6 1,919,524 - DDA3937_RS08495 0.38 +0.3 1,919,524 - DDA3937_RS08495 0.38 +0.5 1,919,524 - DDA3937_RS08495 0.38 +1.8 1,919,524 - DDA3937_RS08495 0.38 -1.9 1,919,524 - DDA3937_RS08495 0.38 -1.7 1,919,524 - DDA3937_RS08495 0.38 -0.8 1,919,524 - DDA3937_RS08495 0.38 +0.5 1,919,685 - DDA3937_RS08495 0.78 +5.9 1,919,721 + DDA3937_RS08495 0.86 +1.9 1,919,721 + DDA3937_RS08495 0.86 +0.5 1,919,722 - DDA3937_RS08495 0.87 +0.6 1,919,722 - DDA3937_RS08495 0.87 -2.3 1,919,746 - +0.7 1,919,746 - -0.3 1,919,746 - -0.5 1,919,746 - +1.0 1,919,746 - -1.9 1,919,746 - +1.3 1,919,767 + -1.2 1,919,767 + +0.4 1,919,768 - +3.1 1,919,770 + -0.3 1,919,770 + +1.0 1,919,770 + +0.3 1,919,770 + -0.9 1,919,771 - -2.5 1,919,771 - -0.7 1,919,777 - +0.8 1,919,816 + -0.0 1,919,819 + -1.4 1,919,819 + -0.3 1,919,819 + -1.4 1,919,819 + -0.5 1,919,820 - +1.7 1,919,962 - -1.3 1,919,973 - -1.3 1,920,044 + +1.0 1,920,044 + -0.3 1,920,044 + -0.1 1,920,045 - -1.5 1,920,156 + DDA3937_RS08500 0.12 -2.4 1,920,157 - DDA3937_RS08500 0.12 -0.3 1,920,158 + DDA3937_RS08500 0.12 -0.2 1,920,158 + DDA3937_RS08500 0.12 +1.1 1,920,159 - DDA3937_RS08500 0.12 +0.3 1,920,159 - DDA3937_RS08500 0.12 +1.3 1,920,159 - DDA3937_RS08500 0.12 +2.4 1,920,159 - DDA3937_RS08500 0.12 +0.6 1,920,209 + DDA3937_RS08500 0.14 -1.7 1,920,209 + DDA3937_RS08500 0.14 -1.3 1,920,210 - DDA3937_RS08500 0.15 +0.6 1,920,442 + DDA3937_RS08500 0.26 -0.7 1,920,442 + DDA3937_RS08500 0.26 -1.2 1,920,443 - DDA3937_RS08500 0.26 -1.0 1,920,528 - DDA3937_RS08500 0.31 -1.3 1,920,570 + DDA3937_RS08500 0.33 -1.3 1,920,570 + +0.7 1,920,585 + DDA3937_RS08500 0.33 +0.0 1,920,650 - DDA3937_RS08500 0.37 +0.6 1,920,837 - DDA3937_RS08500 0.46 -2.0 1,920,935 + DDA3937_RS08500 0.51 -0.7 1,920,935 + DDA3937_RS08500 0.51 -0.1 1,920,935 + DDA3937_RS08500 0.51 +0.1 1,920,935 + DDA3937_RS08500 0.51 -1.6 1,920,936 - DDA3937_RS08500 0.51 -1.5 1,920,936 - DDA3937_RS08500 0.51 -0.5 1,920,936 - DDA3937_RS08500 0.51 -1.3 1,920,936 - DDA3937_RS08500 0.51 -1.4 1,920,936 - DDA3937_RS08500 0.51 -1.0 1,921,000 + DDA3937_RS08500 0.54 -1.5 1,921,001 - DDA3937_RS08500 0.55 +2.3 1,921,018 + DDA3937_RS08500 0.55 -0.7 1,921,025 + DDA3937_RS08500 0.56 -1.4 1,921,026 - +1.3 1,921,026 - DDA3937_RS08500 0.56 -2.8 1,921,026 - +1.3 1,921,117 - DDA3937_RS08500 0.60 +0.7 1,921,151 + DDA3937_RS08500 0.62 +0.6 1,921,151 + DDA3937_RS08500 0.62 -1.4 1,921,277 + DDA3937_RS08500 0.68 +0.5 1,921,277 + DDA3937_RS08500 0.68 +1.6 1,921,410 + -0.3 1,921,471 + DDA3937_RS08500 0.78 -2.6 1,921,471 + DDA3937_RS08500 0.78 +0.1 1,921,472 - DDA3937_RS08500 0.78 -0.4 1,921,472 - DDA3937_RS08500 0.78 +0.0 1,921,472 - DDA3937_RS08500 0.78 -0.1 1,921,472 - DDA3937_RS08500 0.78 +2.3 1,921,472 - DDA3937_RS08500 0.78 -0.9 1,921,472 - DDA3937_RS08500 0.78 -0.8 1,921,528 - DDA3937_RS08500 0.81 -0.6 1,921,528 - DDA3937_RS08500 0.81 +0.1 1,921,580 + DDA3937_RS08500 0.84 -1.0 1,921,580 + DDA3937_RS08500 0.84 -1.4 1,921,581 - DDA3937_RS08500 0.84 +0.9 1,921,662 + DDA3937_RS08500 0.88 +0.4 1,921,663 - DDA3937_RS08500 0.88 -0.9 1,921,741 + -1.7 1,921,742 - +2.6 1,921,843 + -1.0 1,921,844 - -0.9 1,921,844 - -1.5 1,921,915 - -1.7 1,921,915 - -1.7 1,921,915 - -1.8 1,921,915 - -1.8 1,921,919 - +0.0 1,921,919 - +0.3 1,921,919 - -0.9 1,921,919 - -0.5 1,921,919 - -1.5 1,921,919 - -1.6 1,921,919 - -0.1 1,921,919 - -0.5 1,921,919 - +0.8 1,921,919 - -2.6 1,921,919 - -1.8 1,921,919 - +0.9 1,921,919 - -0.8 1,921,919 - +0.9 1,921,919 - +0.9 1,921,919 - -0.5 1,921,919 - +0.1 1,921,919 - -2.0 1,921,919 - +1.3 1,921,919 - -0.7 1,921,919 - +0.2 1,921,919 - -0.1 1,921,919 - -0.5 1,921,919 - -2.6 1,921,919 - -0.2 1,921,919 - -0.3 1,921,919 - -0.3 1,921,919 - -1.9 1,921,919 - -1.5 1,921,919 - -2.2 1,921,919 - +0.1 1,921,919 - +0.5 1,921,919 - -1.5 1,921,919 - +0.0 1,921,921 - -1.3 1,921,921 - -0.7 1,921,921 - -0.1 1,921,923 - +0.8 1,921,923 - +1.3 1,921,923 - -1.0 1,921,923 - -2.6 1,921,923 - -1.5 1,921,923 - +0.2 1,921,932 - -1.0 1,922,387 + -0.0 1,922,388 - -0.8 1,922,418 + -1.0 1,922,418 + +1.8 1,922,471 + +0.4 1,922,526 + -3.3 1,922,543 + +1.8 1,922,544 - -1.2 1,922,558 - -0.7 1,922,590 + -0.8 1,922,647 + +1.6 1,922,647 + -0.4 1,922,648 - -1.3 1,922,678 + +0.4 1,922,731 + -1.0 1,922,731 + -0.1 1,922,732 - +0.4 1,922,732 - -2.3 1,922,732 - +0.7 1,922,836 - DDA3937_RS08505 0.12 -1.8 1,922,840 - DDA3937_RS08505 0.13 -0.5
Or see this region's nucleotide sequence