Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS08090

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
1,833,450	+		DDA3937_RS08085	0.79	-0.6
1,833,495	+		DDA3937_RS08085	0.83	-1.3
1,833,505	+		DDA3937_RS08085	0.83	-1.5
1,833,545	-		DDA3937_RS08085	0.87	-0.6
1,833,547	+		DDA3937_RS08085	0.87	-1.6
1,833,563	-		DDA3937_RS08085	0.88	-1.1
1,833,585	-				-1.7
1,833,587	-				-0.6
1,833,590	+				+1.0
1,833,591	-				-0.5
1,833,599	+				-0.1
1,833,673	+				-0.5
1,833,679	+				+0.2
1,833,680	-				-2.7
1,833,789	+				-0.4
1,833,914	-				+2.3
1,833,981	+				-0.7
1,834,044	-				-2.3
1,834,120	+				-0.6
1,834,178	+				+0.5
1,834,178	+				-0.5
1,834,179	-				+1.4
1,834,179	-				-1.3
1,834,179	-				-0.1
1,834,179	-				-2.0
1,834,179	-				-0.9
1,834,179	-				-0.5
1,834,214	+				-0.6
1,834,215	-				-1.2
1,834,215	-				-1.0
1,834,228	+				-0.5
1,834,259	+				+1.0
1,834,260	-				+1.5
1,834,260	-				-1.8
1,834,279	+				-0.4
1,834,279	+				+0.8
1,834,279	+				-0.4
1,834,279	+				-0.2
1,834,280	-				+0.4
1,834,280	-				+0.6
1,834,280	-				-0.6
1,834,281	+				+0.1
1,834,281	+				-0.4
1,834,282	-				+0.2
1,834,288	+				-1.6
1,834,288	+				+0.0
1,834,289	-				-2.0
1,834,289	-				-0.6
1,834,289	-				-0.2
1,834,295	+				+0.2
1,834,295	+				-0.8
1,834,295	+				+1.2
1,834,296	-				+0.5
1,834,296	-				-1.2
1,834,333	+				-0.1
1,834,334	-				+0.4
1,834,338	+				-1.8
1,834,361	-				+0.1
1,834,361	-				-0.8
1,834,389	-				-1.5
1,834,389	-				+0.4
1,834,391	+				+1.2
1,834,419	+				-1.8
1,834,455	+				-1.5
1,834,455	+				+0.3
1,834,455	+				-1.6
1,834,455	+				-0.1
1,834,455	+				-0.5
1,834,482	-				-0.0
1,834,482	-				-2.4
1,834,482	-				-0.3
1,834,594	-		DDA3937_RS08090	0.18	-0.3
1,834,620	+		DDA3937_RS08090	0.21	-1.8
1,834,620	+		DDA3937_RS08090	0.21	+0.5
1,834,621	-		DDA3937_RS08090	0.21	+0.4
1,834,621	-		DDA3937_RS08090	0.21	+0.5
1,834,621	-		DDA3937_RS08090	0.21	-0.1
1,834,638	+		DDA3937_RS08090	0.23	-3.0
1,834,693	-		DDA3937_RS08090	0.29	-1.9
1,834,693	-		DDA3937_RS08090	0.29	-0.9
1,834,693	-				-0.2
1,834,714	+		DDA3937_RS08090	0.31	-0.3
1,834,714	+		DDA3937_RS08090	0.31	-2.6
1,834,715	-		DDA3937_RS08090	0.31	-0.2
1,834,715	-		DDA3937_RS08090	0.31	-0.8
1,834,715	-		DDA3937_RS08090	0.31	-1.5
1,834,785	-		DDA3937_RS08090	0.38	-0.7
1,834,812	+				+0.4
1,834,812	+		DDA3937_RS08090	0.41	-1.8
1,834,813	-		DDA3937_RS08090	0.41	-1.5
1,834,813	-		DDA3937_RS08090	0.41	-2.6
1,834,813	-		DDA3937_RS08090	0.41	-0.2
1,834,813	-		DDA3937_RS08090	0.41	-0.6
1,834,816	+		DDA3937_RS08090	0.41	+0.4
1,834,816	+		DDA3937_RS08090	0.41	+1.6
1,834,816	+		DDA3937_RS08090	0.41	-1.5
1,834,816	+		DDA3937_RS08090	0.41	+1.5
1,834,816	+		DDA3937_RS08090	0.41	-2.1
1,834,816	+		DDA3937_RS08090	0.41	-0.6
1,834,816	+		DDA3937_RS08090	0.41	+0.8
1,834,816	+		DDA3937_RS08090	0.41	-2.0
1,834,816	+		DDA3937_RS08090	0.41	-0.6
1,834,816	+		DDA3937_RS08090	0.41	-1.0
1,834,816	+		DDA3937_RS08090	0.41	-0.8
1,834,816	+		DDA3937_RS08090	0.41	+0.9
1,834,816	+		DDA3937_RS08090	0.41	+0.2
1,834,816	+		DDA3937_RS08090	0.41	-0.8
1,834,817	-		DDA3937_RS08090	0.41	+0.2
1,834,817	-		DDA3937_RS08090	0.41	-0.8
1,834,817	-		DDA3937_RS08090	0.41	+0.5
1,834,817	-		DDA3937_RS08090	0.41	-0.1
1,834,817	-		DDA3937_RS08090	0.41	-2.0
1,834,817	-		DDA3937_RS08090	0.41	+0.6
1,834,817	-		DDA3937_RS08090	0.41	-0.5
1,834,817	-		DDA3937_RS08090	0.41	+0.1
1,834,817	-		DDA3937_RS08090	0.41	+0.1
1,834,817	-		DDA3937_RS08090	0.41	-0.1
1,834,817	-		DDA3937_RS08090	0.41	+1.0
1,834,817	-		DDA3937_RS08090	0.41	-0.2
1,834,817	-		DDA3937_RS08090	0.41	+0.5
1,834,817	-		DDA3937_RS08090	0.41	-2.1
1,834,817	-		DDA3937_RS08090	0.41	+3.0
1,834,817	-		DDA3937_RS08090	0.41	+0.4
1,834,817	-		DDA3937_RS08090	0.41	-1.0
1,834,819	-		DDA3937_RS08090	0.41	-0.2
1,834,819	-		DDA3937_RS08090	0.41	+0.6
1,834,819	-		DDA3937_RS08090	0.41	-0.6
1,834,819	-		DDA3937_RS08090	0.41	-2.0
1,834,819	-		DDA3937_RS08090	0.41	+0.6
1,834,827	+		DDA3937_RS08090	0.42	-2.3
1,834,827	+		DDA3937_RS08090	0.42	+1.4
1,834,827	+		DDA3937_RS08090	0.42	-1.5
1,834,828	-		DDA3937_RS08090	0.42	-1.7
1,834,905	+		DDA3937_RS08090	0.50	-0.5
1,834,905	+		DDA3937_RS08090	0.50	-1.0
1,834,905	+		DDA3937_RS08090	0.50	+0.1
1,834,905	+		DDA3937_RS08090	0.50	+0.0
1,834,905	+		DDA3937_RS08090	0.50	-0.5
1,834,905	+		DDA3937_RS08090	0.50	-2.0
1,834,906	-		DDA3937_RS08090	0.50	+2.7
1,834,927	-		DDA3937_RS08090	0.52	-0.2
1,834,927	-		DDA3937_RS08090	0.52	+0.7
1,834,927	-		DDA3937_RS08090	0.52	-0.2
1,834,998	+		DDA3937_RS08090	0.60	-0.0
1,834,998	+		DDA3937_RS08090	0.60	+0.6
1,834,999	-		DDA3937_RS08090	0.60	-0.7
1,834,999	-		DDA3937_RS08090	0.60	-1.5
1,835,043	+		DDA3937_RS08090	0.64	+0.0
1,835,044	-		DDA3937_RS08090	0.64	-2.1
1,835,050	+		DDA3937_RS08090	0.65	-1.9
1,835,051	-		DDA3937_RS08090	0.65	-0.6
1,835,051	-		DDA3937_RS08090	0.65	+0.5
1,835,191	-		DDA3937_RS08090	0.79	+1.1
1,835,205	+		DDA3937_RS08090	0.81	-2.0
1,835,226	+		DDA3937_RS08090	0.83	-1.2
1,835,227	-		DDA3937_RS08090	0.83	-0.8
1,835,227	-		DDA3937_RS08090	0.83	-2.1
1,835,285	+		DDA3937_RS08090	0.89	-0.8
1,835,285	+		DDA3937_RS08090	0.89	+1.6
1,835,285	+		DDA3937_RS08090	0.89	+1.5
1,835,285	+		DDA3937_RS08090	0.89	+2.7
1,835,285	+		DDA3937_RS08090	0.89	+0.6
1,835,285	+		DDA3937_RS08090	0.89	+0.8
1,835,285	+		DDA3937_RS08090	0.89	+2.5
1,835,286	-		DDA3937_RS08090	0.89	+0.2
1,835,286	-		DDA3937_RS08090	0.89	-0.7
1,835,286	-		DDA3937_RS08090	0.89	-0.6
1,835,289	+		DDA3937_RS08090	0.89	+0.4
1,835,289	+		DDA3937_RS08090	0.89	+0.4
1,835,289	+		DDA3937_RS08090	0.89	-1.0
1,835,289	+		DDA3937_RS08090	0.89	-0.8
1,835,289	+		DDA3937_RS08090	0.89	-1.6
1,835,289	+		DDA3937_RS08090	0.89	-1.2
1,835,290	-		DDA3937_RS08090	0.90	-1.6
1,835,290	-		DDA3937_RS08090	0.90	-0.5
1,835,290	-		DDA3937_RS08090	0.90	-1.1
1,835,308	+				+0.0
1,835,308	+				-1.6
1,835,308	+				+1.1
1,835,308	+				+0.5
1,835,308	+				+0.7
1,835,309	-				-0.4
1,835,389	+				-2.2
1,835,390	-				-0.1
1,835,394	+				-1.2
1,835,394	+				+0.9
1,835,479	-				+0.7
1,835,581	+				-1.7
1,835,581	+				-0.0
1,835,582	-				-0.0
1,835,582	-				-0.3
1,835,582	-				+0.4
1,835,669	+				-1.0
1,835,673	+				-1.0
1,835,702	+				+0.7
1,835,703	-				-1.7
1,835,757	-				-1.2
1,835,810	+				+1.0
1,835,810	+				-0.5
1,836,050	+		DDA3937_RS08095	0.14	+2.0
1,836,051	-		DDA3937_RS08095	0.14	-1.8
1,836,051	-		DDA3937_RS08095	0.14	-2.3
1,836,051	-		DDA3937_RS08095	0.14	-0.2
1,836,089	+		DDA3937_RS08095	0.17	+1.8
1,836,113	+				+3.5
1,836,200	+		DDA3937_RS08095	0.23	-1.0
1,836,200	+		DDA3937_RS08095	0.23	+0.1
1,836,200	+		DDA3937_RS08095	0.23	+0.1
1,836,200	+		DDA3937_RS08095	0.23	+0.0
1,836,200	+		DDA3937_RS08095	0.23	-2.6
1,836,200	+		DDA3937_RS08095	0.23	-0.1
1,836,200	+		DDA3937_RS08095	0.23	-0.3
1,836,201	-		DDA3937_RS08095	0.24	+1.0
1,836,201	-		DDA3937_RS08095	0.24	+0.7
1,836,201	-		DDA3937_RS08095	0.24	-1.0
1,836,201	-		DDA3937_RS08095	0.24	-2.5
1,836,201	-		DDA3937_RS08095	0.24	+0.1
1,836,204	+		DDA3937_RS08095	0.24	+0.6
1,836,204	+		DDA3937_RS08095	0.24	-1.8
1,836,204	+		DDA3937_RS08095	0.24	-1.6
1,836,204	+		DDA3937_RS08095	0.24	+0.9
1,836,204	+		DDA3937_RS08095	0.24	+0.2
1,836,205	-		DDA3937_RS08095	0.24	-0.3
1,836,205	-		DDA3937_RS08095	0.24	+0.5
1,836,205	-		DDA3937_RS08095	0.24	-1.6
1,836,205	-		DDA3937_RS08095	0.24	-0.0
1,836,205	-		DDA3937_RS08095	0.24	+0.7
1,836,205	-		DDA3937_RS08095	0.24	-0.2
1,836,205	-		DDA3937_RS08095	0.24	+0.7
1,836,205	-		DDA3937_RS08095	0.24	+1.5
1,836,216	+		DDA3937_RS08095	0.24	+0.5
1,836,217	-		DDA3937_RS08095	0.25	-0.1
1,836,228	+		DDA3937_RS08095	0.25	+1.0
1,836,228	+		DDA3937_RS08095	0.25	+1.1
1,836,228	+		DDA3937_RS08095	0.25	-0.5
1,836,228	+		DDA3937_RS08095	0.25	+1.4
1,836,228	+		DDA3937_RS08095	0.25	-1.1
1,836,228	+		DDA3937_RS08095	0.25	-0.5
1,836,228	+		DDA3937_RS08095	0.25	-0.8
1,836,229	-		DDA3937_RS08095	0.25	-0.5
1,836,229	-		DDA3937_RS08095	0.25	-2.5
1,836,229	-		DDA3937_RS08095	0.25	-1.6
1,836,229	-		DDA3937_RS08095	0.25	-1.6
1,836,269	+		DDA3937_RS08095	0.28	-0.4
1,836,269	+		DDA3937_RS08095	0.28	-0.2
1,836,270	-		DDA3937_RS08095	0.28	-2.0
1,836,295	-		DDA3937_RS08095	0.29	-0.8