Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS07445

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
1,678,353	+		DDA3937_RS07435	0.47	+1.7
1,678,353	+		DDA3937_RS07435	0.47	-1.7
1,678,353	+		DDA3937_RS07435	0.47	-0.5
1,678,353	+		DDA3937_RS07435	0.47	-0.6
1,678,354	-		DDA3937_RS07435	0.47	+0.6
1,678,354	-		DDA3937_RS07435	0.47	-0.1
1,678,354	-		DDA3937_RS07435	0.47	-0.5
1,678,354	-		DDA3937_RS07435	0.47	+0.4
1,678,354	-		DDA3937_RS07435	0.47	-0.7
1,678,354	-		DDA3937_RS07435	0.47	-0.0
1,678,354	-		DDA3937_RS07435	0.47	-1.2
1,678,354	-		DDA3937_RS07435	0.47	-0.2
1,678,399	-				+1.4
1,678,399	-		DDA3937_RS07435	0.53	+0.7
1,678,399	-		DDA3937_RS07435	0.53	-0.8
1,678,441	-		DDA3937_RS07435	0.58	+0.8
1,678,477	-		DDA3937_RS07435	0.63	+0.2
1,678,597	+		DDA3937_RS07435	0.78	+0.1
1,678,659	+		DDA3937_RS07435	0.86	-0.0
1,678,660	-		DDA3937_RS07435	0.86	+0.1
1,678,733	-				+0.8
1,678,740	+				+0.8
1,678,740	+				+0.7
1,678,741	-				-0.5
1,678,765	+				+0.7
1,678,765	+				-1.2
1,678,765	+				-1.0
1,678,766	-				+2.6
1,678,766	-				+0.2
1,678,766	-				-0.2
1,678,766	-				-1.3
1,678,766	-				-1.4
1,678,943	+		DDA3937_RS07440	0.31	-3.0
1,678,944	-		DDA3937_RS07440	0.31	-0.2
1,678,944	-		DDA3937_RS07440	0.31	-2.1
1,678,944	-		DDA3937_RS07440	0.31	+0.0
1,679,199	+		DDA3937_RS07440	0.76	+0.1
1,679,199	+		DDA3937_RS07440	0.76	-2.3
1,679,200	-		DDA3937_RS07440	0.76	+0.6
1,679,217	+		DDA3937_RS07440	0.79	+2.1
1,679,234	+		DDA3937_RS07440	0.82	-0.4
1,679,285	+				-0.5
1,679,285	+				+2.1
1,679,285	+				+2.9
1,679,286	-				-0.1
1,679,331	+				-0.6
1,679,331	+				+0.4
1,679,382	+				-1.8
1,679,400	+				+0.5
1,679,400	+				+0.4
1,679,463	+				+0.8
1,679,463	+				-0.3
1,679,463	+				-1.8
1,679,524	+		DDA3937_RS07445	0.10	-1.2
1,679,525	-		DDA3937_RS07445	0.10	+0.7
1,679,525	-		DDA3937_RS07445	0.10	-1.4
1,679,675	-		DDA3937_RS07445	0.19	-1.9
1,679,675	-		DDA3937_RS07445	0.19	+0.1
1,679,741	-		DDA3937_RS07445	0.23	+1.4
1,679,776	-		DDA3937_RS07445	0.25	-1.6
1,679,889	-		DDA3937_RS07445	0.31	-1.4
1,679,899	-		DDA3937_RS07445	0.32	-2.2
1,679,974	+		DDA3937_RS07445	0.36	-1.9
1,680,084	+		DDA3937_RS07445	0.43	+1.8
1,680,085	-		DDA3937_RS07445	0.43	+0.6
1,680,250	+		DDA3937_RS07445	0.52	-0.0
1,680,303	+		DDA3937_RS07445	0.55	-0.8
1,680,369	+		DDA3937_RS07445	0.59	+1.8
1,680,369	+		DDA3937_RS07445	0.59	-0.1
1,680,370	-		DDA3937_RS07445	0.59	-1.6
1,680,370	-		DDA3937_RS07445	0.59	+0.9
1,680,414	+		DDA3937_RS07445	0.62	+1.4
1,680,415	-		DDA3937_RS07445	0.62	+1.4
1,680,415	-		DDA3937_RS07445	0.62	+1.7
1,680,415	-		DDA3937_RS07445	0.62	-0.9
1,680,552	+		DDA3937_RS07445	0.70	-0.2
1,680,553	-		DDA3937_RS07445	0.70	-1.0
1,680,553	-		DDA3937_RS07445	0.70	-0.4
1,680,553	-		DDA3937_RS07445	0.70	-1.0
1,680,618	+				-0.6
1,680,690	+		DDA3937_RS07445	0.78	-0.3
1,680,690	+		DDA3937_RS07445	0.78	-0.6
1,680,690	+		DDA3937_RS07445	0.78	-1.8
1,680,691	-		DDA3937_RS07445	0.78	-1.4
1,680,691	-		DDA3937_RS07445	0.78	-2.1
1,680,828	+		DDA3937_RS07445	0.86	+0.0
1,680,828	+		DDA3937_RS07445	0.86	-0.7
1,680,828	+		DDA3937_RS07445	0.86	+0.1
1,680,828	+		DDA3937_RS07445	0.86	-0.9
1,680,828	+		DDA3937_RS07445	0.86	+1.1
1,680,828	+		DDA3937_RS07445	0.86	-0.7
1,680,828	+		DDA3937_RS07445	0.86	-0.4
1,680,828	+		DDA3937_RS07445	0.86	-1.4
1,680,828	+		DDA3937_RS07445	0.86	-1.4
1,680,829	-		DDA3937_RS07445	0.86	+0.7
1,680,829	-		DDA3937_RS07445	0.86	-0.2
1,680,829	-		DDA3937_RS07445	0.86	+0.7
1,680,829	-		DDA3937_RS07445	0.86	+0.2
1,680,829	-		DDA3937_RS07445	0.86	+0.8
1,680,829	-		DDA3937_RS07445	0.86	-0.0
1,680,831	+		DDA3937_RS07445	0.86	-1.2
1,680,831	+		DDA3937_RS07445	0.86	-0.5
1,680,831	+		DDA3937_RS07445	0.86	-1.3
1,680,832	-		DDA3937_RS07445	0.86	-1.8
1,680,832	-		DDA3937_RS07445	0.86	-3.1
1,680,832	-		DDA3937_RS07445	0.86	+0.3
1,680,875	+		DDA3937_RS07445	0.88	-1.8
1,680,878	+		DDA3937_RS07445	0.89	-1.0
1,680,879	-		DDA3937_RS07445	0.89	-0.2
1,680,904	-				+0.3
1,680,904	-				-1.4
1,680,904	-				-2.3
1,680,904	-				-1.0
1,680,904	-				-1.0
1,680,906	+				+1.5
1,680,906	+				-0.2
1,680,906	+				+0.4
1,680,906	+				+2.1
1,680,907	-				-0.3
1,680,907	-				-0.8
1,681,026	+				+0.7
1,681,026	+				-1.2
1,681,026	+				-2.2
1,681,069	+				-0.1
1,681,069	+				+0.8
1,681,078	+				-0.8
1,681,078	+				-2.3
1,681,078	+				+1.3
1,681,078	+				+1.2
1,681,079	-				+0.5
1,681,079	-				-0.4
1,681,134	-				-0.8
1,681,134	-				-1.1
1,681,136	+				-0.4
1,681,148	+				-0.1
1,681,148	+				-1.0
1,681,148	+				+0.5
1,681,148	+				-2.0
1,681,149	-				-1.0
1,681,151	+				-2.8
1,681,151	+				+0.2
1,681,152	-				+2.3
1,681,152	-				-1.2
1,681,157	+				-1.9
1,681,157	+				+0.5
1,681,157	+				-3.4
1,681,163	+				-1.0
1,681,163	+				-1.6
1,681,164	-				+0.7
1,681,164	-				+0.8
1,681,164	-				-0.8
1,681,166	+				+0.4
1,681,166	+				+1.4
1,681,167	-				+1.4
1,681,193	+				-0.4
1,681,193	+				-0.1
1,681,193	+				-0.3
1,681,193	+				+0.8
1,681,193	+				+1.1
1,681,197	-				-1.8
1,681,197	-				-1.8
1,681,310	+		DDA3937_RS07450	0.14	+0.3
1,681,335	+		DDA3937_RS07450	0.16	-1.0
1,681,488	+		DDA3937_RS07450	0.25	+0.4
1,681,488	+		DDA3937_RS07450	0.25	+2.0
1,681,489	-		DDA3937_RS07450	0.25	+1.4
1,681,539	+		DDA3937_RS07450	0.28	+0.4
1,681,637	+		DDA3937_RS07450	0.34	-1.0
1,681,651	+		DDA3937_RS07450	0.35	+0.4
1,681,652	-		DDA3937_RS07450	0.35	-2.4
1,681,715	+		DDA3937_RS07450	0.39	-0.9
1,681,715	+		DDA3937_RS07450	0.39	+0.3
1,681,716	-		DDA3937_RS07450	0.39	-0.5
1,681,716	-		DDA3937_RS07450	0.39	-0.9
1,681,716	-		DDA3937_RS07450	0.39	+0.1
1,681,716	-		DDA3937_RS07450	0.39	-2.2
1,681,716	-		DDA3937_RS07450	0.39	-1.3
1,681,716	-		DDA3937_RS07450	0.39	-0.1
1,681,930	+		DDA3937_RS07450	0.51	-2.2
1,681,931	-		DDA3937_RS07450	0.51	-0.9
1,681,931	-		DDA3937_RS07450	0.51	+0.5
1,681,931	-		DDA3937_RS07450	0.51	-1.8