Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS07210

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
1,623,885	+				+0.3
1,623,885	+				-2.8
1,623,886	-				-0.6
1,623,886	-				-0.7
1,623,944	+				-2.0
1,623,945	-				+1.9
1,623,945	-				+1.2
1,624,067	+		DDA3937_RS07205	0.15	-2.5
1,624,067	+		DDA3937_RS07205	0.15	+0.1
1,624,068	-		DDA3937_RS07205	0.15	-0.2
1,624,096	+		DDA3937_RS07205	0.19	-0.0
1,624,278	-		DDA3937_RS07205	0.44	-1.5
1,624,278	-		DDA3937_RS07205	0.44	+0.7
1,624,278	-		DDA3937_RS07205	0.44	+0.4
1,624,418	+		DDA3937_RS07205	0.64	-0.6
1,624,418	+		DDA3937_RS07205	0.64	-2.2
1,624,419	-		DDA3937_RS07205	0.64	-1.8
1,624,458	+		DDA3937_RS07205	0.69	-0.8
1,624,526	+		DDA3937_RS07205	0.79	+1.2
1,624,526	+		DDA3937_RS07205	0.79	+1.0
1,624,527	-		DDA3937_RS07205	0.79	+0.1
1,624,527	-		DDA3937_RS07205	0.79	-0.9
1,624,686	-				-0.2
1,624,686	-				-1.2
1,624,686	-				+1.4
1,624,686	-				+1.2
1,624,699	+				+0.1
1,624,700	-				+1.1
1,624,715	-				-0.9
1,624,739	-				-1.1
1,624,745	-				+2.7
1,624,760	-				+0.7
1,624,865	+				+0.7
1,624,911	+				+1.0
1,624,912	-				-1.9
1,624,912	-				-1.2
1,624,912	-				-0.9
1,624,912	-				+0.3
1,624,915	-				-0.8
1,624,915	-				-2.0
1,624,918	+				-1.0
1,624,918	+				-0.2
1,624,919	-				-0.6
1,624,919	-				-0.1
1,624,919	-				-2.3
1,624,919	-				-1.2
1,624,924	+				-0.2
1,624,925	-				+1.7
1,624,944	+		DDA3937_RS07210	0.12	-1.4
1,624,944	+		DDA3937_RS07210	0.12	-1.4
1,624,944	+		DDA3937_RS07210	0.12	+0.1
1,625,010	+		DDA3937_RS07210	0.17	-1.5
1,625,011	-		DDA3937_RS07210	0.17	-0.6
1,625,011	-		DDA3937_RS07210	0.17	-1.4
1,625,049	+		DDA3937_RS07210	0.21	-1.1
1,625,050	-		DDA3937_RS07210	0.21	-1.6
1,625,077	+		DDA3937_RS07210	0.23	-0.5
1,625,110	-		DDA3937_RS07210	0.26	+0.9
1,625,113	+		DDA3937_RS07210	0.26	-0.8
1,625,114	-		DDA3937_RS07210	0.26	-0.2
1,625,114	-		DDA3937_RS07210	0.26	-2.3
1,625,114	-		DDA3937_RS07210	0.26	+0.1
1,625,114	-		DDA3937_RS07210	0.26	-1.5
1,625,114	-		DDA3937_RS07210	0.26	-0.3
1,625,135	-		DDA3937_RS07210	0.28	+0.3
1,625,135	-		DDA3937_RS07210	0.28	-0.5
1,625,135	-		DDA3937_RS07210	0.28	+0.2
1,625,147	-		DDA3937_RS07210	0.29	+1.8
1,625,162	-		DDA3937_RS07210	0.31	-0.1
1,625,162	-		DDA3937_RS07210	0.31	-1.3
1,625,214	+		DDA3937_RS07210	0.35	-1.7
1,625,266	+		DDA3937_RS07210	0.40	-1.3
1,625,267	-		DDA3937_RS07210	0.40	+0.2
1,625,267	-		DDA3937_RS07210	0.40	-0.0
1,625,267	-		DDA3937_RS07210	0.40	+0.0
1,625,274	+		DDA3937_RS07210	0.40	+1.4
1,625,275	-		DDA3937_RS07210	0.40	-1.9
1,625,311	+		DDA3937_RS07210	0.44	+0.6
1,625,312	-				+0.8
1,625,312	-		DDA3937_RS07210	0.44	+1.2
1,625,409	+		DDA3937_RS07210	0.52	-0.4
1,625,409	+		DDA3937_RS07210	0.52	+0.0
1,625,410	-		DDA3937_RS07210	0.52	+1.6
1,625,410	-		DDA3937_RS07210	0.52	+0.4
1,625,559	+		DDA3937_RS07210	0.65	+1.5
1,625,560	-		DDA3937_RS07210	0.65	-0.2
1,625,560	-		DDA3937_RS07210	0.65	+0.2
1,625,560	-		DDA3937_RS07210	0.65	+0.0
1,625,601	+		DDA3937_RS07210	0.69	-0.6
1,625,601	+		DDA3937_RS07210	0.69	-0.3
1,625,601	+		DDA3937_RS07210	0.69	+0.9
1,625,601	+		DDA3937_RS07210	0.69	-1.3
1,625,601	+		DDA3937_RS07210	0.69	+0.2
1,625,602	-		DDA3937_RS07210	0.69	+0.4
1,625,602	-		DDA3937_RS07210	0.69	+0.4
1,625,740	+		DDA3937_RS07210	0.81	-2.2
1,625,740	+		DDA3937_RS07210	0.81	+0.4
1,625,740	+		DDA3937_RS07210	0.81	+1.7
1,625,740	+		DDA3937_RS07210	0.81	+0.0
1,625,741	-		DDA3937_RS07210	0.81	+0.4
1,625,775	+		DDA3937_RS07210	0.84	+0.7
1,625,775	+				+0.4
1,625,775	+		DDA3937_RS07210	0.84	-1.6
1,625,775	+		DDA3937_RS07210	0.84	-0.6
1,625,775	+		DDA3937_RS07210	0.84	+0.1
1,625,776	-		DDA3937_RS07210	0.84	+0.5
1,625,776	-		DDA3937_RS07210	0.84	+0.6
1,625,776	-		DDA3937_RS07210	0.84	-0.4
1,625,807	+		DDA3937_RS07210	0.87	+1.2
1,625,807	+		DDA3937_RS07210	0.87	-0.8
1,625,807	+		DDA3937_RS07210	0.87	-2.6
1,625,808	-		DDA3937_RS07210	0.87	+0.3
1,625,808	-		DDA3937_RS07210	0.87	-1.0
1,625,808	-		DDA3937_RS07210	0.87	+0.0
1,625,808	-		DDA3937_RS07210	0.87	+0.4
1,625,810	+		DDA3937_RS07210	0.87	-0.2
1,625,867	-				+0.4
1,625,872	+				-1.5
1,625,872	+				-0.5
1,625,888	+				+0.6
1,625,889	-				+0.7
1,625,889	-				-1.0
1,625,889	-				-1.5
1,625,892	-				+1.6
1,625,953	+				-0.0
1,625,954	-				-1.9
1,625,954	-				-1.1
1,625,954	-				+0.4
1,625,972	-				-0.9
1,625,983	-				-1.5
1,626,014	+				+0.4
1,626,014	+				+0.0
1,626,067	+				+0.9
1,626,091	+				-1.2
1,626,091	+				+0.6
1,626,091	+				+0.3
1,626,091	+				+0.0
1,626,092	-				+0.5
1,626,092	-				+1.2
1,626,092	-				-1.2
1,626,092	-				-1.4
1,626,092	-				-0.3
1,626,092	-				-1.0
1,626,092	-				-0.2
1,626,092	-				-0.5
1,626,092	-				-0.0
1,626,095	-				+0.5
1,626,095	-				+0.1
1,626,095	-				-1.4
1,626,121	+				+0.7
1,626,127	+				+1.1
1,626,127	+				+1.0
1,626,127	+				+1.0
1,626,127	+				+0.7
1,626,128	-				+2.0
1,626,128	-				-1.9
1,626,180	+				-1.5
1,626,180	+				+0.4
1,626,181	-				+0.6
1,626,230	+				+0.8
1,626,230	+				-1.3
1,626,230	+				-0.7
1,626,230	+				-0.5
1,626,230	+				+0.6
1,626,231	-				-0.0
1,626,395	+		DDA3937_RS07215	0.11	-1.5
1,626,531	-		DDA3937_RS07215	0.28	-1.4
1,626,603	-		DDA3937_RS07215	0.37	-0.9
1,626,617	+		DDA3937_RS07215	0.38	-1.5
1,626,617	+		DDA3937_RS07215	0.38	+0.9
1,626,643	+		DDA3937_RS07215	0.42	+0.5
1,626,643	+		DDA3937_RS07215	0.42	-1.6
1,626,643	+		DDA3937_RS07215	0.42	-1.4
1,626,644	-		DDA3937_RS07215	0.42	-1.3
1,626,644	-				+0.4
1,626,644	-		DDA3937_RS07215	0.42	-0.7
1,626,686	+		DDA3937_RS07215	0.47	+0.4
1,626,713	+		DDA3937_RS07215	0.50	-0.2
1,626,713	+		DDA3937_RS07215	0.50	-2.3
1,626,714	-		DDA3937_RS07215	0.51	-0.1
1,626,828	+		DDA3937_RS07215	0.65	-0.8
1,626,829	-		DDA3937_RS07215	0.65	+1.2