Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS06385

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
1,426,699	+		DDA3937_RS06380	0.58	-1.2
1,426,708	+		DDA3937_RS06380	0.59	+0.1
1,426,708	+		DDA3937_RS06380	0.59	+1.0
1,426,708	+		DDA3937_RS06380	0.59	+1.5
1,426,709	-		DDA3937_RS06380	0.59	+0.6
1,426,792	+		DDA3937_RS06380	0.63	-2.2
1,426,793	-		DDA3937_RS06380	0.63	+1.9
1,426,793	-		DDA3937_RS06380	0.63	-0.0
1,426,793	-		DDA3937_RS06380	0.63	+1.6
1,426,922	-		DDA3937_RS06380	0.69	-2.7
1,426,994	+		DDA3937_RS06380	0.73	+1.5
1,426,995	-		DDA3937_RS06380	0.73	-0.7
1,426,995	-		DDA3937_RS06380	0.73	-0.0
1,427,012	+		DDA3937_RS06380	0.73	+0.5
1,427,442	+				+0.3
1,427,442	+				+1.1
1,427,442	+				+2.9
1,427,442	+				+0.7
1,427,442	+				-1.6
1,427,443	-				-1.0
1,427,443	-				-0.0
1,427,516	-				+0.2
1,427,552	-				+0.4
1,427,596	+				-0.4
1,427,596	+				+0.2
1,427,597	-				-0.8
1,427,597	-				-0.7
1,427,649	+				+0.6
1,427,822	+		DDA3937_RS06385	0.15	+2.9
1,427,822	+		DDA3937_RS06385	0.15	+0.2
1,427,822	+		DDA3937_RS06385	0.15	-0.4
1,427,822	+		DDA3937_RS06385	0.15	-0.9
1,427,822	+		DDA3937_RS06385	0.15	-0.5
1,427,885	+		DDA3937_RS06385	0.18	+1.0
1,427,886	-		DDA3937_RS06385	0.18	-1.8
1,427,892	-		DDA3937_RS06385	0.19	+0.8
1,427,892	-		DDA3937_RS06385	0.19	-1.0
1,428,053	+		DDA3937_RS06385	0.28	-1.9
1,428,054	-		DDA3937_RS06385	0.28	-0.5
1,428,122	+		DDA3937_RS06385	0.32	-1.1
1,428,123	-		DDA3937_RS06385	0.33	+1.2
1,428,136	+		DDA3937_RS06385	0.33	+0.5
1,428,136	+		DDA3937_RS06385	0.33	+0.3
1,428,137	-		DDA3937_RS06385	0.33	-2.2
1,428,365	+		DDA3937_RS06385	0.47	-0.7
1,428,365	+		DDA3937_RS06385	0.47	+0.2
1,428,365	+		DDA3937_RS06385	0.47	+1.1
1,428,459	+		DDA3937_RS06385	0.52	-0.3
1,428,459	+		DDA3937_RS06385	0.52	-0.1
1,428,460	-		DDA3937_RS06385	0.52	-0.8
1,428,588	+		DDA3937_RS06385	0.60	+0.3
1,428,589	-		DDA3937_RS06385	0.60	+0.5
1,428,589	-		DDA3937_RS06385	0.60	+0.1
1,428,663	-		DDA3937_RS06385	0.65	-1.7
1,428,682	-		DDA3937_RS06385	0.66	-0.4
1,428,682	-		DDA3937_RS06385	0.66	-0.1
1,428,682	-		DDA3937_RS06385	0.66	+0.2
1,428,685	-		DDA3937_RS06385	0.66	+0.3
1,428,685	-		DDA3937_RS06385	0.66	+1.6
1,428,685	-		DDA3937_RS06385	0.66	+0.2
1,428,685	-		DDA3937_RS06385	0.66	+1.2
1,428,737	+		DDA3937_RS06385	0.69	-1.1
1,428,737	+		DDA3937_RS06385	0.69	-0.4
1,428,737	+		DDA3937_RS06385	0.69	-2.2
1,428,738	-		DDA3937_RS06385	0.69	+2.0
1,428,738	-		DDA3937_RS06385	0.69	-0.6
1,428,738	-		DDA3937_RS06385	0.69	+1.6
1,428,887	+		DDA3937_RS06385	0.78	+0.7
1,428,888	-		DDA3937_RS06385	0.78	+0.0
1,428,888	-		DDA3937_RS06385	0.78	-2.0
1,428,912	-		DDA3937_RS06385	0.79	-0.6
1,428,943	+		DDA3937_RS06385	0.81	+1.2
1,429,079	+		DDA3937_RS06385	0.89	-0.8
1,429,079	+		DDA3937_RS06385	0.89	-1.6
1,429,079	+		DDA3937_RS06385	0.89	-0.4
1,429,079	+		DDA3937_RS06385	0.89	-2.2
1,429,079	+		DDA3937_RS06385	0.89	+1.1
1,429,080	-		DDA3937_RS06385	0.89	-0.8
1,429,080	-		DDA3937_RS06385	0.89	+0.5
1,429,148	-				-0.9
1,429,148	-				-1.8
1,429,213	+				-0.1
1,429,213	+				+0.2
1,429,288	+		DDA3937_RS06390	0.31	-0.6
1,429,289	-		DDA3937_RS06390	0.32	+0.6
1,429,308	+		DDA3937_RS06390	0.53	-1.4
1,429,308	+		DDA3937_RS06390	0.53	-0.0
1,429,308	+		DDA3937_RS06390	0.53	-1.2
1,429,309	-		DDA3937_RS06390	0.54	+0.2
1,429,309	-		DDA3937_RS06390	0.54	-1.5
1,429,309	-		DDA3937_RS06390	0.54	+0.0
1,429,311	+		DDA3937_RS06390	0.57	-0.3
1,429,312	-		DDA3937_RS06390	0.58	-0.5
1,429,320	+		DDA3937_RS06390	0.67	-0.4
1,429,320	+		DDA3937_RS06390	0.67	+0.1
1,429,321	-		DDA3937_RS06390	0.68	-0.1
1,429,321	-		DDA3937_RS06390	0.68	+1.5
1,429,321	-		DDA3937_RS06390	0.68	-1.0
1,429,321	-		DDA3937_RS06390	0.68	+0.9
1,429,323	-		DDA3937_RS06390	0.70	-1.5
1,429,343	+				+2.1
1,429,343	+				-0.4
1,429,461	-				-0.5
1,429,461	-				-1.0
1,429,547	+				+0.2
1,429,547	+				-0.2
1,429,548	-				-1.4
1,429,556	+				-0.0
1,429,556	+				+0.5
1,429,557	-				-1.2
1,429,557	-				-0.2
1,429,585	-				-1.1
1,429,585	-				+0.1
1,429,585	-				-1.4
1,429,585	-				-0.5
1,429,585	-				-0.7
1,429,585	-				+0.9
1,429,585	-				+0.2
1,429,638	+				-1.2
1,429,648	+				-0.0
1,429,649	-				+0.7
1,429,769	+				+0.6
1,429,793	+				-1.4
1,429,793	+				+0.9
1,429,793	+				+0.3
1,429,793	+				-0.1
1,429,793	+				-0.6
1,429,793	+				+0.9
1,429,793	+				+0.5
1,429,793	+				+1.0
1,429,793	+				+0.4
1,429,793	+				-1.2
1,429,793	+				-2.3
1,429,793	+				-0.3
1,429,793	+				-0.1
1,429,793	+				-0.2
1,429,794	-				-1.4
1,429,794	-				+0.6
1,429,794	-				+0.2
1,429,794	-				+1.0
1,429,794	-				+0.1
1,429,794	-				-0.0
1,429,794	-				-0.2
1,429,794	-				-0.4
1,429,794	-				-1.9
1,429,794	-				-0.3
1,429,794	-				+0.4
1,429,794	-				-0.4
1,429,794	-				-1.2
1,429,794	-				-0.3
1,429,794	-				+0.1
1,429,794	-				+0.6
1,429,794	-				-3.2
1,429,794	-				-1.4
1,429,902	-		DDA3937_RS06395	0.57	-0.0
1,429,902	-		DDA3937_RS06395	0.57	-2.2
1,429,907	+		DDA3937_RS06395	0.59	-1.2
1,429,907	+		DDA3937_RS06395	0.59	-1.1
1,429,907	+		DDA3937_RS06395	0.59	-0.4
1,429,907	+		DDA3937_RS06395	0.59	-0.7
1,429,908	-		DDA3937_RS06395	0.60	+0.5
1,429,908	-		DDA3937_RS06395	0.60	-0.0
1,429,908	-		DDA3937_RS06395	0.60	-0.4
1,429,908	-		DDA3937_RS06395	0.60	-0.6
1,429,980	-				-1.9
1,430,079	+				-1.6
1,430,106	+				-0.2
1,430,107	-				+0.3
1,430,196	-				-0.9
1,430,230	+				+0.5
1,430,230	+				+2.0
1,430,231	-				-0.7
1,430,231	-				+0.3
1,430,238	+				+0.2
1,430,238	+				-0.7
1,430,238	+				-0.4
1,430,239	-				-0.2
1,430,239	-				-0.7
1,430,239	-				+0.2
1,430,251	+				-0.2