Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS06055

Experiment: Atlantic

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDDA3937_RS06050 and DDA3937_RS06055 are separated by 175 nucleotidesDDA3937_RS06055 and DDA3937_RS06060 are separated by 2 nucleotidesDDA3937_RS06060 and DDA3937_RS06065 are separated by 102 nucleotides DDA3937_RS06050: DDA3937_RS06050 - M48 family metallopeptidase, at 1,362,195 to 1,363,658 _RS06050 DDA3937_RS06055: DDA3937_RS06055 - thioredoxin-dependent thiol peroxidase, at 1,363,834 to 1,364,301 _RS06055 DDA3937_RS06060: DDA3937_RS06060 - glycine cleavage system transcriptional repressor, at 1,364,304 to 1,364,918 _RS06060 DDA3937_RS06065: DDA3937_RS06065 - 4-hydroxy-tetrahydrodipicolinate synthase, at 1,365,021 to 1,365,899 _RS06065 Position (kb) 1363 1364 1365Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6 7at 1363.287 kb on + strand, within DDA3937_RS06050at 1363.435 kb on + strand, within DDA3937_RS06050at 1363.435 kb on + strand, within DDA3937_RS06050at 1363.436 kb on - strand, within DDA3937_RS06050at 1363.436 kb on - strand, within DDA3937_RS06050at 1363.447 kb on - strand, within DDA3937_RS06050at 1363.492 kb on + strand, within DDA3937_RS06050at 1363.492 kb on + strand, within DDA3937_RS06050at 1363.658 kb on + strandat 1363.658 kb on + strandat 1363.699 kb on + strandat 1363.705 kb on - strandat 1363.755 kb on - strandat 1363.755 kb on - strandat 1363.897 kb on + strand, within DDA3937_RS06055at 1363.955 kb on + strand, within DDA3937_RS06055at 1363.955 kb on + strand, within DDA3937_RS06055at 1363.955 kb on + strand, within DDA3937_RS06055at 1363.956 kb on - strand, within DDA3937_RS06055at 1363.956 kb on - strand, within DDA3937_RS06055at 1364.058 kb on + strand, within DDA3937_RS06055at 1364.189 kb on + strand, within DDA3937_RS06055at 1364.195 kb on + strand, within DDA3937_RS06055at 1364.195 kb on + strand, within DDA3937_RS06055at 1364.196 kb on - strand, within DDA3937_RS06055at 1364.196 kb on - strand, within DDA3937_RS06055at 1364.196 kb on - strand, within DDA3937_RS06055at 1364.232 kb on + strand, within DDA3937_RS06055at 1364.233 kb on - strand, within DDA3937_RS06055at 1364.305 kb on + strandat 1364.306 kb on - strandat 1364.306 kb on - strandat 1364.336 kb on - strandat 1364.348 kb on + strandat 1364.348 kb on + strandat 1364.348 kb on + strandat 1364.348 kb on + strandat 1364.349 kb on - strandat 1364.349 kb on - strandat 1364.349 kb on - strandat 1364.349 kb on - strandat 1364.349 kb on - strandat 1364.351 kb on + strandat 1364.351 kb on + strandat 1364.352 kb on - strandat 1364.375 kb on + strand, within DDA3937_RS06060at 1364.375 kb on + strand, within DDA3937_RS06060at 1364.375 kb on + strand, within DDA3937_RS06060at 1364.375 kb on + strand, within DDA3937_RS06060at 1364.375 kb on + strand, within DDA3937_RS06060at 1364.375 kb on + strand, within DDA3937_RS06060at 1364.375 kb on + strand, within DDA3937_RS06060at 1364.376 kb on - strand, within DDA3937_RS06060at 1364.376 kb on - strand, within DDA3937_RS06060at 1364.376 kb on - strand, within DDA3937_RS06060at 1364.376 kb on - strand, within DDA3937_RS06060at 1364.376 kb on - strand, within DDA3937_RS06060at 1364.376 kb on - strand, within DDA3937_RS06060at 1364.376 kb on - strand, within DDA3937_RS06060at 1364.376 kb on - strand, within DDA3937_RS06060at 1364.376 kb on - strand, within DDA3937_RS06060at 1364.376 kb on - strand, within DDA3937_RS06060at 1364.379 kb on + strand, within DDA3937_RS06060at 1364.379 kb on + strand, within DDA3937_RS06060at 1364.379 kb on + strand, within DDA3937_RS06060at 1364.379 kb on + strand, within DDA3937_RS06060at 1364.379 kb on + strand, within DDA3937_RS06060at 1364.379 kb on + strand, within DDA3937_RS06060at 1364.379 kb on + strand, within DDA3937_RS06060at 1364.379 kb on + strand, within DDA3937_RS06060at 1364.380 kb on - strand, within DDA3937_RS06060at 1364.380 kb on - strand, within DDA3937_RS06060at 1364.380 kb on - strand, within DDA3937_RS06060at 1364.380 kb on - strand, within DDA3937_RS06060at 1364.380 kb on - strand, within DDA3937_RS06060at 1364.380 kb on - strand, within DDA3937_RS06060at 1364.380 kb on - strand, within DDA3937_RS06060at 1364.380 kb on - strand, within DDA3937_RS06060at 1364.380 kb on - strand, within DDA3937_RS06060at 1364.380 kb on - strand, within DDA3937_RS06060at 1364.380 kb on - strand, within DDA3937_RS06060at 1364.380 kb on - strand, within DDA3937_RS06060at 1364.380 kb on - strand, within DDA3937_RS06060at 1364.380 kb on - strand, within DDA3937_RS06060at 1364.380 kb on - strand, within DDA3937_RS06060at 1364.402 kb on + strandat 1364.402 kb on + strand, within DDA3937_RS06060at 1364.402 kb on + strand, within DDA3937_RS06060at 1364.439 kb on - strand, within DDA3937_RS06060at 1364.449 kb on + strand, within DDA3937_RS06060at 1364.449 kb on + strand, within DDA3937_RS06060at 1364.450 kb on - strand, within DDA3937_RS06060at 1364.450 kb on - strand, within DDA3937_RS06060at 1364.450 kb on - strand, within DDA3937_RS06060at 1364.450 kb on - strand, within DDA3937_RS06060at 1364.450 kb on - strand, within DDA3937_RS06060at 1364.450 kb on - strand, within DDA3937_RS06060at 1364.450 kb on - strand, within DDA3937_RS06060at 1364.450 kb on - strand, within DDA3937_RS06060at 1364.450 kb on - strand, within DDA3937_RS06060at 1364.450 kb on - strand, within DDA3937_RS06060at 1364.450 kb on - strand, within DDA3937_RS06060at 1364.450 kb on - strand, within DDA3937_RS06060at 1364.639 kb on + strand, within DDA3937_RS06060at 1364.640 kb on - strand, within DDA3937_RS06060at 1364.690 kb on + strand, within DDA3937_RS06060at 1364.723 kb on + strand, within DDA3937_RS06060at 1364.723 kb on + strand, within DDA3937_RS06060at 1364.724 kb on - strand, within DDA3937_RS06060at 1364.799 kb on - strand, within DDA3937_RS06060at 1364.841 kb on - strand, within DDA3937_RS06060at 1364.851 kb on + strand, within DDA3937_RS06060at 1364.851 kb on + strand, within DDA3937_RS06060at 1364.851 kb on + strand, within DDA3937_RS06060at 1364.851 kb on + strand, within DDA3937_RS06060at 1364.852 kb on - strand, within DDA3937_RS06060at 1364.852 kb on - strand, within DDA3937_RS06060at 1364.852 kb on - strand, within DDA3937_RS06060at 1364.852 kb on - strand, within DDA3937_RS06060at 1364.852 kb on - strand, within DDA3937_RS06060at 1364.852 kb on - strand, within DDA3937_RS06060at 1364.889 kb on - strandat 1364.904 kb on + strandat 1364.904 kb on + strandat 1364.905 kb on - strandat 1364.912 kb on + strandat 1364.912 kb on + strandat 1364.913 kb on - strandat 1364.913 kb on - strandat 1364.919 kb on - strandat 1364.919 kb on - strandat 1364.973 kb on + strandat 1364.973 kb on + strandat 1364.973 kb on + strandat 1364.973 kb on + strandat 1364.973 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Atlantic
remove
1,363,287 + DDA3937_RS06050 0.75 -0.9
1,363,435 + DDA3937_RS06050 0.85 -0.8
1,363,435 + DDA3937_RS06050 0.85 -1.2
1,363,436 - DDA3937_RS06050 0.85 +0.2
1,363,436 - DDA3937_RS06050 0.85 -1.6
1,363,447 - DDA3937_RS06050 0.86 -1.1
1,363,492 + DDA3937_RS06050 0.89 -0.2
1,363,492 + DDA3937_RS06050 0.89 +1.4
1,363,658 + +0.3
1,363,658 + +0.0
1,363,699 + -0.4
1,363,705 - -1.2
1,363,755 - -2.1
1,363,755 - -1.6
1,363,897 + DDA3937_RS06055 0.13 +7.7
1,363,955 + DDA3937_RS06055 0.26 -0.1
1,363,955 + DDA3937_RS06055 0.26 -2.0
1,363,955 + DDA3937_RS06055 0.26 -0.5
1,363,956 - DDA3937_RS06055 0.26 -2.5
1,363,956 - DDA3937_RS06055 0.26 -0.6
1,364,058 + DDA3937_RS06055 0.48 -1.6
1,364,189 + DDA3937_RS06055 0.76 +0.3
1,364,195 + DDA3937_RS06055 0.77 -0.6
1,364,195 + DDA3937_RS06055 0.77 +0.0
1,364,196 - DDA3937_RS06055 0.77 +1.3
1,364,196 - DDA3937_RS06055 0.77 +1.0
1,364,196 - DDA3937_RS06055 0.77 -0.8
1,364,232 + DDA3937_RS06055 0.85 -1.0
1,364,233 - DDA3937_RS06055 0.85 -1.6
1,364,305 + +0.4
1,364,306 - -1.2
1,364,306 - -0.8
1,364,336 - -0.5
1,364,348 + -1.4
1,364,348 + +0.0
1,364,348 + -1.2
1,364,348 + +0.2
1,364,349 - +1.1
1,364,349 - +0.9
1,364,349 - -0.2
1,364,349 - +0.8
1,364,349 - +0.9
1,364,351 + +0.1
1,364,351 + +1.8
1,364,352 - -0.7
1,364,375 + DDA3937_RS06060 0.12 -2.0
1,364,375 + DDA3937_RS06060 0.12 +1.1
1,364,375 + DDA3937_RS06060 0.12 -0.3
1,364,375 + DDA3937_RS06060 0.12 +0.7
1,364,375 + DDA3937_RS06060 0.12 +1.1
1,364,375 + DDA3937_RS06060 0.12 +0.7
1,364,375 + DDA3937_RS06060 0.12 -0.1
1,364,376 - DDA3937_RS06060 0.12 +1.3
1,364,376 - DDA3937_RS06060 0.12 +0.9
1,364,376 - DDA3937_RS06060 0.12 +0.4
1,364,376 - DDA3937_RS06060 0.12 +0.5
1,364,376 - DDA3937_RS06060 0.12 -1.4
1,364,376 - DDA3937_RS06060 0.12 +0.8
1,364,376 - DDA3937_RS06060 0.12 +0.7
1,364,376 - DDA3937_RS06060 0.12 -0.8
1,364,376 - DDA3937_RS06060 0.12 +0.2
1,364,376 - DDA3937_RS06060 0.12 +0.0
1,364,379 + DDA3937_RS06060 0.12 -0.6
1,364,379 + DDA3937_RS06060 0.12 +1.2
1,364,379 + DDA3937_RS06060 0.12 +0.8
1,364,379 + DDA3937_RS06060 0.12 -1.4
1,364,379 + DDA3937_RS06060 0.12 +0.3
1,364,379 + DDA3937_RS06060 0.12 -0.5
1,364,379 + DDA3937_RS06060 0.12 -1.0
1,364,379 + DDA3937_RS06060 0.12 -1.6
1,364,380 - DDA3937_RS06060 0.12 +0.1
1,364,380 - DDA3937_RS06060 0.12 +0.0
1,364,380 - DDA3937_RS06060 0.12 -0.9
1,364,380 - DDA3937_RS06060 0.12 -0.7
1,364,380 - DDA3937_RS06060 0.12 -1.3
1,364,380 - DDA3937_RS06060 0.12 -0.1
1,364,380 - DDA3937_RS06060 0.12 +0.4
1,364,380 - DDA3937_RS06060 0.12 +0.5
1,364,380 - DDA3937_RS06060 0.12 -0.9
1,364,380 - DDA3937_RS06060 0.12 +1.8
1,364,380 - DDA3937_RS06060 0.12 -0.2
1,364,380 - DDA3937_RS06060 0.12 -0.7
1,364,380 - DDA3937_RS06060 0.12 +1.4
1,364,380 - DDA3937_RS06060 0.12 -2.6
1,364,380 - DDA3937_RS06060 0.12 +0.4
1,364,402 + +0.9
1,364,402 + DDA3937_RS06060 0.16 -0.1
1,364,402 + DDA3937_RS06060 0.16 +0.2
1,364,439 - DDA3937_RS06060 0.22 -1.0
1,364,449 + DDA3937_RS06060 0.24 -1.0
1,364,449 + DDA3937_RS06060 0.24 +0.6
1,364,450 - DDA3937_RS06060 0.24 +0.3
1,364,450 - DDA3937_RS06060 0.24 -0.8
1,364,450 - DDA3937_RS06060 0.24 -0.4
1,364,450 - DDA3937_RS06060 0.24 -0.9
1,364,450 - DDA3937_RS06060 0.24 +0.9
1,364,450 - DDA3937_RS06060 0.24 +0.6
1,364,450 - DDA3937_RS06060 0.24 +1.2
1,364,450 - DDA3937_RS06060 0.24 -1.0
1,364,450 - DDA3937_RS06060 0.24 -1.7
1,364,450 - DDA3937_RS06060 0.24 -1.2
1,364,450 - DDA3937_RS06060 0.24 +1.0
1,364,450 - DDA3937_RS06060 0.24 -3.4
1,364,639 + DDA3937_RS06060 0.54 -0.4
1,364,640 - DDA3937_RS06060 0.55 -1.9
1,364,690 + DDA3937_RS06060 0.63 -1.2
1,364,723 + DDA3937_RS06060 0.68 -0.2
1,364,723 + DDA3937_RS06060 0.68 -0.4
1,364,724 - DDA3937_RS06060 0.68 -0.6
1,364,799 - DDA3937_RS06060 0.80 -1.3
1,364,841 - DDA3937_RS06060 0.87 -0.0
1,364,851 + DDA3937_RS06060 0.89 +0.5
1,364,851 + DDA3937_RS06060 0.89 -0.6
1,364,851 + DDA3937_RS06060 0.89 -1.1
1,364,851 + DDA3937_RS06060 0.89 -2.3
1,364,852 - DDA3937_RS06060 0.89 -1.8
1,364,852 - DDA3937_RS06060 0.89 +0.2
1,364,852 - DDA3937_RS06060 0.89 -0.4
1,364,852 - DDA3937_RS06060 0.89 -2.2
1,364,852 - DDA3937_RS06060 0.89 -1.0
1,364,852 - DDA3937_RS06060 0.89 +0.3
1,364,889 - -0.4
1,364,904 + +0.4
1,364,904 + -0.9
1,364,905 - -0.1
1,364,912 + -0.3
1,364,912 + +0.2
1,364,913 - -0.1
1,364,913 - -1.0
1,364,919 - -1.0
1,364,919 - -1.0
1,364,973 + -0.4
1,364,973 + -0.7
1,364,973 + -2.1
1,364,973 + +1.2
1,364,973 + -0.9

Or see this region's nucleotide sequence