Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS05275

Experiment: Atlantic

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDDA3937_RS05270 and DDA3937_RS05275 are separated by 101 nucleotidesDDA3937_RS05275 and DDA3937_RS05280 are separated by 54 nucleotides DDA3937_RS05270: DDA3937_RS05270 - DSD1 family PLP-dependent enzyme, at 1,173,898 to 1,175,043 _RS05270 DDA3937_RS05275: DDA3937_RS05275 - LysR family transcriptional regulator, at 1,175,145 to 1,176,056 _RS05275 DDA3937_RS05280: DDA3937_RS05280 - MFS transporter, at 1,176,111 to 1,177,322 _RS05280 Position (kb) 1175 1176 1177Strain fitness (log2 ratio) -2 -1 0 1 2at 1174.276 kb on - strand, within DDA3937_RS05270at 1174.328 kb on + strand, within DDA3937_RS05270at 1174.328 kb on + strand, within DDA3937_RS05270at 1174.328 kb on + strand, within DDA3937_RS05270at 1174.329 kb on - strand, within DDA3937_RS05270at 1174.462 kb on - strand, within DDA3937_RS05270at 1174.741 kb on + strand, within DDA3937_RS05270at 1174.790 kb on + strand, within DDA3937_RS05270at 1175.072 kb on + strandat 1175.072 kb on + strandat 1175.460 kb on + strand, within DDA3937_RS05275at 1175.460 kb on + strand, within DDA3937_RS05275at 1175.460 kb on + strand, within DDA3937_RS05275at 1175.460 kb on + strand, within DDA3937_RS05275at 1175.461 kb on - strand, within DDA3937_RS05275at 1175.461 kb on - strand, within DDA3937_RS05275at 1175.483 kb on + strand, within DDA3937_RS05275at 1175.483 kb on + strand, within DDA3937_RS05275at 1175.483 kb on + strand, within DDA3937_RS05275at 1175.483 kb on + strand, within DDA3937_RS05275at 1175.483 kb on + strand, within DDA3937_RS05275at 1175.484 kb on - strand, within DDA3937_RS05275at 1175.484 kb on - strand, within DDA3937_RS05275at 1175.484 kb on - strand, within DDA3937_RS05275at 1175.484 kb on - strand, within DDA3937_RS05275at 1175.484 kb on - strand, within DDA3937_RS05275at 1175.659 kb on - strand, within DDA3937_RS05275at 1175.676 kb on - strand, within DDA3937_RS05275at 1175.795 kb on + strand, within DDA3937_RS05275at 1175.796 kb on - strand, within DDA3937_RS05275at 1176.060 kb on + strandat 1176.060 kb on + strandat 1176.060 kb on + strandat 1176.061 kb on - strandat 1176.064 kb on + strandat 1176.065 kb on - strandat 1176.065 kb on - strandat 1176.112 kb on + strandat 1176.113 kb on - strandat 1176.113 kb on - strandat 1176.113 kb on - strandat 1176.169 kb on + strandat 1176.169 kb on + strandat 1176.169 kb on + strandat 1176.170 kb on - strandat 1176.280 kb on + strand, within DDA3937_RS05280at 1176.281 kb on - strand, within DDA3937_RS05280at 1176.281 kb on - strand, within DDA3937_RS05280at 1176.311 kb on + strand, within DDA3937_RS05280at 1176.312 kb on - strand, within DDA3937_RS05280at 1176.312 kb on - strand, within DDA3937_RS05280at 1176.312 kb on - strand, within DDA3937_RS05280at 1176.334 kb on - strand, within DDA3937_RS05280at 1176.368 kb on + strand, within DDA3937_RS05280at 1176.495 kb on + strand, within DDA3937_RS05280at 1176.495 kb on + strand, within DDA3937_RS05280at 1176.495 kb on + strand, within DDA3937_RS05280at 1176.496 kb on - strand, within DDA3937_RS05280at 1176.496 kb on - strand, within DDA3937_RS05280at 1176.496 kb on - strand, within DDA3937_RS05280at 1176.496 kb on - strand, within DDA3937_RS05280at 1176.500 kb on + strand, within DDA3937_RS05280at 1176.500 kb on + strand, within DDA3937_RS05280at 1176.500 kb on + strand, within DDA3937_RS05280at 1176.501 kb on - strand, within DDA3937_RS05280at 1176.535 kb on + strand, within DDA3937_RS05280at 1176.536 kb on - strand, within DDA3937_RS05280at 1176.536 kb on - strand, within DDA3937_RS05280at 1176.674 kb on + strand, within DDA3937_RS05280at 1176.674 kb on + strand, within DDA3937_RS05280at 1176.675 kb on - strand, within DDA3937_RS05280at 1176.675 kb on - strand, within DDA3937_RS05280at 1176.752 kb on + strand, within DDA3937_RS05280at 1176.753 kb on - strand, within DDA3937_RS05280at 1176.829 kb on + strand, within DDA3937_RS05280at 1176.830 kb on - strand, within DDA3937_RS05280at 1176.880 kb on - strand, within DDA3937_RS05280at 1176.976 kb on + strand, within DDA3937_RS05280at 1176.976 kb on + strand, within DDA3937_RS05280at 1176.977 kb on - strand, within DDA3937_RS05280at 1176.988 kb on - strand, within DDA3937_RS05280at 1177.022 kb on + strand, within DDA3937_RS05280at 1177.022 kb on + strand, within DDA3937_RS05280at 1177.022 kb on + strand, within DDA3937_RS05280at 1177.022 kb on + strand, within DDA3937_RS05280at 1177.023 kb on - strand, within DDA3937_RS05280at 1177.023 kb on - strand, within DDA3937_RS05280at 1177.023 kb on - strand, within DDA3937_RS05280at 1177.023 kb on - strand, within DDA3937_RS05280at 1177.023 kb on - strand, within DDA3937_RS05280at 1177.026 kb on + strand, within DDA3937_RS05280at 1177.026 kb on + strand, within DDA3937_RS05280at 1177.026 kb on + strand, within DDA3937_RS05280at 1177.032 kb on - strand, within DDA3937_RS05280at 1177.032 kb on - strand, within DDA3937_RS05280at 1177.043 kb on - strand, within DDA3937_RS05280at 1177.045 kb on + strand, within DDA3937_RS05280at 1177.046 kb on - strand, within DDA3937_RS05280at 1177.046 kb on - strand, within DDA3937_RS05280at 1177.046 kb on - strand, within DDA3937_RS05280

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Atlantic
remove
1,174,276 - DDA3937_RS05270 0.33 +0.6
1,174,328 + DDA3937_RS05270 0.38 +0.9
1,174,328 + DDA3937_RS05270 0.38 +1.1
1,174,328 + DDA3937_RS05270 0.38 -1.5
1,174,329 - DDA3937_RS05270 0.38 -1.1
1,174,462 - DDA3937_RS05270 0.49 +0.0
1,174,741 + DDA3937_RS05270 0.74 -0.3
1,174,790 + DDA3937_RS05270 0.78 +0.1
1,175,072 + -1.1
1,175,072 + -0.5
1,175,460 + DDA3937_RS05275 0.35 +1.6
1,175,460 + DDA3937_RS05275 0.35 -1.6
1,175,460 + DDA3937_RS05275 0.35 +0.3
1,175,460 + DDA3937_RS05275 0.35 -0.9
1,175,461 - DDA3937_RS05275 0.35 -0.4
1,175,461 - DDA3937_RS05275 0.35 -0.5
1,175,483 + DDA3937_RS05275 0.37 -2.2
1,175,483 + DDA3937_RS05275 0.37 -0.9
1,175,483 + DDA3937_RS05275 0.37 +0.5
1,175,483 + DDA3937_RS05275 0.37 +0.4
1,175,483 + DDA3937_RS05275 0.37 -0.6
1,175,484 - DDA3937_RS05275 0.37 -0.4
1,175,484 - DDA3937_RS05275 0.37 -2.1
1,175,484 - DDA3937_RS05275 0.37 -0.2
1,175,484 - DDA3937_RS05275 0.37 -0.5
1,175,484 - DDA3937_RS05275 0.37 -0.7
1,175,659 - DDA3937_RS05275 0.56 -1.4
1,175,676 - DDA3937_RS05275 0.58 -0.4
1,175,795 + DDA3937_RS05275 0.71 -0.9
1,175,796 - DDA3937_RS05275 0.71 -1.2
1,176,060 + +0.3
1,176,060 + +0.6
1,176,060 + -0.4
1,176,061 - -0.5
1,176,064 + +0.3
1,176,065 - -1.4
1,176,065 - -2.6
1,176,112 + -0.2
1,176,113 - +0.1
1,176,113 - +0.5
1,176,113 - +0.3
1,176,169 + +2.7
1,176,169 + +0.7
1,176,169 + -1.4
1,176,170 - -0.4
1,176,280 + DDA3937_RS05280 0.14 +0.4
1,176,281 - DDA3937_RS05280 0.14 -2.4
1,176,281 - DDA3937_RS05280 0.14 -1.2
1,176,311 + DDA3937_RS05280 0.17 +0.1
1,176,312 - DDA3937_RS05280 0.17 +0.3
1,176,312 - DDA3937_RS05280 0.17 -1.2
1,176,312 - DDA3937_RS05280 0.17 -0.6
1,176,334 - DDA3937_RS05280 0.18 -0.4
1,176,368 + DDA3937_RS05280 0.21 -0.9
1,176,495 + DDA3937_RS05280 0.32 +0.6
1,176,495 + DDA3937_RS05280 0.32 +0.0
1,176,495 + DDA3937_RS05280 0.32 -1.9
1,176,496 - DDA3937_RS05280 0.32 -0.7
1,176,496 - DDA3937_RS05280 0.32 -1.5
1,176,496 - DDA3937_RS05280 0.32 -0.5
1,176,496 - DDA3937_RS05280 0.32 +0.0
1,176,500 + DDA3937_RS05280 0.32 +1.6
1,176,500 + DDA3937_RS05280 0.32 -1.1
1,176,500 + DDA3937_RS05280 0.32 -0.4
1,176,501 - DDA3937_RS05280 0.32 -1.0
1,176,535 + DDA3937_RS05280 0.35 -0.6
1,176,536 - DDA3937_RS05280 0.35 -0.4
1,176,536 - DDA3937_RS05280 0.35 +1.0
1,176,674 + DDA3937_RS05280 0.46 -2.2
1,176,674 + DDA3937_RS05280 0.46 +1.2
1,176,675 - DDA3937_RS05280 0.47 -2.4
1,176,675 - DDA3937_RS05280 0.47 -2.7
1,176,752 + DDA3937_RS05280 0.53 -0.1
1,176,753 - DDA3937_RS05280 0.53 -0.1
1,176,829 + DDA3937_RS05280 0.59 -0.3
1,176,830 - DDA3937_RS05280 0.59 -1.4
1,176,880 - DDA3937_RS05280 0.63 +0.4
1,176,976 + DDA3937_RS05280 0.71 +0.5
1,176,976 + DDA3937_RS05280 0.71 -2.7
1,176,977 - DDA3937_RS05280 0.71 -2.2
1,176,988 - DDA3937_RS05280 0.72 -0.5
1,177,022 + DDA3937_RS05280 0.75 +0.8
1,177,022 + DDA3937_RS05280 0.75 -0.2
1,177,022 + DDA3937_RS05280 0.75 -2.1
1,177,022 + DDA3937_RS05280 0.75 -0.7
1,177,023 - DDA3937_RS05280 0.75 -0.4
1,177,023 - DDA3937_RS05280 0.75 -1.1
1,177,023 - DDA3937_RS05280 0.75 +0.4
1,177,023 - DDA3937_RS05280 0.75 -1.5
1,177,023 - DDA3937_RS05280 0.75 -2.0
1,177,026 + DDA3937_RS05280 0.75 +0.7
1,177,026 + DDA3937_RS05280 0.75 -2.0
1,177,026 + DDA3937_RS05280 0.75 -0.4
1,177,032 - DDA3937_RS05280 0.76 +0.3
1,177,032 - DDA3937_RS05280 0.76 -2.7
1,177,043 - DDA3937_RS05280 0.77 +0.7
1,177,045 + DDA3937_RS05280 0.77 +0.7
1,177,046 - DDA3937_RS05280 0.77 +0.3
1,177,046 - DDA3937_RS05280 0.77 -0.1
1,177,046 - DDA3937_RS05280 0.77 -1.3

Or see this region's nucleotide sequence