Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS05175

Experiment: Atlantic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS05165 and DDA3937_RS05170 are separated by 148 nucleotidesDDA3937_RS05170 and DDA3937_RS05175 are separated by 3 nucleotidesDDA3937_RS05175 and DDA3937_RS05180 are separated by 3 nucleotides DDA3937_RS05165: DDA3937_RS05165 - UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase, at 1,152,992 to 1,154,014 _RS05165 DDA3937_RS05170: DDA3937_RS05170 - 3-hydroxyacyl-ACP dehydratase FabZ, at 1,154,163 to 1,154,618 _RS05170 DDA3937_RS05175: DDA3937_RS05175 - acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase, at 1,154,622 to 1,155,410 _RS05175 DDA3937_RS05180: DDA3937_RS05180 - lipid-A-disaccharide synthase, at 1,155,414 to 1,156,562 _RS05180 Position (kb) 1154 1155 1156Strain fitness (log2 ratio) -1 0 1at 1155.413 kb on + strandat 1155.413 kb on + strandat 1155.413 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Atlantic
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1,155,413 + -0.3
1,155,413 + +0.0
1,155,413 + -1.3

Or see this region's nucleotide sequence