Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS04995

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
1,119,483	+		DDA3937_RS04990	0.43	-0.6
1,119,518	+		DDA3937_RS04990	0.45	+0.4
1,119,519	-		DDA3937_RS04990	0.45	+1.3
1,119,519	-		DDA3937_RS04990	0.45	-0.7
1,119,521	-		DDA3937_RS04990	0.45	-0.6
1,119,548	+		DDA3937_RS04990	0.47	-2.0
1,119,549	-		DDA3937_RS04990	0.48	+0.0
1,119,549	-		DDA3937_RS04990	0.48	-0.1
1,119,549	-		DDA3937_RS04990	0.48	-0.7
1,119,549	-		DDA3937_RS04990	0.48	-0.2
1,119,587	+		DDA3937_RS04990	0.50	-0.8
1,119,587	+		DDA3937_RS04990	0.50	+1.1
1,119,587	+		DDA3937_RS04990	0.50	-0.4
1,120,015	+		DDA3937_RS04990	0.83	+1.6
1,120,060	+		DDA3937_RS04990	0.86	-0.5
1,120,061	-		DDA3937_RS04990	0.86	-0.7
1,120,088	+		DDA3937_RS04990	0.88	-1.4
1,120,089	-		DDA3937_RS04990	0.88	-2.6
1,120,093	-		DDA3937_RS04990	0.89	+0.3
1,120,093	-		DDA3937_RS04990	0.89	-0.4
1,120,093	-		DDA3937_RS04990	0.89	+0.7
1,120,093	-		DDA3937_RS04990	0.89	-0.1
1,120,157	+				-0.8
1,120,158	-				-1.5
1,120,158	-				-0.5
1,120,158	-				-0.2
1,120,192	+				+0.3
1,120,192	+				-0.5
1,120,192	+				-0.5
1,120,192	+				+0.0
1,120,192	+				-2.1
1,120,193	-				+0.2
1,120,193	-				-0.7
1,120,193	-				-0.3
1,120,193	-				-0.4
1,120,193	-				-0.3
1,120,193	-				+0.0
1,120,193	-				+1.0
1,120,193	-				-0.4
1,120,193	-				+0.4
1,120,193	-				-2.5
1,120,229	+				-0.4
1,120,230	-				-0.7
1,120,230	-				+0.1
1,120,230	-				-0.0
1,120,232	+				-0.4
1,120,232	+				-2.3
1,120,232	+				+0.9
1,120,233	-				-2.3
1,120,233	-				-1.7
1,120,233	-				-1.2
1,120,233	-				-0.4
1,120,233	-				-0.6
1,120,233	-				+0.0
1,120,233	-				+0.8
1,120,296	+				-1.1
1,120,337	-				-0.3
1,120,356	-				+0.8
1,120,405	-				+0.0
1,120,407	+				-0.8
1,120,408	-				-1.0
1,120,408	-				+0.3
1,120,506	+				+0.0
1,120,506	+				-0.7
1,120,507	-				-1.6
1,120,510	-				-1.6
1,120,533	+				-1.0
1,120,607	+		DDA3937_RS04995	0.11	-1.7
1,120,646	+		DDA3937_RS04995	0.14	+3.7
1,120,646	+		DDA3937_RS04995	0.14	-0.8
1,120,712	-		DDA3937_RS04995	0.20	+0.6
1,120,795	+		DDA3937_RS04995	0.26	-0.1
1,120,795	+		DDA3937_RS04995	0.26	-1.6
1,120,818	+		DDA3937_RS04995	0.28	-0.0
1,120,819	-		DDA3937_RS04995	0.28	+0.3
1,120,819	-		DDA3937_RS04995	0.28	-1.0
1,120,819	-		DDA3937_RS04995	0.28	-0.1
1,120,838	-		DDA3937_RS04995	0.30	-0.4
1,120,896	-		DDA3937_RS04995	0.34	-1.0
1,120,955	+		DDA3937_RS04995	0.39	-0.5
1,120,956	-		DDA3937_RS04995	0.39	-1.4
1,120,956	-		DDA3937_RS04995	0.39	+0.5
1,120,961	-		DDA3937_RS04995	0.40	-1.7
1,120,961	-		DDA3937_RS04995	0.40	+1.6
1,121,171	+		DDA3937_RS04995	0.57	-1.3
1,121,171	+		DDA3937_RS04995	0.57	+0.0
1,121,172	-		DDA3937_RS04995	0.57	-1.3
1,121,172	-		DDA3937_RS04995	0.57	+1.8
1,121,348	+		DDA3937_RS04995	0.71	+1.3
1,121,398	-		DDA3937_RS04995	0.75	+0.2
1,121,487	+		DDA3937_RS04995	0.82	-0.9
1,121,487	+		DDA3937_RS04995	0.82	+0.5
1,121,487	+		DDA3937_RS04995	0.82	+2.9
1,121,488	-		DDA3937_RS04995	0.82	-0.8
1,121,566	+		DDA3937_RS04995	0.89	+0.3
1,121,597	-				-0.5
1,121,684	+				-0.6
1,121,684	+				-1.0
1,121,685	-				-1.7
1,121,706	-				+0.4
1,121,721	+				-1.4
1,121,772	-				+0.0
1,121,772	-				-1.9
1,121,842	+		DDA3937_RS05000	0.71	-0.7
1,121,872	-				-1.7
1,121,872	-				-0.5
1,121,872	-				+1.9
1,121,883	+				+1.6
1,121,884	-				+0.0
1,121,895	-				+1.0
1,122,035	+				-1.2
1,122,040	+				+1.4
1,122,041	-				-0.8
1,122,099	+				-1.8
1,122,099	+				+1.1
1,122,099	+				-1.3
1,122,099	+				+1.7
1,122,100	-				-1.3
1,122,100	-				+0.3
1,122,100	-				-0.6
1,122,124	+				+0.0
1,122,162	+				-1.0
1,122,162	+				+0.6
1,122,162	+				+2.6
1,122,168	+				+0.7
1,122,168	+				-0.0
1,122,168	+				-2.7
1,122,168	+				-1.2
1,122,169	-				+2.3
1,122,169	-				+0.1
1,122,211	+				-0.2
1,122,211	+				+0.5
1,122,212	-				-1.5
1,122,212	-				-2.8
1,122,240	-				-1.4
1,122,283	+				-1.5
1,122,283	+				+1.6
1,122,283	+				-0.2
1,122,284	-				-1.3
1,122,285	+				-1.7
1,122,285	+				-2.8
1,122,285	+				+0.1
1,122,286	-				+0.0
1,122,286	-				-1.7
1,122,286	-				+0.3
1,122,286	-				-0.8
1,122,286	-				-1.1
1,122,354	+		DDA3937_RS05010	0.14	-0.4
1,122,354	+		DDA3937_RS05010	0.14	+1.9
1,122,354	+		DDA3937_RS05010	0.14	+1.6
1,122,354	+		DDA3937_RS05010	0.14	+0.0
1,122,355	-		DDA3937_RS05010	0.14	-2.2
1,122,355	-		DDA3937_RS05010	0.14	-0.8
1,122,355	-		DDA3937_RS05010	0.14	+1.7
1,122,410	-		DDA3937_RS05010	0.19	+1.0
1,122,445	-		DDA3937_RS05010	0.22	+3.0
1,122,522	+		DDA3937_RS05010	0.29	-0.2
1,122,523	-		DDA3937_RS05010	0.29	-1.2
1,122,543	+		DDA3937_RS05010	0.31	+0.0
1,122,553	+		DDA3937_RS05010	0.31	-2.2
1,122,553	+		DDA3937_RS05010	0.31	-2.4
1,122,553	+		DDA3937_RS05010	0.31	+0.6
1,122,553	+		DDA3937_RS05010	0.31	-0.7
1,122,553	+		DDA3937_RS05010	0.31	-2.5
1,122,553	+		DDA3937_RS05010	0.31	-1.1
1,122,553	+		DDA3937_RS05010	0.31	-0.7
1,122,553	+		DDA3937_RS05010	0.31	-0.7
1,122,553	+		DDA3937_RS05010	0.31	-2.3
1,122,554	-		DDA3937_RS05010	0.32	-0.1
1,122,554	-		DDA3937_RS05010	0.32	-2.8
1,122,554	-		DDA3937_RS05010	0.32	+0.9
1,122,554	-		DDA3937_RS05010	0.32	-2.1
1,122,610	+		DDA3937_RS05010	0.36	+0.0
1,122,610	+		DDA3937_RS05010	0.36	-0.7
1,122,610	+		DDA3937_RS05010	0.36	-0.0
1,122,611	-		DDA3937_RS05010	0.36	-1.4
1,122,611	-		DDA3937_RS05010	0.36	-0.7
1,122,611	-		DDA3937_RS05010	0.36	-1.5
1,122,611	-		DDA3937_RS05010	0.36	-1.8
1,122,611	-		DDA3937_RS05010	0.36	+0.2
1,122,611	-		DDA3937_RS05010	0.36	+0.4
1,122,664	+		DDA3937_RS05010	0.41	-1.4
1,122,664	+		DDA3937_RS05010	0.41	+0.3
1,122,665	-		DDA3937_RS05010	0.41	-0.1
1,122,665	-		DDA3937_RS05010	0.41	+1.6
1,122,665	-		DDA3937_RS05010	0.41	+0.3
1,122,665	-		DDA3937_RS05010	0.41	+0.0