Experiment: Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS02030 and DDA3937_RS02035 are separated by 2 nucleotides DDA3937_RS02035 and DDA3937_RS02040 overlap by 4 nucleotides DDA3937_RS02040 and DDA3937_RS02045 overlap by 8 nucleotides
DDA3937_RS02030: DDA3937_RS02030 - integrase domain-containing protein, at 458,532 to 459,413
_RS02030
DDA3937_RS02035: DDA3937_RS02035 - AlpA family transcriptional regulator, at 459,416 to 459,616
_RS02035
DDA3937_RS02040: DDA3937_RS02040 - ash family protein, at 459,613 to 460,152
_RS02040
DDA3937_RS02045: DDA3937_RS02045 - AAA family ATPase, at 460,145 to 462,190
_RS02045
Position (kb) 458
459
460 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 457.532 kb on - strand at 457.605 kb on + strand at 457.606 kb on - strand at 457.656 kb on - strand at 457.656 kb on - strand at 457.686 kb on - strand at 457.686 kb on - strand at 457.695 kb on + strand at 457.695 kb on + strand at 457.734 kb on + strand at 457.734 kb on + strand at 457.734 kb on + strand at 457.735 kb on - strand at 457.735 kb on - strand at 457.766 kb on + strand at 457.766 kb on + strand at 457.775 kb on + strand at 457.804 kb on + strand at 457.804 kb on + strand at 457.805 kb on - strand at 457.805 kb on - strand at 457.805 kb on - strand at 457.805 kb on - strand at 457.805 kb on - strand at 457.806 kb on + strand at 457.806 kb on + strand at 457.806 kb on + strand at 457.806 kb on + strand at 457.806 kb on + strand at 457.806 kb on + strand at 457.806 kb on + strand at 457.807 kb on - strand at 457.807 kb on - strand at 457.807 kb on - strand at 457.807 kb on - strand at 457.807 kb on - strand at 457.817 kb on + strand at 457.895 kb on + strand at 457.915 kb on - strand at 457.915 kb on - strand at 457.961 kb on + strand at 457.962 kb on - strand at 457.965 kb on + strand at 457.966 kb on - strand at 457.983 kb on + strand at 457.983 kb on + strand at 457.998 kb on + strand at 457.998 kb on + strand at 457.998 kb on + strand at 457.998 kb on + strand at 457.998 kb on + strand at 457.999 kb on - strand at 458.017 kb on + strand at 458.017 kb on + strand at 458.048 kb on + strand at 458.049 kb on - strand at 458.067 kb on + strand at 458.114 kb on - strand at 458.114 kb on - strand at 458.114 kb on - strand at 458.114 kb on - strand at 458.114 kb on - strand at 458.134 kb on + strand at 458.134 kb on + strand at 458.134 kb on + strand at 458.147 kb on + strand at 458.148 kb on - strand at 458.148 kb on - strand at 458.217 kb on - strand at 458.333 kb on + strand at 458.464 kb on - strand at 458.493 kb on - strand at 458.493 kb on - strand at 458.525 kb on + strand at 458.525 kb on + strand at 458.588 kb on + strand at 458.612 kb on + strand at 458.669 kb on - strand, within DDA3937_RS02030 at 458.691 kb on - strand, within DDA3937_RS02030 at 458.700 kb on + strand, within DDA3937_RS02030 at 458.700 kb on + strand, within DDA3937_RS02030 at 458.700 kb on + strand, within DDA3937_RS02030 at 458.700 kb on + strand, within DDA3937_RS02030 at 458.700 kb on + strand, within DDA3937_RS02030 at 458.700 kb on + strand, within DDA3937_RS02030 at 458.700 kb on + strand, within DDA3937_RS02030 at 458.700 kb on + strand, within DDA3937_RS02030 at 458.700 kb on + strand, within DDA3937_RS02030 at 458.701 kb on - strand, within DDA3937_RS02030 at 458.701 kb on - strand, within DDA3937_RS02030 at 458.701 kb on - strand, within DDA3937_RS02030 at 458.701 kb on - strand, within DDA3937_RS02030 at 458.701 kb on - strand, within DDA3937_RS02030 at 458.701 kb on - strand, within DDA3937_RS02030 at 458.701 kb on - strand, within DDA3937_RS02030 at 458.701 kb on - strand, within DDA3937_RS02030 at 458.701 kb on - strand, within DDA3937_RS02030 at 458.705 kb on - strand, within DDA3937_RS02030 at 458.705 kb on - strand, within DDA3937_RS02030 at 458.868 kb on + strand, within DDA3937_RS02030 at 458.868 kb on + strand, within DDA3937_RS02030 at 458.868 kb on + strand, within DDA3937_RS02030 at 458.868 kb on + strand, within DDA3937_RS02030 at 458.868 kb on + strand, within DDA3937_RS02030 at 458.868 kb on + strand, within DDA3937_RS02030 at 458.868 kb on + strand, within DDA3937_RS02030 at 458.868 kb on + strand, within DDA3937_RS02030 at 458.868 kb on + strand at 458.868 kb on + strand, within DDA3937_RS02030 at 458.868 kb on + strand, within DDA3937_RS02030 at 458.868 kb on + strand, within DDA3937_RS02030 at 458.868 kb on + strand, within DDA3937_RS02030 at 458.868 kb on + strand, within DDA3937_RS02030 at 458.868 kb on + strand, within DDA3937_RS02030 at 458.868 kb on + strand, within DDA3937_RS02030 at 458.868 kb on + strand, within DDA3937_RS02030 at 458.868 kb on + strand, within DDA3937_RS02030 at 458.868 kb on + strand, within DDA3937_RS02030 at 458.868 kb on + strand, within DDA3937_RS02030 at 458.868 kb on + strand, within DDA3937_RS02030 at 458.868 kb on + strand, within DDA3937_RS02030 at 458.869 kb on - strand, within DDA3937_RS02030 at 458.869 kb on - strand, within DDA3937_RS02030 at 458.869 kb on - strand, within DDA3937_RS02030 at 458.869 kb on - strand, within DDA3937_RS02030 at 458.869 kb on - strand, within DDA3937_RS02030 at 458.869 kb on - strand, within DDA3937_RS02030 at 458.869 kb on - strand, within DDA3937_RS02030 at 458.869 kb on - strand, within DDA3937_RS02030 at 458.869 kb on - strand at 458.869 kb on - strand, within DDA3937_RS02030 at 458.869 kb on - strand, within DDA3937_RS02030 at 458.869 kb on - strand, within DDA3937_RS02030 at 458.869 kb on - strand, within DDA3937_RS02030 at 458.869 kb on - strand, within DDA3937_RS02030 at 458.869 kb on - strand, within DDA3937_RS02030 at 458.869 kb on - strand, within DDA3937_RS02030 at 459.112 kb on + strand, within DDA3937_RS02030 at 459.113 kb on - strand, within DDA3937_RS02030 at 459.161 kb on + strand, within DDA3937_RS02030 at 459.171 kb on + strand, within DDA3937_RS02030 at 459.391 kb on - strand at 459.391 kb on - strand at 459.411 kb on + strand at 459.412 kb on - strand at 459.485 kb on + strand, within DDA3937_RS02035 at 459.485 kb on + strand, within DDA3937_RS02035 at 459.485 kb on + strand, within DDA3937_RS02035 at 459.485 kb on + strand, within DDA3937_RS02035 at 459.485 kb on + strand, within DDA3937_RS02035 at 459.486 kb on - strand, within DDA3937_RS02035 at 459.486 kb on - strand, within DDA3937_RS02035 at 459.486 kb on - strand, within DDA3937_RS02035 at 459.486 kb on - strand, within DDA3937_RS02035 at 459.486 kb on - strand, within DDA3937_RS02035 at 459.489 kb on - strand, within DDA3937_RS02035 at 459.653 kb on - strand at 459.653 kb on - strand at 459.654 kb on + strand at 459.654 kb on + strand at 459.655 kb on - strand at 459.655 kb on - strand at 459.729 kb on - strand, within DDA3937_RS02040 at 459.729 kb on - strand, within DDA3937_RS02040 at 459.729 kb on - strand, within DDA3937_RS02040 at 459.729 kb on - strand, within DDA3937_RS02040 at 459.729 kb on - strand, within DDA3937_RS02040 at 459.729 kb on - strand, within DDA3937_RS02040 at 459.729 kb on - strand, within DDA3937_RS02040 at 459.729 kb on - strand, within DDA3937_RS02040 at 459.729 kb on - strand, within DDA3937_RS02040 at 459.753 kb on - strand, within DDA3937_RS02040 at 459.852 kb on + strand, within DDA3937_RS02040 at 459.929 kb on + strand, within DDA3937_RS02040 at 459.929 kb on + strand, within DDA3937_RS02040 at 459.930 kb on - strand, within DDA3937_RS02040 at 459.930 kb on - strand, within DDA3937_RS02040 at 459.930 kb on - strand, within DDA3937_RS02040 at 459.930 kb on - strand, within DDA3937_RS02040 at 459.930 kb on - strand, within DDA3937_RS02040 at 459.933 kb on + strand, within DDA3937_RS02040 at 459.933 kb on + strand, within DDA3937_RS02040 at 459.933 kb on + strand, within DDA3937_RS02040 at 459.934 kb on - strand, within DDA3937_RS02040 at 459.975 kb on + strand, within DDA3937_RS02040 at 459.975 kb on + strand, within DDA3937_RS02040 at 459.976 kb on - strand, within DDA3937_RS02040 at 459.976 kb on - strand, within DDA3937_RS02040 at 459.976 kb on - strand, within DDA3937_RS02040 at 459.979 kb on + strand, within DDA3937_RS02040 at 459.979 kb on + strand, within DDA3937_RS02040 at 459.979 kb on + strand, within DDA3937_RS02040 at 459.979 kb on + strand, within DDA3937_RS02040 at 459.979 kb on + strand, within DDA3937_RS02040 at 459.979 kb on + strand, within DDA3937_RS02040 at 459.979 kb on + strand, within DDA3937_RS02040 at 459.979 kb on + strand, within DDA3937_RS02040 at 459.979 kb on + strand, within DDA3937_RS02040 at 459.979 kb on + strand, within DDA3937_RS02040 at 459.979 kb on + strand, within DDA3937_RS02040 at 459.979 kb on + strand, within DDA3937_RS02040 at 459.979 kb on + strand, within DDA3937_RS02040 at 459.979 kb on + strand, within DDA3937_RS02040 at 459.980 kb on - strand, within DDA3937_RS02040 at 459.980 kb on - strand, within DDA3937_RS02040 at 459.980 kb on - strand, within DDA3937_RS02040 at 459.980 kb on - strand, within DDA3937_RS02040 at 459.980 kb on - strand, within DDA3937_RS02040 at 459.980 kb on - strand, within DDA3937_RS02040 at 459.980 kb on - strand, within DDA3937_RS02040 at 459.980 kb on - strand, within DDA3937_RS02040 at 459.980 kb on - strand, within DDA3937_RS02040 at 459.980 kb on - strand, within DDA3937_RS02040 at 459.980 kb on - strand, within DDA3937_RS02040 at 459.980 kb on - strand, within DDA3937_RS02040 at 459.980 kb on - strand, within DDA3937_RS02040 at 459.980 kb on - strand, within DDA3937_RS02040 at 459.980 kb on - strand, within DDA3937_RS02040 at 459.980 kb on - strand, within DDA3937_RS02040 at 459.980 kb on - strand, within DDA3937_RS02040 at 459.982 kb on - strand, within DDA3937_RS02040 at 460.092 kb on - strand, within DDA3937_RS02040 at 460.150 kb on + strand at 460.150 kb on + strand at 460.151 kb on - strand at 460.151 kb on - strand at 460.212 kb on + strand at 460.212 kb on + strand at 460.212 kb on + strand at 460.212 kb on + strand at 460.212 kb on + strand at 460.212 kb on + strand at 460.213 kb on - strand at 460.213 kb on - strand at 460.213 kb on - strand at 460.213 kb on - strand at 460.213 kb on - strand at 460.216 kb on + strand at 460.216 kb on + strand at 460.216 kb on + strand at 460.217 kb on - strand at 460.217 kb on - strand at 460.220 kb on + strand at 460.220 kb on + strand at 460.220 kb on + strand at 460.221 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Atlantic remove 457,532 - +0.4 457,605 + +0.3 457,606 - -1.5 457,656 - +0.2 457,656 - -0.9 457,686 - +0.3 457,686 - -0.1 457,695 + -1.6 457,695 + +0.8 457,734 + -0.0 457,734 + +1.0 457,734 + -0.6 457,735 - -0.4 457,735 - -0.5 457,766 + +0.8 457,766 + -1.9 457,775 + +1.4 457,804 + -0.2 457,804 + +0.1 457,805 - +1.5 457,805 - -2.3 457,805 - +0.7 457,805 - -1.7 457,805 - +0.1 457,806 + +0.9 457,806 + -0.6 457,806 + +0.3 457,806 + -2.1 457,806 + +0.1 457,806 + -0.5 457,806 + -0.6 457,807 - -0.8 457,807 - -0.7 457,807 - +0.1 457,807 - -0.6 457,807 - +1.2 457,817 + -1.0 457,895 + -1.1 457,915 - +0.0 457,915 - +0.9 457,961 + -2.4 457,962 - -1.3 457,965 + -1.0 457,966 - -0.7 457,983 + +0.1 457,983 + +0.1 457,998 + +0.3 457,998 + -2.1 457,998 + +0.5 457,998 + -0.7 457,998 + -0.0 457,999 - +2.9 458,017 + +0.5 458,017 + +0.4 458,048 + +0.4 458,049 - +0.6 458,067 + -0.5 458,114 - -0.7 458,114 - -1.1 458,114 - +1.3 458,114 - +0.3 458,114 - -0.5 458,134 + -1.1 458,134 + -0.6 458,134 + -0.1 458,147 + -1.9 458,148 - -0.5 458,148 - -1.0 458,217 - -0.3 458,333 + +0.9 458,464 - -1.2 458,493 - +0.5 458,493 - -1.6 458,525 + +0.3 458,525 + +1.9 458,588 + +0.2 458,612 + +0.3 458,669 - DDA3937_RS02030 0.16 +0.0 458,691 - DDA3937_RS02030 0.18 +1.5 458,700 + DDA3937_RS02030 0.19 +1.1 458,700 + DDA3937_RS02030 0.19 +3.3 458,700 + DDA3937_RS02030 0.19 -1.1 458,700 + DDA3937_RS02030 0.19 +0.8 458,700 + DDA3937_RS02030 0.19 -0.0 458,700 + DDA3937_RS02030 0.19 -0.9 458,700 + DDA3937_RS02030 0.19 +0.5 458,700 + DDA3937_RS02030 0.19 -1.2 458,700 + DDA3937_RS02030 0.19 +0.3 458,701 - DDA3937_RS02030 0.19 +0.4 458,701 - DDA3937_RS02030 0.19 +0.3 458,701 - DDA3937_RS02030 0.19 -2.4 458,701 - DDA3937_RS02030 0.19 +0.3 458,701 - DDA3937_RS02030 0.19 -0.4 458,701 - DDA3937_RS02030 0.19 +4.8 458,701 - DDA3937_RS02030 0.19 +0.3 458,701 - DDA3937_RS02030 0.19 -0.6 458,701 - DDA3937_RS02030 0.19 +0.4 458,705 - DDA3937_RS02030 0.20 -2.4 458,705 - DDA3937_RS02030 0.20 +1.1 458,868 + DDA3937_RS02030 0.38 +1.0 458,868 + DDA3937_RS02030 0.38 +0.3 458,868 + DDA3937_RS02030 0.38 -0.3 458,868 + DDA3937_RS02030 0.38 -1.0 458,868 + DDA3937_RS02030 0.38 +2.9 458,868 + DDA3937_RS02030 0.38 -2.2 458,868 + DDA3937_RS02030 0.38 -2.1 458,868 + DDA3937_RS02030 0.38 +1.0 458,868 + +0.3 458,868 + DDA3937_RS02030 0.38 +3.2 458,868 + DDA3937_RS02030 0.38 -2.4 458,868 + DDA3937_RS02030 0.38 -1.5 458,868 + DDA3937_RS02030 0.38 -0.5 458,868 + DDA3937_RS02030 0.38 -0.1 458,868 + DDA3937_RS02030 0.38 -0.1 458,868 + DDA3937_RS02030 0.38 +0.5 458,868 + DDA3937_RS02030 0.38 +1.3 458,868 + DDA3937_RS02030 0.38 -0.5 458,868 + DDA3937_RS02030 0.38 -0.5 458,868 + DDA3937_RS02030 0.38 +2.7 458,868 + DDA3937_RS02030 0.38 -1.7 458,868 + DDA3937_RS02030 0.38 +0.9 458,869 - DDA3937_RS02030 0.38 +2.7 458,869 - DDA3937_RS02030 0.38 -0.8 458,869 - DDA3937_RS02030 0.38 +0.5 458,869 - DDA3937_RS02030 0.38 +2.0 458,869 - DDA3937_RS02030 0.38 -1.0 458,869 - DDA3937_RS02030 0.38 -0.6 458,869 - DDA3937_RS02030 0.38 -0.6 458,869 - DDA3937_RS02030 0.38 +0.2 458,869 - +2.6 458,869 - DDA3937_RS02030 0.38 -0.5 458,869 - DDA3937_RS02030 0.38 -1.4 458,869 - DDA3937_RS02030 0.38 -2.0 458,869 - DDA3937_RS02030 0.38 -0.4 458,869 - DDA3937_RS02030 0.38 -0.9 458,869 - DDA3937_RS02030 0.38 -1.1 458,869 - DDA3937_RS02030 0.38 +2.2 459,112 + DDA3937_RS02030 0.66 -2.5 459,113 - DDA3937_RS02030 0.66 -1.7 459,161 + DDA3937_RS02030 0.71 +0.4 459,171 + DDA3937_RS02030 0.72 -1.5 459,391 - -0.2 459,391 - -1.1 459,411 + -1.3 459,412 - -0.2 459,485 + DDA3937_RS02035 0.34 -1.5 459,485 + DDA3937_RS02035 0.34 -1.2 459,485 + DDA3937_RS02035 0.34 +1.0 459,485 + DDA3937_RS02035 0.34 -0.0 459,485 + DDA3937_RS02035 0.34 -0.2 459,486 - DDA3937_RS02035 0.35 +0.9 459,486 - DDA3937_RS02035 0.35 -1.7 459,486 - DDA3937_RS02035 0.35 -0.9 459,486 - DDA3937_RS02035 0.35 -1.1 459,486 - DDA3937_RS02035 0.35 +0.0 459,489 - DDA3937_RS02035 0.36 +0.4 459,653 - +0.7 459,653 - -1.1 459,654 + -1.2 459,654 + +0.4 459,655 - -0.5 459,655 - -1.8 459,729 - DDA3937_RS02040 0.21 -1.6 459,729 - DDA3937_RS02040 0.21 +0.2 459,729 - DDA3937_RS02040 0.21 -0.1 459,729 - DDA3937_RS02040 0.21 +1.0 459,729 - DDA3937_RS02040 0.21 -0.9 459,729 - DDA3937_RS02040 0.21 +0.5 459,729 - DDA3937_RS02040 0.21 -0.7 459,729 - DDA3937_RS02040 0.21 -0.9 459,729 - DDA3937_RS02040 0.21 -1.6 459,753 - DDA3937_RS02040 0.26 -2.1 459,852 + DDA3937_RS02040 0.44 +0.3 459,929 + DDA3937_RS02040 0.59 +0.4 459,929 + DDA3937_RS02040 0.59 -0.1 459,930 - DDA3937_RS02040 0.59 +0.9 459,930 - DDA3937_RS02040 0.59 -0.8 459,930 - DDA3937_RS02040 0.59 +2.4 459,930 - DDA3937_RS02040 0.59 -0.8 459,930 - DDA3937_RS02040 0.59 +0.8 459,933 + DDA3937_RS02040 0.59 +0.1 459,933 + DDA3937_RS02040 0.59 +0.6 459,933 + DDA3937_RS02040 0.59 -1.8 459,934 - DDA3937_RS02040 0.59 -0.2 459,975 + DDA3937_RS02040 0.67 -2.1 459,975 + DDA3937_RS02040 0.67 +0.9 459,976 - DDA3937_RS02040 0.67 -0.3 459,976 - DDA3937_RS02040 0.67 -2.0 459,976 - DDA3937_RS02040 0.67 +0.3 459,979 + DDA3937_RS02040 0.68 +0.2 459,979 + DDA3937_RS02040 0.68 +0.4 459,979 + DDA3937_RS02040 0.68 -1.0 459,979 + DDA3937_RS02040 0.68 -2.4 459,979 + DDA3937_RS02040 0.68 -1.5 459,979 + DDA3937_RS02040 0.68 +1.2 459,979 + DDA3937_RS02040 0.68 -0.1 459,979 + DDA3937_RS02040 0.68 +0.5 459,979 + DDA3937_RS02040 0.68 -0.0 459,979 + DDA3937_RS02040 0.68 +0.2 459,979 + DDA3937_RS02040 0.68 -1.8 459,979 + DDA3937_RS02040 0.68 +0.2 459,979 + DDA3937_RS02040 0.68 -1.4 459,979 + DDA3937_RS02040 0.68 -0.5 459,980 - DDA3937_RS02040 0.68 -1.8 459,980 - DDA3937_RS02040 0.68 -0.5 459,980 - DDA3937_RS02040 0.68 -0.2 459,980 - DDA3937_RS02040 0.68 -2.2 459,980 - DDA3937_RS02040 0.68 +0.5 459,980 - DDA3937_RS02040 0.68 -1.3 459,980 - DDA3937_RS02040 0.68 -0.1 459,980 - DDA3937_RS02040 0.68 -0.4 459,980 - DDA3937_RS02040 0.68 -1.0 459,980 - DDA3937_RS02040 0.68 -1.5 459,980 - DDA3937_RS02040 0.68 -1.0 459,980 - DDA3937_RS02040 0.68 +0.9 459,980 - DDA3937_RS02040 0.68 -0.6 459,980 - DDA3937_RS02040 0.68 -0.1 459,980 - DDA3937_RS02040 0.68 +1.0 459,980 - DDA3937_RS02040 0.68 -1.1 459,980 - DDA3937_RS02040 0.68 -1.7 459,982 - DDA3937_RS02040 0.68 +0.5 460,092 - DDA3937_RS02040 0.89 +0.1 460,150 + -0.9 460,150 + -2.0 460,151 - +0.2 460,151 - -0.6 460,212 + +1.2 460,212 + -1.3 460,212 + +0.0 460,212 + -1.0 460,212 + -1.4 460,212 + +1.2 460,213 - -0.5 460,213 - -1.1 460,213 - -0.7 460,213 - -1.4 460,213 - +0.2 460,216 + -0.4 460,216 + +0.3 460,216 + -2.0 460,217 - -1.3 460,217 - -0.7 460,220 + -1.7 460,220 + +0.0 460,220 + -1.6 460,221 - -1.2
Or see this region's nucleotide sequence