Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS01850

Experiment: Atlantic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS01845 and DDA3937_RS01850 are separated by 81 nucleotidesDDA3937_RS01850 and DDA3937_RS01855 are separated by 193 nucleotides DDA3937_RS01845: DDA3937_RS01845 - PTS sucrose transporter subunit IIBC, at 409,315 to 410,685 _RS01845 DDA3937_RS01850: DDA3937_RS01850 - carbohydrate porin, at 410,767 to 412,383 _RS01850 DDA3937_RS01855: DDA3937_RS01855 - aminoimidazole riboside kinase, at 412,577 to 413,500 _RS01855 Position (kb) 410 411 412 413Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 409.788 kb on - strand, within DDA3937_RS01845at 409.972 kb on - strand, within DDA3937_RS01845at 410.157 kb on - strand, within DDA3937_RS01845at 410.235 kb on + strand, within DDA3937_RS01845at 410.235 kb on + strand, within DDA3937_RS01845at 410.235 kb on + strand, within DDA3937_RS01845at 410.235 kb on + strand, within DDA3937_RS01845at 410.235 kb on + strand, within DDA3937_RS01845at 410.235 kb on + strand, within DDA3937_RS01845at 410.236 kb on - strand, within DDA3937_RS01845at 410.279 kb on + strand, within DDA3937_RS01845at 410.279 kb on + strand, within DDA3937_RS01845at 410.466 kb on - strand, within DDA3937_RS01845at 410.647 kb on + strandat 410.648 kb on - strandat 410.648 kb on - strandat 410.680 kb on - strandat 410.685 kb on + strandat 410.685 kb on + strandat 410.686 kb on - strandat 410.699 kb on + strandat 410.700 kb on - strandat 410.736 kb on + strandat 410.737 kb on - strandat 410.737 kb on - strandat 410.737 kb on - strandat 410.737 kb on - strandat 410.852 kb on + strandat 410.852 kb on + strandat 410.852 kb on + strandat 410.852 kb on + strandat 410.852 kb on + strandat 410.852 kb on + strandat 410.852 kb on + strandat 410.852 kb on + strandat 410.853 kb on - strandat 410.853 kb on - strandat 410.882 kb on + strandat 410.882 kb on + strandat 410.882 kb on + strandat 410.883 kb on - strandat 410.883 kb on - strandat 410.883 kb on - strandat 410.883 kb on - strandat 410.883 kb on - strandat 410.917 kb on + strandat 410.917 kb on + strandat 410.929 kb on - strand, within DDA3937_RS01850at 410.966 kb on + strand, within DDA3937_RS01850at 410.966 kb on + strand, within DDA3937_RS01850at 410.967 kb on - strand, within DDA3937_RS01850at 410.967 kb on - strand, within DDA3937_RS01850at 410.967 kb on - strand, within DDA3937_RS01850at 410.967 kb on - strand, within DDA3937_RS01850at 410.981 kb on - strand, within DDA3937_RS01850at 410.981 kb on - strand, within DDA3937_RS01850at 410.989 kb on - strand, within DDA3937_RS01850at 410.989 kb on - strand, within DDA3937_RS01850at 410.995 kb on + strand, within DDA3937_RS01850at 410.995 kb on + strand, within DDA3937_RS01850at 410.996 kb on - strand, within DDA3937_RS01850at 410.999 kb on + strand, within DDA3937_RS01850at 410.999 kb on + strand, within DDA3937_RS01850at 411.000 kb on - strand, within DDA3937_RS01850at 411.000 kb on - strand, within DDA3937_RS01850at 411.000 kb on - strand, within DDA3937_RS01850at 411.000 kb on - strand, within DDA3937_RS01850at 411.000 kb on - strand, within DDA3937_RS01850at 411.000 kb on - strand, within DDA3937_RS01850at 411.000 kb on - strand, within DDA3937_RS01850at 411.021 kb on + strand, within DDA3937_RS01850at 411.021 kb on + strand, within DDA3937_RS01850at 411.021 kb on + strand, within DDA3937_RS01850at 411.021 kb on + strand, within DDA3937_RS01850at 411.022 kb on - strand, within DDA3937_RS01850at 411.022 kb on - strand, within DDA3937_RS01850at 411.022 kb on - strand, within DDA3937_RS01850at 411.022 kb on - strand, within DDA3937_RS01850at 411.022 kb on - strandat 411.022 kb on - strand, within DDA3937_RS01850at 411.022 kb on - strand, within DDA3937_RS01850at 411.022 kb on - strand, within DDA3937_RS01850at 411.022 kb on - strand, within DDA3937_RS01850at 411.022 kb on - strand, within DDA3937_RS01850at 411.022 kb on - strand, within DDA3937_RS01850at 411.022 kb on - strand, within DDA3937_RS01850at 411.022 kb on - strand, within DDA3937_RS01850at 411.022 kb on - strand, within DDA3937_RS01850at 411.022 kb on - strand, within DDA3937_RS01850at 411.023 kb on + strand, within DDA3937_RS01850at 411.023 kb on + strand, within DDA3937_RS01850at 411.023 kb on + strand, within DDA3937_RS01850at 411.023 kb on + strand, within DDA3937_RS01850at 411.023 kb on + strand, within DDA3937_RS01850at 411.024 kb on - strand, within DDA3937_RS01850at 411.024 kb on - strand, within DDA3937_RS01850at 411.024 kb on - strand, within DDA3937_RS01850at 411.024 kb on - strand, within DDA3937_RS01850at 411.024 kb on - strand, within DDA3937_RS01850at 411.024 kb on - strand, within DDA3937_RS01850at 411.024 kb on - strand, within DDA3937_RS01850at 411.030 kb on - strand, within DDA3937_RS01850at 411.030 kb on - strand, within DDA3937_RS01850at 411.064 kb on - strand, within DDA3937_RS01850at 411.087 kb on + strand, within DDA3937_RS01850at 411.087 kb on + strand, within DDA3937_RS01850at 411.087 kb on + strand, within DDA3937_RS01850at 411.087 kb on + strand, within DDA3937_RS01850at 411.087 kb on + strand, within DDA3937_RS01850at 411.087 kb on + strand, within DDA3937_RS01850at 411.087 kb on + strand, within DDA3937_RS01850at 411.087 kb on + strand, within DDA3937_RS01850at 411.087 kb on + strand, within DDA3937_RS01850at 411.088 kb on - strand, within DDA3937_RS01850at 411.088 kb on - strand, within DDA3937_RS01850at 411.088 kb on - strand, within DDA3937_RS01850at 411.088 kb on - strand, within DDA3937_RS01850at 411.105 kb on - strand, within DDA3937_RS01850at 411.122 kb on + strand, within DDA3937_RS01850at 411.123 kb on - strand, within DDA3937_RS01850at 411.174 kb on + strand, within DDA3937_RS01850at 411.174 kb on + strand, within DDA3937_RS01850at 411.194 kb on + strand, within DDA3937_RS01850at 411.194 kb on + strand, within DDA3937_RS01850at 411.195 kb on - strand, within DDA3937_RS01850at 411.320 kb on + strand, within DDA3937_RS01850at 411.321 kb on - strand, within DDA3937_RS01850at 411.321 kb on - strand, within DDA3937_RS01850at 411.421 kb on + strand, within DDA3937_RS01850at 411.422 kb on - strand, within DDA3937_RS01850at 411.422 kb on - strand, within DDA3937_RS01850at 411.422 kb on - strand, within DDA3937_RS01850at 411.422 kb on - strand, within DDA3937_RS01850at 411.432 kb on + strandat 411.432 kb on + strand, within DDA3937_RS01850at 411.432 kb on + strand, within DDA3937_RS01850at 411.480 kb on + strand, within DDA3937_RS01850at 411.481 kb on - strand, within DDA3937_RS01850at 411.497 kb on + strand, within DDA3937_RS01850at 411.497 kb on + strand, within DDA3937_RS01850at 411.497 kb on + strand, within DDA3937_RS01850at 411.497 kb on + strand, within DDA3937_RS01850at 411.498 kb on - strand, within DDA3937_RS01850at 411.498 kb on - strand, within DDA3937_RS01850at 411.498 kb on - strand, within DDA3937_RS01850at 411.541 kb on - strand, within DDA3937_RS01850at 411.548 kb on + strand, within DDA3937_RS01850at 411.549 kb on - strand, within DDA3937_RS01850at 411.556 kb on + strand, within DDA3937_RS01850at 411.556 kb on + strand, within DDA3937_RS01850at 411.556 kb on + strandat 411.557 kb on - strand, within DDA3937_RS01850at 411.557 kb on - strand, within DDA3937_RS01850at 411.593 kb on + strand, within DDA3937_RS01850at 411.593 kb on + strand, within DDA3937_RS01850at 411.593 kb on + strand, within DDA3937_RS01850at 411.594 kb on - strand, within DDA3937_RS01850at 411.594 kb on - strand, within DDA3937_RS01850at 411.594 kb on - strand, within DDA3937_RS01850at 411.657 kb on + strand, within DDA3937_RS01850at 411.658 kb on - strand, within DDA3937_RS01850at 411.711 kb on + strand, within DDA3937_RS01850at 411.788 kb on + strand, within DDA3937_RS01850at 411.788 kb on + strand, within DDA3937_RS01850at 411.788 kb on + strand, within DDA3937_RS01850at 411.788 kb on + strand, within DDA3937_RS01850at 411.789 kb on - strand, within DDA3937_RS01850at 411.789 kb on - strand, within DDA3937_RS01850at 411.789 kb on - strand, within DDA3937_RS01850at 411.789 kb on - strand, within DDA3937_RS01850at 411.789 kb on - strand, within DDA3937_RS01850at 411.789 kb on - strand, within DDA3937_RS01850at 411.789 kb on - strand, within DDA3937_RS01850at 411.878 kb on + strand, within DDA3937_RS01850at 411.878 kb on + strand, within DDA3937_RS01850at 411.879 kb on - strand, within DDA3937_RS01850at 411.879 kb on - strand, within DDA3937_RS01850at 411.879 kb on - strand, within DDA3937_RS01850at 412.035 kb on + strand, within DDA3937_RS01850at 412.035 kb on + strand, within DDA3937_RS01850at 412.035 kb on + strand, within DDA3937_RS01850at 412.035 kb on + strand, within DDA3937_RS01850at 412.035 kb on + strand, within DDA3937_RS01850at 412.069 kb on + strand, within DDA3937_RS01850at 412.305 kb on + strandat 412.336 kb on - strandat 412.336 kb on - strandat 412.367 kb on + strandat 412.367 kb on + strandat 412.378 kb on + strandat 412.459 kb on + strandat 412.460 kb on - strandat 412.579 kb on - strandat 412.679 kb on - strand, within DDA3937_RS01855at 412.698 kb on + strand, within DDA3937_RS01855at 413.072 kb on + strand, within DDA3937_RS01855at 413.073 kb on - strand, within DDA3937_RS01855at 413.257 kb on + strand, within DDA3937_RS01855at 413.257 kb on + strand, within DDA3937_RS01855at 413.258 kb on - strand, within DDA3937_RS01855

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Per-strain Table

Position Strand Gene LocusTag Fraction Atlantic
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409,788 - DDA3937_RS01845 0.35 -0.2
409,972 - DDA3937_RS01845 0.48 -0.1
410,157 - DDA3937_RS01845 0.61 +0.0
410,235 + DDA3937_RS01845 0.67 -1.6
410,235 + DDA3937_RS01845 0.67 -1.9
410,235 + DDA3937_RS01845 0.67 -1.5
410,235 + DDA3937_RS01845 0.67 -1.1
410,235 + DDA3937_RS01845 0.67 +0.7
410,235 + DDA3937_RS01845 0.67 -1.2
410,236 - DDA3937_RS01845 0.67 -1.5
410,279 + DDA3937_RS01845 0.70 -0.9
410,279 + DDA3937_RS01845 0.70 -0.2
410,466 - DDA3937_RS01845 0.84 -0.5
410,647 + -0.2
410,648 - -2.2
410,648 - -0.7
410,680 - +0.3
410,685 + -1.6
410,685 + +0.1
410,686 - +0.6
410,699 + -1.1
410,700 - -1.5
410,736 + -0.7
410,737 - +0.2
410,737 - +0.6
410,737 - -1.0
410,737 - -0.9
410,852 + +0.2
410,852 + -0.2
410,852 + -1.7
410,852 + -1.6
410,852 + -0.5
410,852 + +0.3
410,852 + -3.0
410,852 + -0.4
410,853 - +0.3
410,853 - +4.0
410,882 + -0.1
410,882 + +1.1
410,882 + -2.7
410,883 - -0.3
410,883 - +0.9
410,883 - -0.8
410,883 - -0.7
410,883 - +1.1
410,917 + -0.3
410,917 + +0.3
410,929 - DDA3937_RS01850 0.10 -1.7
410,966 + DDA3937_RS01850 0.12 -0.9
410,966 + DDA3937_RS01850 0.12 -0.5
410,967 - DDA3937_RS01850 0.12 +0.0
410,967 - DDA3937_RS01850 0.12 -0.7
410,967 - DDA3937_RS01850 0.12 +0.5
410,967 - DDA3937_RS01850 0.12 -1.5
410,981 - DDA3937_RS01850 0.13 +0.4
410,981 - DDA3937_RS01850 0.13 -1.3
410,989 - DDA3937_RS01850 0.14 +2.1
410,989 - DDA3937_RS01850 0.14 +0.2
410,995 + DDA3937_RS01850 0.14 -3.1
410,995 + DDA3937_RS01850 0.14 -0.6
410,996 - DDA3937_RS01850 0.14 -1.5
410,999 + DDA3937_RS01850 0.14 -1.0
410,999 + DDA3937_RS01850 0.14 +1.5
411,000 - DDA3937_RS01850 0.14 -1.2
411,000 - DDA3937_RS01850 0.14 -0.2
411,000 - DDA3937_RS01850 0.14 -1.3
411,000 - DDA3937_RS01850 0.14 +1.4
411,000 - DDA3937_RS01850 0.14 -0.8
411,000 - DDA3937_RS01850 0.14 -2.9
411,000 - DDA3937_RS01850 0.14 -0.2
411,021 + DDA3937_RS01850 0.16 +0.1
411,021 + DDA3937_RS01850 0.16 -2.4
411,021 + DDA3937_RS01850 0.16 -1.2
411,021 + DDA3937_RS01850 0.16 +1.3
411,022 - DDA3937_RS01850 0.16 -1.1
411,022 - DDA3937_RS01850 0.16 +0.1
411,022 - DDA3937_RS01850 0.16 -0.5
411,022 - DDA3937_RS01850 0.16 +1.2
411,022 - -0.2
411,022 - DDA3937_RS01850 0.16 -0.7
411,022 - DDA3937_RS01850 0.16 +0.7
411,022 - DDA3937_RS01850 0.16 +0.6
411,022 - DDA3937_RS01850 0.16 -2.1
411,022 - DDA3937_RS01850 0.16 -0.0
411,022 - DDA3937_RS01850 0.16 -0.5
411,022 - DDA3937_RS01850 0.16 -1.7
411,022 - DDA3937_RS01850 0.16 +0.8
411,022 - DDA3937_RS01850 0.16 +0.5
411,022 - DDA3937_RS01850 0.16 -1.0
411,023 + DDA3937_RS01850 0.16 -0.5
411,023 + DDA3937_RS01850 0.16 -2.5
411,023 + DDA3937_RS01850 0.16 -1.6
411,023 + DDA3937_RS01850 0.16 -0.2
411,023 + DDA3937_RS01850 0.16 +0.1
411,024 - DDA3937_RS01850 0.16 -0.8
411,024 - DDA3937_RS01850 0.16 +2.4
411,024 - DDA3937_RS01850 0.16 +1.4
411,024 - DDA3937_RS01850 0.16 -0.5
411,024 - DDA3937_RS01850 0.16 +0.8
411,024 - DDA3937_RS01850 0.16 -1.0
411,024 - DDA3937_RS01850 0.16 +0.7
411,030 - DDA3937_RS01850 0.16 +0.1
411,030 - DDA3937_RS01850 0.16 +0.2
411,064 - DDA3937_RS01850 0.18 +0.8
411,087 + DDA3937_RS01850 0.20 -1.9
411,087 + DDA3937_RS01850 0.20 -0.2
411,087 + DDA3937_RS01850 0.20 +0.6
411,087 + DDA3937_RS01850 0.20 -0.3
411,087 + DDA3937_RS01850 0.20 -1.4
411,087 + DDA3937_RS01850 0.20 -1.2
411,087 + DDA3937_RS01850 0.20 -1.5
411,087 + DDA3937_RS01850 0.20 -0.0
411,087 + DDA3937_RS01850 0.20 +0.3
411,088 - DDA3937_RS01850 0.20 +0.0
411,088 - DDA3937_RS01850 0.20 +0.3
411,088 - DDA3937_RS01850 0.20 -1.5
411,088 - DDA3937_RS01850 0.20 -1.7
411,105 - DDA3937_RS01850 0.21 +0.4
411,122 + DDA3937_RS01850 0.22 +0.1
411,123 - DDA3937_RS01850 0.22 -0.0
411,174 + DDA3937_RS01850 0.25 +0.7
411,174 + DDA3937_RS01850 0.25 -0.9
411,194 + DDA3937_RS01850 0.26 -1.2
411,194 + DDA3937_RS01850 0.26 +0.8
411,195 - DDA3937_RS01850 0.26 +1.6
411,320 + DDA3937_RS01850 0.34 -3.0
411,321 - DDA3937_RS01850 0.34 -1.5
411,321 - DDA3937_RS01850 0.34 +0.0
411,421 + DDA3937_RS01850 0.40 -1.2
411,422 - DDA3937_RS01850 0.41 -0.4
411,422 - DDA3937_RS01850 0.41 -0.5
411,422 - DDA3937_RS01850 0.41 -0.4
411,422 - DDA3937_RS01850 0.41 -0.9
411,432 + +3.4
411,432 + DDA3937_RS01850 0.41 -0.7
411,432 + DDA3937_RS01850 0.41 -0.7
411,480 + DDA3937_RS01850 0.44 -1.9
411,481 - DDA3937_RS01850 0.44 -1.0
411,497 + DDA3937_RS01850 0.45 -2.5
411,497 + DDA3937_RS01850 0.45 +0.1
411,497 + DDA3937_RS01850 0.45 -1.0
411,497 + DDA3937_RS01850 0.45 -1.1
411,498 - DDA3937_RS01850 0.45 -2.1
411,498 - DDA3937_RS01850 0.45 -0.4
411,498 - DDA3937_RS01850 0.45 -0.2
411,541 - DDA3937_RS01850 0.48 -0.0
411,548 + DDA3937_RS01850 0.48 +0.2
411,549 - DDA3937_RS01850 0.48 -0.3
411,556 + DDA3937_RS01850 0.49 -1.9
411,556 + DDA3937_RS01850 0.49 +0.0
411,556 + -0.5
411,557 - DDA3937_RS01850 0.49 +2.8
411,557 - DDA3937_RS01850 0.49 -0.0
411,593 + DDA3937_RS01850 0.51 +0.5
411,593 + DDA3937_RS01850 0.51 +0.3
411,593 + DDA3937_RS01850 0.51 -2.1
411,594 - DDA3937_RS01850 0.51 +0.1
411,594 - DDA3937_RS01850 0.51 -0.3
411,594 - DDA3937_RS01850 0.51 +1.3
411,657 + DDA3937_RS01850 0.55 -3.3
411,658 - DDA3937_RS01850 0.55 -1.1
411,711 + DDA3937_RS01850 0.58 -0.3
411,788 + DDA3937_RS01850 0.63 -1.9
411,788 + DDA3937_RS01850 0.63 +0.0
411,788 + DDA3937_RS01850 0.63 -0.8
411,788 + DDA3937_RS01850 0.63 +0.3
411,789 - DDA3937_RS01850 0.63 -1.3
411,789 - DDA3937_RS01850 0.63 -1.2
411,789 - DDA3937_RS01850 0.63 +2.3
411,789 - DDA3937_RS01850 0.63 -1.6
411,789 - DDA3937_RS01850 0.63 -1.5
411,789 - DDA3937_RS01850 0.63 -0.2
411,789 - DDA3937_RS01850 0.63 -1.6
411,878 + DDA3937_RS01850 0.69 +0.8
411,878 + DDA3937_RS01850 0.69 -0.9
411,879 - DDA3937_RS01850 0.69 +0.2
411,879 - DDA3937_RS01850 0.69 +1.2
411,879 - DDA3937_RS01850 0.69 -1.6
412,035 + DDA3937_RS01850 0.78 -2.5
412,035 + DDA3937_RS01850 0.78 +1.1
412,035 + DDA3937_RS01850 0.78 -2.6
412,035 + DDA3937_RS01850 0.78 -0.2
412,035 + DDA3937_RS01850 0.78 +0.0
412,069 + DDA3937_RS01850 0.81 -0.6
412,305 + -1.0
412,336 - -2.2
412,336 - -0.6
412,367 + -0.8
412,367 + -0.2
412,378 + -1.0
412,459 + -3.4
412,460 - +1.2
412,579 - +0.8
412,679 - DDA3937_RS01855 0.11 -0.0
412,698 + DDA3937_RS01855 0.13 +0.8
413,072 + DDA3937_RS01855 0.54 -0.7
413,073 - DDA3937_RS01855 0.54 +0.6
413,257 + DDA3937_RS01855 0.74 -0.1
413,257 + DDA3937_RS01855 0.74 -0.2
413,258 - DDA3937_RS01855 0.74 -1.2

Or see this region's nucleotide sequence