Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS01145

Experiment: Atlantic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS01135 and DDA3937_RS01140 are separated by 165 nucleotidesDDA3937_RS01140 and DDA3937_RS01145 overlap by 4 nucleotidesDDA3937_RS01145 and DDA3937_RS01150 are separated by 13 nucleotides DDA3937_RS01135: DDA3937_RS01135 - hypothetical protein, at 261,086 to 261,709 _RS01135 DDA3937_RS01140: DDA3937_RS01140 - heavy metal response regulator transcription factor, at 261,875 to 262,546 _RS01140 DDA3937_RS01145: DDA3937_RS01145 - heavy metal sensor histidine kinase, at 262,543 to 264,006 _RS01145 DDA3937_RS01150: DDA3937_RS01150 - 2-iminoacetate synthase ThiH, at 264,020 to 265,183 _RS01150 Position (kb) 262 263 264 265Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 261.573 kb on - strand, within DDA3937_RS01135at 261.573 kb on - strand, within DDA3937_RS01135at 261.587 kb on + strand, within DDA3937_RS01135at 261.588 kb on - strand, within DDA3937_RS01135at 261.588 kb on - strand, within DDA3937_RS01135at 261.663 kb on - strandat 261.691 kb on + strandat 261.704 kb on + strandat 261.704 kb on + strandat 261.704 kb on + strandat 261.704 kb on + strandat 261.704 kb on + strandat 261.705 kb on - strandat 261.705 kb on - strandat 261.705 kb on - strandat 261.705 kb on - strandat 261.705 kb on - strandat 261.705 kb on - strandat 261.755 kb on + strandat 261.755 kb on + strandat 261.756 kb on - strandat 261.756 kb on - strandat 261.756 kb on - strandat 261.788 kb on + strandat 261.788 kb on + strandat 261.788 kb on + strandat 261.788 kb on + strandat 261.789 kb on - strandat 261.789 kb on - strandat 261.789 kb on - strandat 261.812 kb on + strandat 261.812 kb on + strandat 261.812 kb on + strandat 261.812 kb on + strandat 261.812 kb on + strandat 261.812 kb on + strandat 261.812 kb on + strandat 261.813 kb on - strandat 261.813 kb on - strandat 261.813 kb on - strandat 261.813 kb on - strandat 261.813 kb on - strandat 261.813 kb on - strandat 261.813 kb on - strandat 261.813 kb on - strandat 261.813 kb on - strandat 261.813 kb on - strandat 261.813 kb on - strandat 261.819 kb on + strandat 261.819 kb on + strandat 261.819 kb on + strandat 261.819 kb on + strandat 261.819 kb on + strandat 261.820 kb on - strandat 261.880 kb on + strandat 261.880 kb on + strandat 261.881 kb on - strandat 261.881 kb on - strandat 261.917 kb on + strandat 261.918 kb on - strandat 262.016 kb on - strand, within DDA3937_RS01140at 262.016 kb on - strand, within DDA3937_RS01140at 262.060 kb on + strand, within DDA3937_RS01140at 262.061 kb on - strand, within DDA3937_RS01140at 262.163 kb on + strand, within DDA3937_RS01140at 262.251 kb on - strand, within DDA3937_RS01140at 262.251 kb on - strand, within DDA3937_RS01140at 262.516 kb on + strandat 262.523 kb on + strandat 262.523 kb on + strandat 262.524 kb on - strandat 262.586 kb on + strandat 262.586 kb on + strandat 262.587 kb on - strandat 262.587 kb on - strandat 262.646 kb on - strandat 262.675 kb on + strandat 262.691 kb on + strand, within DDA3937_RS01145at 262.691 kb on + strand, within DDA3937_RS01145at 262.691 kb on + strand, within DDA3937_RS01145at 262.691 kb on + strand, within DDA3937_RS01145at 262.691 kb on + strand, within DDA3937_RS01145at 262.691 kb on + strandat 262.691 kb on + strand, within DDA3937_RS01145at 262.691 kb on + strand, within DDA3937_RS01145at 262.691 kb on + strand, within DDA3937_RS01145at 262.692 kb on - strand, within DDA3937_RS01145at 262.692 kb on - strand, within DDA3937_RS01145at 262.692 kb on - strand, within DDA3937_RS01145at 262.692 kb on - strand, within DDA3937_RS01145at 262.692 kb on - strand, within DDA3937_RS01145at 262.692 kb on - strand, within DDA3937_RS01145at 262.714 kb on + strand, within DDA3937_RS01145at 262.714 kb on + strand, within DDA3937_RS01145at 262.715 kb on - strand, within DDA3937_RS01145at 262.715 kb on - strand, within DDA3937_RS01145at 262.717 kb on + strand, within DDA3937_RS01145at 262.718 kb on - strand, within DDA3937_RS01145at 262.785 kb on + strand, within DDA3937_RS01145at 262.785 kb on + strand, within DDA3937_RS01145at 262.786 kb on - strand, within DDA3937_RS01145at 262.786 kb on - strand, within DDA3937_RS01145at 262.864 kb on - strand, within DDA3937_RS01145at 262.864 kb on - strand, within DDA3937_RS01145at 262.899 kb on + strand, within DDA3937_RS01145at 262.899 kb on + strand, within DDA3937_RS01145at 262.922 kb on + strand, within DDA3937_RS01145at 262.949 kb on + strand, within DDA3937_RS01145at 263.053 kb on + strand, within DDA3937_RS01145at 263.054 kb on - strand, within DDA3937_RS01145at 263.054 kb on - strand, within DDA3937_RS01145at 263.113 kb on + strand, within DDA3937_RS01145at 263.136 kb on - strand, within DDA3937_RS01145at 263.185 kb on - strand, within DDA3937_RS01145at 263.371 kb on + strand, within DDA3937_RS01145at 263.371 kb on + strand, within DDA3937_RS01145at 263.395 kb on + strandat 263.548 kb on + strand, within DDA3937_RS01145at 263.671 kb on + strand, within DDA3937_RS01145at 263.996 kb on + strandat 264.045 kb on + strandat 264.402 kb on + strand, within DDA3937_RS01150at 264.403 kb on - strand, within DDA3937_RS01150at 264.417 kb on + strand, within DDA3937_RS01150at 264.418 kb on - strand, within DDA3937_RS01150at 264.418 kb on - strand, within DDA3937_RS01150at 264.418 kb on - strand, within DDA3937_RS01150at 264.439 kb on + strand, within DDA3937_RS01150at 264.439 kb on + strand, within DDA3937_RS01150at 264.439 kb on + strand, within DDA3937_RS01150at 264.439 kb on + strand, within DDA3937_RS01150at 264.439 kb on + strand, within DDA3937_RS01150at 264.439 kb on + strand, within DDA3937_RS01150at 264.440 kb on - strand, within DDA3937_RS01150at 264.440 kb on - strand, within DDA3937_RS01150at 264.440 kb on - strand, within DDA3937_RS01150at 264.440 kb on - strand, within DDA3937_RS01150at 264.440 kb on - strand, within DDA3937_RS01150at 264.440 kb on - strand, within DDA3937_RS01150at 264.440 kb on - strand, within DDA3937_RS01150at 264.440 kb on - strand, within DDA3937_RS01150at 264.440 kb on - strand, within DDA3937_RS01150at 264.440 kb on - strand, within DDA3937_RS01150at 264.440 kb on - strand, within DDA3937_RS01150at 264.440 kb on - strand, within DDA3937_RS01150at 264.440 kb on - strand, within DDA3937_RS01150at 264.440 kb on - strand, within DDA3937_RS01150at 264.441 kb on + strand, within DDA3937_RS01150at 264.441 kb on + strand, within DDA3937_RS01150at 264.441 kb on + strand, within DDA3937_RS01150at 264.441 kb on + strand, within DDA3937_RS01150at 264.441 kb on + strand, within DDA3937_RS01150at 264.441 kb on + strand, within DDA3937_RS01150at 264.441 kb on + strand, within DDA3937_RS01150at 264.441 kb on + strand, within DDA3937_RS01150at 264.441 kb on + strand, within DDA3937_RS01150at 264.441 kb on + strand, within DDA3937_RS01150at 264.441 kb on + strand, within DDA3937_RS01150at 264.441 kb on + strand, within DDA3937_RS01150at 264.441 kb on + strand, within DDA3937_RS01150at 264.442 kb on - strand, within DDA3937_RS01150at 264.442 kb on - strand, within DDA3937_RS01150at 264.442 kb on - strand, within DDA3937_RS01150at 264.442 kb on - strand, within DDA3937_RS01150at 264.442 kb on - strand, within DDA3937_RS01150at 264.442 kb on - strand, within DDA3937_RS01150at 264.442 kb on - strand, within DDA3937_RS01150at 264.442 kb on - strand, within DDA3937_RS01150at 264.442 kb on - strand, within DDA3937_RS01150at 264.442 kb on - strand, within DDA3937_RS01150at 264.442 kb on - strand, within DDA3937_RS01150at 264.442 kb on - strand, within DDA3937_RS01150at 264.442 kb on - strand, within DDA3937_RS01150at 264.442 kb on - strand, within DDA3937_RS01150at 264.442 kb on - strand, within DDA3937_RS01150at 264.442 kb on - strand, within DDA3937_RS01150at 264.582 kb on + strand, within DDA3937_RS01150at 264.582 kb on + strandat 264.582 kb on + strand, within DDA3937_RS01150at 264.597 kb on + strand, within DDA3937_RS01150at 264.597 kb on + strand, within DDA3937_RS01150at 264.597 kb on + strand, within DDA3937_RS01150at 264.598 kb on - strand, within DDA3937_RS01150at 264.598 kb on - strand, within DDA3937_RS01150at 264.598 kb on - strand, within DDA3937_RS01150at 264.598 kb on - strand, within DDA3937_RS01150at 264.609 kb on + strand, within DDA3937_RS01150at 264.609 kb on + strand, within DDA3937_RS01150at 264.610 kb on - strand, within DDA3937_RS01150at 264.732 kb on + strand, within DDA3937_RS01150at 264.733 kb on - strand, within DDA3937_RS01150at 264.733 kb on - strand, within DDA3937_RS01150at 264.748 kb on + strand, within DDA3937_RS01150at 264.749 kb on - strand, within DDA3937_RS01150at 264.880 kb on - strand, within DDA3937_RS01150at 264.880 kb on - strand, within DDA3937_RS01150at 264.880 kb on - strand, within DDA3937_RS01150at 264.912 kb on + strand, within DDA3937_RS01150at 264.912 kb on + strand, within DDA3937_RS01150at 264.912 kb on + strand, within DDA3937_RS01150at 264.912 kb on + strand, within DDA3937_RS01150at 264.912 kb on + strand, within DDA3937_RS01150at 264.912 kb on + strand, within DDA3937_RS01150at 264.912 kb on + strand, within DDA3937_RS01150at 264.913 kb on - strand, within DDA3937_RS01150at 264.913 kb on - strand, within DDA3937_RS01150at 264.913 kb on - strand, within DDA3937_RS01150at 264.913 kb on - strand, within DDA3937_RS01150at 264.913 kb on - strand, within DDA3937_RS01150at 264.924 kb on + strand, within DDA3937_RS01150at 264.924 kb on + strand, within DDA3937_RS01150at 264.924 kb on + strand, within DDA3937_RS01150at 264.925 kb on - strand, within DDA3937_RS01150at 264.925 kb on - strand, within DDA3937_RS01150at 264.925 kb on - strand, within DDA3937_RS01150at 264.925 kb on - strand, within DDA3937_RS01150at 264.925 kb on - strand, within DDA3937_RS01150

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Per-strain Table

Position Strand Gene LocusTag Fraction Atlantic
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261,573 - DDA3937_RS01135 0.78 +0.3
261,573 - DDA3937_RS01135 0.78 +1.6
261,587 + DDA3937_RS01135 0.80 -0.5
261,588 - DDA3937_RS01135 0.80 -0.8
261,588 - DDA3937_RS01135 0.80 -1.3
261,663 - -1.4
261,691 + -1.3
261,704 + +1.0
261,704 + +0.1
261,704 + +0.8
261,704 + -1.7
261,704 + +0.4
261,705 - -0.1
261,705 - -1.1
261,705 - -0.4
261,705 - -0.2
261,705 - -1.6
261,705 - -0.9
261,755 + +1.9
261,755 + +1.3
261,756 - -0.8
261,756 - -0.8
261,756 - +0.5
261,788 + -0.8
261,788 + -0.2
261,788 + -0.3
261,788 + +0.1
261,789 - -1.3
261,789 - +0.8
261,789 - +0.9
261,812 + +0.6
261,812 + +0.2
261,812 + -2.1
261,812 + -0.1
261,812 + -0.1
261,812 + -1.3
261,812 + +1.3
261,813 - +0.4
261,813 - -2.0
261,813 - -1.1
261,813 - -0.6
261,813 - -0.5
261,813 - -0.7
261,813 - +0.5
261,813 - -1.0
261,813 - -0.1
261,813 - -0.7
261,813 - +2.7
261,819 + +0.3
261,819 + -0.9
261,819 + -0.2
261,819 + -1.2
261,819 + +0.3
261,820 - -0.7
261,880 + +0.2
261,880 + +0.4
261,881 - -0.3
261,881 - -0.1
261,917 + +0.3
261,918 - -0.3
262,016 - DDA3937_RS01140 0.21 -1.2
262,016 - DDA3937_RS01140 0.21 +0.1
262,060 + DDA3937_RS01140 0.28 -1.2
262,061 - DDA3937_RS01140 0.28 -0.9
262,163 + DDA3937_RS01140 0.43 -0.8
262,251 - DDA3937_RS01140 0.56 +0.4
262,251 - DDA3937_RS01140 0.56 -2.2
262,516 + -0.1
262,523 + -1.8
262,523 + +0.6
262,524 - -0.9
262,586 + -0.1
262,586 + -1.3
262,587 - -1.6
262,587 - -0.1
262,646 - +0.7
262,675 + -0.5
262,691 + DDA3937_RS01145 0.10 -1.6
262,691 + DDA3937_RS01145 0.10 +0.3
262,691 + DDA3937_RS01145 0.10 -0.4
262,691 + DDA3937_RS01145 0.10 +1.9
262,691 + DDA3937_RS01145 0.10 -1.1
262,691 + +0.3
262,691 + DDA3937_RS01145 0.10 -0.5
262,691 + DDA3937_RS01145 0.10 +2.4
262,691 + DDA3937_RS01145 0.10 +0.4
262,692 - DDA3937_RS01145 0.10 +2.3
262,692 - DDA3937_RS01145 0.10 -0.0
262,692 - DDA3937_RS01145 0.10 -1.6
262,692 - DDA3937_RS01145 0.10 -2.7
262,692 - DDA3937_RS01145 0.10 +0.2
262,692 - DDA3937_RS01145 0.10 -1.0
262,714 + DDA3937_RS01145 0.12 +1.7
262,714 + DDA3937_RS01145 0.12 -0.9
262,715 - DDA3937_RS01145 0.12 -0.1
262,715 - DDA3937_RS01145 0.12 -1.8
262,717 + DDA3937_RS01145 0.12 -0.9
262,718 - DDA3937_RS01145 0.12 -1.7
262,785 + DDA3937_RS01145 0.17 -0.9
262,785 + DDA3937_RS01145 0.17 +0.5
262,786 - DDA3937_RS01145 0.17 +2.3
262,786 - DDA3937_RS01145 0.17 -1.8
262,864 - DDA3937_RS01145 0.22 +0.1
262,864 - DDA3937_RS01145 0.22 +0.3
262,899 + DDA3937_RS01145 0.24 +0.8
262,899 + DDA3937_RS01145 0.24 +0.3
262,922 + DDA3937_RS01145 0.26 -0.2
262,949 + DDA3937_RS01145 0.28 +0.4
263,053 + DDA3937_RS01145 0.35 -1.4
263,054 - DDA3937_RS01145 0.35 +0.7
263,054 - DDA3937_RS01145 0.35 -1.3
263,113 + DDA3937_RS01145 0.39 +0.6
263,136 - DDA3937_RS01145 0.41 -1.3
263,185 - DDA3937_RS01145 0.44 +0.4
263,371 + DDA3937_RS01145 0.57 -0.6
263,371 + DDA3937_RS01145 0.57 +0.1
263,395 + +1.9
263,548 + DDA3937_RS01145 0.69 -0.2
263,671 + DDA3937_RS01145 0.77 -0.3
263,996 + +1.9
264,045 + +0.3
264,402 + DDA3937_RS01150 0.33 -2.0
264,403 - DDA3937_RS01150 0.33 +1.5
264,417 + DDA3937_RS01150 0.34 +3.2
264,418 - DDA3937_RS01150 0.34 -1.1
264,418 - DDA3937_RS01150 0.34 -1.9
264,418 - DDA3937_RS01150 0.34 -1.1
264,439 + DDA3937_RS01150 0.36 -0.7
264,439 + DDA3937_RS01150 0.36 +1.1
264,439 + DDA3937_RS01150 0.36 +0.6
264,439 + DDA3937_RS01150 0.36 +0.3
264,439 + DDA3937_RS01150 0.36 +0.8
264,439 + DDA3937_RS01150 0.36 +0.5
264,440 - DDA3937_RS01150 0.36 -0.7
264,440 - DDA3937_RS01150 0.36 +2.4
264,440 - DDA3937_RS01150 0.36 -0.3
264,440 - DDA3937_RS01150 0.36 +0.5
264,440 - DDA3937_RS01150 0.36 -1.6
264,440 - DDA3937_RS01150 0.36 -0.1
264,440 - DDA3937_RS01150 0.36 -1.0
264,440 - DDA3937_RS01150 0.36 -0.5
264,440 - DDA3937_RS01150 0.36 -1.3
264,440 - DDA3937_RS01150 0.36 -0.4
264,440 - DDA3937_RS01150 0.36 +0.8
264,440 - DDA3937_RS01150 0.36 +0.5
264,440 - DDA3937_RS01150 0.36 -2.1
264,440 - DDA3937_RS01150 0.36 -1.6
264,441 + DDA3937_RS01150 0.36 -1.6
264,441 + DDA3937_RS01150 0.36 -1.2
264,441 + DDA3937_RS01150 0.36 -0.0
264,441 + DDA3937_RS01150 0.36 +0.1
264,441 + DDA3937_RS01150 0.36 +1.4
264,441 + DDA3937_RS01150 0.36 +0.9
264,441 + DDA3937_RS01150 0.36 -1.6
264,441 + DDA3937_RS01150 0.36 -0.4
264,441 + DDA3937_RS01150 0.36 -0.7
264,441 + DDA3937_RS01150 0.36 -0.1
264,441 + DDA3937_RS01150 0.36 -0.5
264,441 + DDA3937_RS01150 0.36 -1.3
264,441 + DDA3937_RS01150 0.36 -2.2
264,442 - DDA3937_RS01150 0.36 +0.5
264,442 - DDA3937_RS01150 0.36 -0.0
264,442 - DDA3937_RS01150 0.36 +1.6
264,442 - DDA3937_RS01150 0.36 -0.3
264,442 - DDA3937_RS01150 0.36 -0.9
264,442 - DDA3937_RS01150 0.36 +0.3
264,442 - DDA3937_RS01150 0.36 -3.6
264,442 - DDA3937_RS01150 0.36 +0.4
264,442 - DDA3937_RS01150 0.36 +0.3
264,442 - DDA3937_RS01150 0.36 +0.1
264,442 - DDA3937_RS01150 0.36 -1.1
264,442 - DDA3937_RS01150 0.36 -0.3
264,442 - DDA3937_RS01150 0.36 -0.8
264,442 - DDA3937_RS01150 0.36 -0.2
264,442 - DDA3937_RS01150 0.36 +0.6
264,442 - DDA3937_RS01150 0.36 -0.5
264,582 + DDA3937_RS01150 0.48 +0.4
264,582 + -0.1
264,582 + DDA3937_RS01150 0.48 +2.1
264,597 + DDA3937_RS01150 0.50 +0.7
264,597 + DDA3937_RS01150 0.50 -0.1
264,597 + DDA3937_RS01150 0.50 -1.5
264,598 - DDA3937_RS01150 0.50 +1.2
264,598 - DDA3937_RS01150 0.50 -1.8
264,598 - DDA3937_RS01150 0.50 +0.4
264,598 - DDA3937_RS01150 0.50 +0.9
264,609 + DDA3937_RS01150 0.51 -0.9
264,609 + DDA3937_RS01150 0.51 -0.0
264,610 - DDA3937_RS01150 0.51 -0.1
264,732 + DDA3937_RS01150 0.61 -0.9
264,733 - DDA3937_RS01150 0.61 -1.2
264,733 - DDA3937_RS01150 0.61 -0.6
264,748 + DDA3937_RS01150 0.63 +2.1
264,749 - DDA3937_RS01150 0.63 +2.4
264,880 - DDA3937_RS01150 0.74 -1.6
264,880 - DDA3937_RS01150 0.74 -1.3
264,880 - DDA3937_RS01150 0.74 -1.5
264,912 + DDA3937_RS01150 0.77 -1.2
264,912 + DDA3937_RS01150 0.77 -0.6
264,912 + DDA3937_RS01150 0.77 -1.3
264,912 + DDA3937_RS01150 0.77 +0.0
264,912 + DDA3937_RS01150 0.77 -0.5
264,912 + DDA3937_RS01150 0.77 -1.0
264,912 + DDA3937_RS01150 0.77 +0.7
264,913 - DDA3937_RS01150 0.77 +1.0
264,913 - DDA3937_RS01150 0.77 +0.1
264,913 - DDA3937_RS01150 0.77 -0.6
264,913 - DDA3937_RS01150 0.77 +1.7
264,913 - DDA3937_RS01150 0.77 -1.3
264,924 + DDA3937_RS01150 0.78 -2.5
264,924 + DDA3937_RS01150 0.78 -1.9
264,924 + DDA3937_RS01150 0.78 +2.9
264,925 - DDA3937_RS01150 0.78 +0.9
264,925 - DDA3937_RS01150 0.78 +1.1
264,925 - DDA3937_RS01150 0.78 -0.5
264,925 - DDA3937_RS01150 0.78 +1.1
264,925 - DDA3937_RS01150 0.78 -0.2

Or see this region's nucleotide sequence