Experiment: Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS00960 and DDA3937_RS00965 are separated by 179 nucleotides DDA3937_RS00965 and DDA3937_RS00970 are separated by 176 nucleotides
DDA3937_RS00960: DDA3937_RS00960 - methylenetetrahydrofolate reductase, at 221,642 to 222,538
_RS00960
DDA3937_RS00965: DDA3937_RS00965 - glutathione peroxidase, at 222,718 to 223,449
_RS00965
DDA3937_RS00970: DDA3937_RS00970 - DNA-binding transcriptional regulator OxyR, at 223,626 to 224,543
_RS00970
Position (kb) 222
223
224 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 221.800 kb on + strand, within DDA3937_RS00960 at 221.800 kb on + strand, within DDA3937_RS00960 at 221.801 kb on - strand, within DDA3937_RS00960 at 221.819 kb on + strand, within DDA3937_RS00960 at 221.820 kb on - strand, within DDA3937_RS00960 at 221.820 kb on - strand, within DDA3937_RS00960 at 221.881 kb on + strand, within DDA3937_RS00960 at 221.881 kb on + strand, within DDA3937_RS00960 at 222.019 kb on + strand, within DDA3937_RS00960 at 222.032 kb on + strand, within DDA3937_RS00960 at 222.032 kb on + strand, within DDA3937_RS00960 at 222.032 kb on + strand, within DDA3937_RS00960 at 222.032 kb on + strand, within DDA3937_RS00960 at 222.032 kb on + strand, within DDA3937_RS00960 at 222.032 kb on + strand, within DDA3937_RS00960 at 222.033 kb on - strand, within DDA3937_RS00960 at 222.033 kb on - strand, within DDA3937_RS00960 at 222.033 kb on - strand, within DDA3937_RS00960 at 222.033 kb on - strand, within DDA3937_RS00960 at 222.033 kb on - strand, within DDA3937_RS00960 at 222.033 kb on - strand, within DDA3937_RS00960 at 222.080 kb on - strand, within DDA3937_RS00960 at 222.080 kb on - strand, within DDA3937_RS00960 at 222.080 kb on - strand, within DDA3937_RS00960 at 222.096 kb on - strand, within DDA3937_RS00960 at 222.142 kb on + strand, within DDA3937_RS00960 at 222.143 kb on - strand, within DDA3937_RS00960 at 222.143 kb on - strand, within DDA3937_RS00960 at 222.418 kb on + strand, within DDA3937_RS00960 at 222.419 kb on - strand, within DDA3937_RS00960 at 222.419 kb on - strand, within DDA3937_RS00960 at 222.464 kb on + strand at 222.464 kb on + strand at 222.464 kb on + strand at 222.465 kb on - strand at 222.465 kb on - strand at 222.465 kb on - strand at 222.491 kb on + strand at 222.492 kb on - strand at 222.492 kb on - strand at 222.505 kb on + strand at 222.505 kb on + strand at 222.506 kb on - strand at 222.506 kb on - strand at 222.506 kb on - strand at 222.581 kb on + strand at 222.603 kb on + strand at 222.603 kb on + strand at 222.604 kb on - strand at 222.604 kb on - strand at 222.614 kb on + strand at 222.778 kb on + strand at 222.778 kb on + strand at 222.779 kb on - strand at 222.779 kb on - strand at 222.795 kb on + strand, within DDA3937_RS00965 at 222.795 kb on + strand, within DDA3937_RS00965 at 222.795 kb on + strand, within DDA3937_RS00965 at 222.795 kb on + strand, within DDA3937_RS00965 at 222.796 kb on - strand, within DDA3937_RS00965 at 222.922 kb on - strand, within DDA3937_RS00965 at 222.948 kb on + strand at 222.948 kb on + strand, within DDA3937_RS00965 at 222.948 kb on + strand, within DDA3937_RS00965 at 222.948 kb on + strand, within DDA3937_RS00965 at 222.948 kb on + strand, within DDA3937_RS00965 at 222.949 kb on - strand, within DDA3937_RS00965 at 222.949 kb on - strand, within DDA3937_RS00965 at 222.949 kb on - strand, within DDA3937_RS00965 at 222.950 kb on + strand, within DDA3937_RS00965 at 222.950 kb on + strand, within DDA3937_RS00965 at 222.950 kb on + strand, within DDA3937_RS00965 at 222.951 kb on - strand, within DDA3937_RS00965 at 222.951 kb on - strand, within DDA3937_RS00965 at 222.951 kb on - strand, within DDA3937_RS00965 at 222.951 kb on - strand, within DDA3937_RS00965 at 222.951 kb on - strand, within DDA3937_RS00965 at 222.951 kb on - strand, within DDA3937_RS00965 at 222.965 kb on + strand, within DDA3937_RS00965 at 222.966 kb on - strand, within DDA3937_RS00965 at 222.966 kb on - strand, within DDA3937_RS00965 at 223.068 kb on - strand, within DDA3937_RS00965 at 223.122 kb on + strand, within DDA3937_RS00965 at 223.123 kb on - strand, within DDA3937_RS00965 at 223.161 kb on + strand, within DDA3937_RS00965 at 223.164 kb on + strand, within DDA3937_RS00965 at 223.164 kb on + strand, within DDA3937_RS00965 at 223.209 kb on + strand, within DDA3937_RS00965 at 223.210 kb on - strand, within DDA3937_RS00965 at 223.210 kb on - strand, within DDA3937_RS00965 at 223.228 kb on + strand, within DDA3937_RS00965 at 223.229 kb on - strand, within DDA3937_RS00965 at 223.275 kb on + strand, within DDA3937_RS00965 at 223.275 kb on + strand, within DDA3937_RS00965 at 223.276 kb on - strand, within DDA3937_RS00965 at 223.276 kb on - strand at 223.277 kb on + strand, within DDA3937_RS00965 at 223.277 kb on + strand, within DDA3937_RS00965 at 223.277 kb on + strand, within DDA3937_RS00965 at 223.277 kb on + strand, within DDA3937_RS00965 at 223.277 kb on + strand, within DDA3937_RS00965 at 223.277 kb on + strand, within DDA3937_RS00965 at 223.277 kb on + strand, within DDA3937_RS00965 at 223.278 kb on - strand, within DDA3937_RS00965 at 223.278 kb on - strand, within DDA3937_RS00965 at 223.311 kb on + strand, within DDA3937_RS00965 at 223.339 kb on + strand, within DDA3937_RS00965 at 223.340 kb on - strand, within DDA3937_RS00965 at 223.411 kb on + strand at 223.527 kb on - strand at 223.527 kb on - strand at 223.527 kb on - strand at 223.571 kb on - strand at 223.631 kb on + strand at 223.631 kb on + strand at 223.642 kb on + strand at 223.642 kb on + strand at 223.643 kb on - strand at 223.643 kb on - strand at 223.643 kb on - strand at 223.992 kb on + strand, within DDA3937_RS00970 at 223.992 kb on + strand at 223.993 kb on - strand, within DDA3937_RS00970 at 224.333 kb on + strand, within DDA3937_RS00970 at 224.337 kb on - strand, within DDA3937_RS00970 at 224.392 kb on - strand, within DDA3937_RS00970 at 224.392 kb on - strand, within DDA3937_RS00970 at 224.404 kb on - strand, within DDA3937_RS00970 at 224.439 kb on + strand, within DDA3937_RS00970 at 224.440 kb on - strand, within DDA3937_RS00970 at 224.440 kb on - strand, within DDA3937_RS00970
Per-strain Table
Position Strand Gene LocusTag Fraction Atlantic remove 221,800 + DDA3937_RS00960 0.18 -0.1 221,800 + DDA3937_RS00960 0.18 -1.3 221,801 - DDA3937_RS00960 0.18 -1.9 221,819 + DDA3937_RS00960 0.20 -0.1 221,820 - DDA3937_RS00960 0.20 -2.6 221,820 - DDA3937_RS00960 0.20 -1.1 221,881 + DDA3937_RS00960 0.27 -1.0 221,881 + DDA3937_RS00960 0.27 -1.0 222,019 + DDA3937_RS00960 0.42 +0.9 222,032 + DDA3937_RS00960 0.43 +0.3 222,032 + DDA3937_RS00960 0.43 +0.4 222,032 + DDA3937_RS00960 0.43 +1.0 222,032 + DDA3937_RS00960 0.43 +0.6 222,032 + DDA3937_RS00960 0.43 -1.1 222,032 + DDA3937_RS00960 0.43 +0.1 222,033 - DDA3937_RS00960 0.44 -0.1 222,033 - DDA3937_RS00960 0.44 -1.3 222,033 - DDA3937_RS00960 0.44 -1.8 222,033 - DDA3937_RS00960 0.44 +2.3 222,033 - DDA3937_RS00960 0.44 -2.9 222,033 - DDA3937_RS00960 0.44 +4.4 222,080 - DDA3937_RS00960 0.49 -1.9 222,080 - DDA3937_RS00960 0.49 +1.2 222,080 - DDA3937_RS00960 0.49 -1.6 222,096 - DDA3937_RS00960 0.51 -0.7 222,142 + DDA3937_RS00960 0.56 -0.7 222,143 - DDA3937_RS00960 0.56 -2.6 222,143 - DDA3937_RS00960 0.56 -1.7 222,418 + DDA3937_RS00960 0.87 +0.8 222,419 - DDA3937_RS00960 0.87 +1.0 222,419 - DDA3937_RS00960 0.87 +0.3 222,464 + +0.9 222,464 + -0.6 222,464 + -1.3 222,465 - +0.5 222,465 - -1.1 222,465 - +0.2 222,491 + +1.1 222,492 - -1.2 222,492 - -2.0 222,505 + -0.6 222,505 + -1.2 222,506 - -1.9 222,506 - +0.3 222,506 - +0.7 222,581 + -0.1 222,603 + +0.3 222,603 + +0.8 222,604 - +0.7 222,604 - -1.6 222,614 + -1.1 222,778 + -1.1 222,778 + -1.3 222,779 - +0.9 222,779 - -0.1 222,795 + DDA3937_RS00965 0.11 -0.2 222,795 + DDA3937_RS00965 0.11 -0.4 222,795 + DDA3937_RS00965 0.11 -2.4 222,795 + DDA3937_RS00965 0.11 +0.3 222,796 - DDA3937_RS00965 0.11 +4.5 222,922 - DDA3937_RS00965 0.28 -0.7 222,948 + -0.7 222,948 + DDA3937_RS00965 0.31 -0.7 222,948 + DDA3937_RS00965 0.31 +0.7 222,948 + DDA3937_RS00965 0.31 +1.0 222,948 + DDA3937_RS00965 0.31 -1.1 222,949 - DDA3937_RS00965 0.32 +0.5 222,949 - DDA3937_RS00965 0.32 -1.1 222,949 - DDA3937_RS00965 0.32 -0.3 222,950 + DDA3937_RS00965 0.32 -0.8 222,950 + DDA3937_RS00965 0.32 +0.4 222,950 + DDA3937_RS00965 0.32 -1.8 222,951 - DDA3937_RS00965 0.32 +0.9 222,951 - DDA3937_RS00965 0.32 +1.6 222,951 - DDA3937_RS00965 0.32 +1.2 222,951 - DDA3937_RS00965 0.32 -2.1 222,951 - DDA3937_RS00965 0.32 +1.4 222,951 - DDA3937_RS00965 0.32 -0.7 222,965 + DDA3937_RS00965 0.34 -0.1 222,966 - DDA3937_RS00965 0.34 +0.2 222,966 - DDA3937_RS00965 0.34 -1.8 223,068 - DDA3937_RS00965 0.48 +0.4 223,122 + DDA3937_RS00965 0.55 -0.5 223,123 - DDA3937_RS00965 0.55 -0.9 223,161 + DDA3937_RS00965 0.61 +0.3 223,164 + DDA3937_RS00965 0.61 -1.7 223,164 + DDA3937_RS00965 0.61 -0.0 223,209 + DDA3937_RS00965 0.67 +0.3 223,210 - DDA3937_RS00965 0.67 +1.4 223,210 - DDA3937_RS00965 0.67 -0.6 223,228 + DDA3937_RS00965 0.70 -1.1 223,229 - DDA3937_RS00965 0.70 +0.8 223,275 + DDA3937_RS00965 0.76 +0.3 223,275 + DDA3937_RS00965 0.76 +1.7 223,276 - DDA3937_RS00965 0.76 -1.1 223,276 - +1.3 223,277 + DDA3937_RS00965 0.76 -1.6 223,277 + DDA3937_RS00965 0.76 -2.0 223,277 + DDA3937_RS00965 0.76 -1.1 223,277 + DDA3937_RS00965 0.76 +0.1 223,277 + DDA3937_RS00965 0.76 -0.1 223,277 + DDA3937_RS00965 0.76 +0.3 223,277 + DDA3937_RS00965 0.76 -0.8 223,278 - DDA3937_RS00965 0.77 -1.8 223,278 - DDA3937_RS00965 0.77 +0.7 223,311 + DDA3937_RS00965 0.81 +0.4 223,339 + DDA3937_RS00965 0.85 -1.6 223,340 - DDA3937_RS00965 0.85 +1.6 223,411 + -0.3 223,527 - -0.6 223,527 - -0.7 223,527 - -0.4 223,571 - -0.1 223,631 + -2.1 223,631 + +0.3 223,642 + +0.9 223,642 + +0.3 223,643 - +0.7 223,643 - +1.2 223,643 - -0.1 223,992 + DDA3937_RS00970 0.40 -2.1 223,992 + +1.9 223,993 - DDA3937_RS00970 0.40 -1.7 224,333 + DDA3937_RS00970 0.77 +0.3 224,337 - DDA3937_RS00970 0.77 -0.7 224,392 - DDA3937_RS00970 0.83 -0.7 224,392 - DDA3937_RS00970 0.83 +0.8 224,404 - DDA3937_RS00970 0.85 -1.1 224,439 + DDA3937_RS00970 0.89 +0.7 224,440 - DDA3937_RS00970 0.89 -0.5 224,440 - DDA3937_RS00970 0.89 -1.6
Or see this region's nucleotide sequence