Experiment: Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS00910 and DDA3937_RS00915 are separated by 157 nucleotides DDA3937_RS00915 and DDA3937_RS00920 are separated by 9 nucleotides DDA3937_RS00920 and DDA3937_RS00925 are separated by 85 nucleotides
DDA3937_RS00910: DDA3937_RS00910 - 1,4-dihydroxy-2-naphthoate polyprenyltransferase, at 208,870 to 209,787
_RS00910
DDA3937_RS00915: DDA3937_RS00915 - HslU--HslV peptidase ATPase subunit, at 209,945 to 211,276
_RS00915
DDA3937_RS00920: DDA3937_RS00920 - ATP-dependent protease subunit HslV, at 211,286 to 211,816
_RS00920
DDA3937_RS00925: DDA3937_RS00925 - cell division protein FtsN, at 211,902 to 212,831
_RS00925
Position (kb) 209
210
211
212 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 208.950 kb on + strand at 208.951 kb on - strand at 208.979 kb on + strand, within DDA3937_RS00910 at 208.980 kb on - strand, within DDA3937_RS00910 at 209.037 kb on + strand, within DDA3937_RS00910 at 209.037 kb on + strand, within DDA3937_RS00910 at 209.037 kb on + strand, within DDA3937_RS00910 at 209.038 kb on - strand, within DDA3937_RS00910 at 209.038 kb on - strand, within DDA3937_RS00910 at 209.045 kb on + strand, within DDA3937_RS00910 at 209.045 kb on + strand, within DDA3937_RS00910 at 209.045 kb on + strand, within DDA3937_RS00910 at 209.092 kb on + strand, within DDA3937_RS00910 at 209.092 kb on + strand, within DDA3937_RS00910 at 209.092 kb on + strand, within DDA3937_RS00910 at 209.092 kb on + strand, within DDA3937_RS00910 at 209.093 kb on - strand, within DDA3937_RS00910 at 209.093 kb on - strand, within DDA3937_RS00910 at 209.093 kb on - strand, within DDA3937_RS00910 at 209.093 kb on - strand, within DDA3937_RS00910 at 209.102 kb on + strand, within DDA3937_RS00910 at 209.270 kb on + strand, within DDA3937_RS00910 at 209.270 kb on + strand, within DDA3937_RS00910 at 209.270 kb on + strand, within DDA3937_RS00910 at 209.270 kb on + strand, within DDA3937_RS00910 at 209.270 kb on + strand, within DDA3937_RS00910 at 209.271 kb on - strand, within DDA3937_RS00910 at 209.273 kb on + strand, within DDA3937_RS00910 at 209.274 kb on - strand, within DDA3937_RS00910 at 209.274 kb on - strand, within DDA3937_RS00910 at 209.336 kb on + strand, within DDA3937_RS00910 at 209.336 kb on + strand, within DDA3937_RS00910 at 209.336 kb on + strand, within DDA3937_RS00910 at 209.336 kb on + strand, within DDA3937_RS00910 at 209.336 kb on + strand, within DDA3937_RS00910 at 209.336 kb on + strand, within DDA3937_RS00910 at 209.337 kb on - strand, within DDA3937_RS00910 at 209.337 kb on - strand, within DDA3937_RS00910 at 209.337 kb on - strand, within DDA3937_RS00910 at 209.337 kb on - strand, within DDA3937_RS00910 at 209.337 kb on - strand, within DDA3937_RS00910 at 209.337 kb on - strand, within DDA3937_RS00910 at 209.337 kb on - strand, within DDA3937_RS00910 at 209.337 kb on - strand, within DDA3937_RS00910 at 209.343 kb on - strand, within DDA3937_RS00910 at 209.349 kb on + strand, within DDA3937_RS00910 at 209.349 kb on + strand, within DDA3937_RS00910 at 209.361 kb on + strand, within DDA3937_RS00910 at 209.362 kb on - strand, within DDA3937_RS00910 at 209.362 kb on - strand, within DDA3937_RS00910 at 209.363 kb on + strand, within DDA3937_RS00910 at 209.363 kb on + strand, within DDA3937_RS00910 at 209.363 kb on + strand, within DDA3937_RS00910 at 209.363 kb on + strand, within DDA3937_RS00910 at 209.363 kb on + strand, within DDA3937_RS00910 at 209.363 kb on + strand, within DDA3937_RS00910 at 209.364 kb on - strand, within DDA3937_RS00910 at 209.364 kb on - strand, within DDA3937_RS00910 at 209.364 kb on - strand, within DDA3937_RS00910 at 209.364 kb on - strand, within DDA3937_RS00910 at 209.364 kb on - strand, within DDA3937_RS00910 at 209.364 kb on - strand, within DDA3937_RS00910 at 209.364 kb on - strand, within DDA3937_RS00910 at 209.364 kb on - strand at 209.364 kb on - strand, within DDA3937_RS00910 at 209.364 kb on - strand, within DDA3937_RS00910 at 209.364 kb on - strand, within DDA3937_RS00910 at 209.367 kb on + strand, within DDA3937_RS00910 at 209.367 kb on + strand, within DDA3937_RS00910 at 209.367 kb on + strand, within DDA3937_RS00910 at 209.367 kb on + strand, within DDA3937_RS00910 at 209.368 kb on - strand, within DDA3937_RS00910 at 209.368 kb on - strand, within DDA3937_RS00910 at 209.368 kb on - strand, within DDA3937_RS00910 at 209.588 kb on + strand, within DDA3937_RS00910 at 209.589 kb on - strand, within DDA3937_RS00910 at 209.595 kb on + strand, within DDA3937_RS00910 at 209.769 kb on + strand at 209.769 kb on + strand at 209.769 kb on + strand at 209.769 kb on + strand at 209.769 kb on + strand at 209.769 kb on + strand at 209.769 kb on + strand at 209.769 kb on + strand at 209.770 kb on - strand at 209.770 kb on - strand at 209.770 kb on - strand at 209.770 kb on - strand at 209.770 kb on - strand at 209.770 kb on - strand at 209.770 kb on - strand at 209.770 kb on - strand at 209.770 kb on - strand at 209.810 kb on + strand at 209.824 kb on - strand at 209.824 kb on - strand at 209.879 kb on + strand at 209.880 kb on - strand at 209.880 kb on - strand at 209.946 kb on + strand at 209.946 kb on + strand at 209.947 kb on - strand at 209.947 kb on - strand at 209.948 kb on + strand at 209.948 kb on + strand at 209.953 kb on + strand at 209.953 kb on + strand at 209.954 kb on - strand at 209.979 kb on - strand at 209.979 kb on - strand at 210.002 kb on + strand at 210.002 kb on + strand at 210.006 kb on + strand at 210.250 kb on + strand, within DDA3937_RS00915 at 210.250 kb on + strand, within DDA3937_RS00915 at 210.250 kb on + strand, within DDA3937_RS00915 at 210.413 kb on - strand, within DDA3937_RS00915 at 210.479 kb on - strand, within DDA3937_RS00915 at 210.559 kb on + strand, within DDA3937_RS00915 at 210.559 kb on + strand, within DDA3937_RS00915 at 210.732 kb on - strand, within DDA3937_RS00915 at 211.006 kb on - strand, within DDA3937_RS00915 at 211.228 kb on + strand at 211.229 kb on - strand at 211.229 kb on - strand at 211.230 kb on + strand at 211.230 kb on + strand at 211.230 kb on + strand at 211.230 kb on + strand at 211.230 kb on + strand at 211.230 kb on + strand at 211.230 kb on + strand at 211.230 kb on + strand at 211.230 kb on + strand at 211.230 kb on + strand at 211.230 kb on + strand at 211.230 kb on + strand at 211.230 kb on + strand at 211.230 kb on + strand at 211.230 kb on + strand at 211.230 kb on + strand at 211.231 kb on - strand at 211.231 kb on - strand at 211.231 kb on - strand at 211.231 kb on - strand at 211.231 kb on - strand at 211.231 kb on - strand at 211.231 kb on - strand at 211.231 kb on - strand at 211.231 kb on - strand at 211.231 kb on - strand at 211.231 kb on - strand at 211.231 kb on - strand at 211.231 kb on - strand at 211.234 kb on + strand at 211.234 kb on + strand at 211.234 kb on + strand at 211.234 kb on + strand at 211.235 kb on - strand at 211.235 kb on - strand at 211.235 kb on - strand at 211.235 kb on - strand at 211.250 kb on + strand at 211.250 kb on + strand at 211.276 kb on + strand at 211.276 kb on + strand at 211.276 kb on + strand at 211.277 kb on - strand at 211.277 kb on - strand at 211.287 kb on + strand at 211.288 kb on - strand at 211.302 kb on - strand at 211.332 kb on + strand at 211.332 kb on + strand at 211.332 kb on + strand at 211.333 kb on - strand at 211.333 kb on - strand at 211.343 kb on - strand, within DDA3937_RS00920 at 211.343 kb on - strand, within DDA3937_RS00920 at 211.388 kb on + strand, within DDA3937_RS00920 at 211.701 kb on + strand, within DDA3937_RS00920 at 211.701 kb on + strand, within DDA3937_RS00920 at 211.702 kb on - strand, within DDA3937_RS00920 at 211.736 kb on + strand, within DDA3937_RS00920 at 211.797 kb on - strand at 211.803 kb on - strand at 211.803 kb on - strand at 211.867 kb on - strand at 211.876 kb on - strand at 211.991 kb on - strand at 212.226 kb on + strand, within DDA3937_RS00925 at 212.273 kb on + strand, within DDA3937_RS00925 at 212.274 kb on - strand, within DDA3937_RS00925 at 212.274 kb on - strand, within DDA3937_RS00925
Per-strain Table
Position Strand Gene LocusTag Fraction Atlantic remove 208,950 + -0.9 208,951 - -0.5 208,979 + DDA3937_RS00910 0.12 -1.3 208,980 - DDA3937_RS00910 0.12 -1.6 209,037 + DDA3937_RS00910 0.18 -1.3 209,037 + DDA3937_RS00910 0.18 -1.3 209,037 + DDA3937_RS00910 0.18 -0.9 209,038 - DDA3937_RS00910 0.18 -1.4 209,038 - DDA3937_RS00910 0.18 -0.0 209,045 + DDA3937_RS00910 0.19 -2.1 209,045 + DDA3937_RS00910 0.19 -1.8 209,045 + DDA3937_RS00910 0.19 -0.9 209,092 + DDA3937_RS00910 0.24 -1.5 209,092 + DDA3937_RS00910 0.24 +0.6 209,092 + DDA3937_RS00910 0.24 +0.9 209,092 + DDA3937_RS00910 0.24 -0.5 209,093 - DDA3937_RS00910 0.24 +0.5 209,093 - DDA3937_RS00910 0.24 -0.9 209,093 - DDA3937_RS00910 0.24 -1.2 209,093 - DDA3937_RS00910 0.24 -2.0 209,102 + DDA3937_RS00910 0.25 -0.7 209,270 + DDA3937_RS00910 0.44 -0.7 209,270 + DDA3937_RS00910 0.44 -1.6 209,270 + DDA3937_RS00910 0.44 +1.5 209,270 + DDA3937_RS00910 0.44 -0.3 209,270 + DDA3937_RS00910 0.44 -0.8 209,271 - DDA3937_RS00910 0.44 -1.9 209,273 + DDA3937_RS00910 0.44 -0.6 209,274 - DDA3937_RS00910 0.44 -2.0 209,274 - DDA3937_RS00910 0.44 -0.0 209,336 + DDA3937_RS00910 0.51 -0.7 209,336 + DDA3937_RS00910 0.51 +0.3 209,336 + DDA3937_RS00910 0.51 -0.6 209,336 + DDA3937_RS00910 0.51 -0.9 209,336 + DDA3937_RS00910 0.51 -2.0 209,336 + DDA3937_RS00910 0.51 -0.9 209,337 - DDA3937_RS00910 0.51 -0.9 209,337 - DDA3937_RS00910 0.51 -0.1 209,337 - DDA3937_RS00910 0.51 -0.5 209,337 - DDA3937_RS00910 0.51 -0.5 209,337 - DDA3937_RS00910 0.51 -1.0 209,337 - DDA3937_RS00910 0.51 -1.5 209,337 - DDA3937_RS00910 0.51 +0.8 209,337 - DDA3937_RS00910 0.51 -0.1 209,343 - DDA3937_RS00910 0.52 -1.7 209,349 + DDA3937_RS00910 0.52 -1.0 209,349 + DDA3937_RS00910 0.52 -1.7 209,361 + DDA3937_RS00910 0.53 -2.7 209,362 - DDA3937_RS00910 0.54 +3.4 209,362 - DDA3937_RS00910 0.54 -1.5 209,363 + DDA3937_RS00910 0.54 -1.5 209,363 + DDA3937_RS00910 0.54 +0.2 209,363 + DDA3937_RS00910 0.54 -4.2 209,363 + DDA3937_RS00910 0.54 -1.1 209,363 + DDA3937_RS00910 0.54 +0.5 209,363 + DDA3937_RS00910 0.54 -2.2 209,364 - DDA3937_RS00910 0.54 -1.6 209,364 - DDA3937_RS00910 0.54 -0.5 209,364 - DDA3937_RS00910 0.54 -2.0 209,364 - DDA3937_RS00910 0.54 -0.9 209,364 - DDA3937_RS00910 0.54 -0.8 209,364 - DDA3937_RS00910 0.54 -1.5 209,364 - DDA3937_RS00910 0.54 -2.1 209,364 - -0.5 209,364 - DDA3937_RS00910 0.54 +0.2 209,364 - DDA3937_RS00910 0.54 -0.2 209,364 - DDA3937_RS00910 0.54 -0.7 209,367 + DDA3937_RS00910 0.54 +0.0 209,367 + DDA3937_RS00910 0.54 -1.8 209,367 + DDA3937_RS00910 0.54 -0.5 209,367 + DDA3937_RS00910 0.54 -0.6 209,368 - DDA3937_RS00910 0.54 -2.5 209,368 - DDA3937_RS00910 0.54 -1.7 209,368 - DDA3937_RS00910 0.54 -2.2 209,588 + DDA3937_RS00910 0.78 -0.4 209,589 - DDA3937_RS00910 0.78 -0.7 209,595 + DDA3937_RS00910 0.79 -0.5 209,769 + +0.7 209,769 + -2.0 209,769 + -2.2 209,769 + +2.1 209,769 + -0.3 209,769 + -0.3 209,769 + -1.6 209,769 + -1.9 209,770 - -1.1 209,770 - -0.3 209,770 - +1.1 209,770 - -1.1 209,770 - -2.6 209,770 - +0.5 209,770 - +0.4 209,770 - -0.1 209,770 - -0.4 209,810 + +1.9 209,824 - -0.0 209,824 - -0.6 209,879 + -0.0 209,880 - -0.1 209,880 - +0.4 209,946 + -0.3 209,946 + +0.3 209,947 - -1.4 209,947 - -2.4 209,948 + +0.1 209,948 + +0.3 209,953 + -0.9 209,953 + -0.9 209,954 - +0.4 209,979 - +0.9 209,979 - -2.4 210,002 + -2.5 210,002 + +0.6 210,006 + -1.7 210,250 + DDA3937_RS00915 0.23 -0.5 210,250 + DDA3937_RS00915 0.23 -1.2 210,250 + DDA3937_RS00915 0.23 -0.8 210,413 - DDA3937_RS00915 0.35 -1.7 210,479 - DDA3937_RS00915 0.40 -2.4 210,559 + DDA3937_RS00915 0.46 -0.1 210,559 + DDA3937_RS00915 0.46 -0.2 210,732 - DDA3937_RS00915 0.59 -0.7 211,006 - DDA3937_RS00915 0.80 -1.4 211,228 + -0.1 211,229 - -0.6 211,229 - -0.9 211,230 + -1.5 211,230 + -0.1 211,230 + -1.1 211,230 + -1.6 211,230 + +0.2 211,230 + -0.2 211,230 + +0.4 211,230 + -0.7 211,230 + -0.6 211,230 + -0.5 211,230 + +0.3 211,230 + +0.4 211,230 + -1.5 211,230 + -2.4 211,230 + -2.3 211,230 + -0.7 211,231 - -3.8 211,231 - -0.1 211,231 - -0.8 211,231 - -0.6 211,231 - -0.9 211,231 - +0.3 211,231 - +0.1 211,231 - +0.4 211,231 - +0.5 211,231 - -1.3 211,231 - -1.5 211,231 - -0.1 211,231 - -0.8 211,234 + -0.9 211,234 + -1.6 211,234 + -0.1 211,234 + +0.4 211,235 - -2.1 211,235 - -1.1 211,235 - +0.7 211,235 - -0.9 211,250 + -0.5 211,250 + +2.0 211,276 + +0.8 211,276 + +1.9 211,276 + +2.1 211,277 - -2.3 211,277 - +0.3 211,287 + -1.5 211,288 - -1.3 211,302 - +0.9 211,332 + -0.5 211,332 + +0.1 211,332 + -1.6 211,333 - +0.9 211,333 - -1.6 211,343 - DDA3937_RS00920 0.11 -2.5 211,343 - DDA3937_RS00920 0.11 -3.7 211,388 + DDA3937_RS00920 0.19 -1.8 211,701 + DDA3937_RS00920 0.78 -3.2 211,701 + DDA3937_RS00920 0.78 -1.6 211,702 - DDA3937_RS00920 0.78 -0.5 211,736 + DDA3937_RS00920 0.85 -0.5 211,797 - +1.0 211,803 - -0.7 211,803 - -2.2 211,867 - +1.6 211,876 - -0.6 211,991 - -1.2 212,226 + DDA3937_RS00925 0.35 -0.1 212,273 + DDA3937_RS00925 0.40 -0.5 212,274 - DDA3937_RS00925 0.40 -1.5 212,274 - DDA3937_RS00925 0.40 +0.6
Or see this region's nucleotide sequence