Experiment: Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS00650 and DDA3937_RS00655 are separated by 118 nucleotides DDA3937_RS00655 and DDA3937_RS00660 are separated by 403 nucleotides DDA3937_RS00660 and DDA3937_RS00665 are separated by 78 nucleotides
DDA3937_RS00650: DDA3937_RS00650 - RNA polymerase sigma factor RpoH, at 150,265 to 151,122
_RS00650
DDA3937_RS00655: DDA3937_RS00655 - aspartate 1-decarboxylase autocleavage activator PanM, at 151,241 to 151,678
_RS00655
DDA3937_RS00660: DDA3937_RS00660 - branched-chain amino acid ABC transporter substrate-binding protein, at 152,082 to 153,194
_RS00660
DDA3937_RS00665: DDA3937_RS00665 - high-affinity branched-chain amino acid ABC transporter permease LivH, at 153,273 to 154,199
_RS00665
Position (kb) 152
153
154 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 151.120 kb on + strand at 151.121 kb on - strand at 151.133 kb on + strand at 151.134 kb on - strand at 151.214 kb on + strand at 151.222 kb on + strand at 151.222 kb on + strand at 151.223 kb on - strand at 151.242 kb on + strand at 151.242 kb on + strand at 151.243 kb on - strand at 151.243 kb on - strand at 151.243 kb on - strand at 151.243 kb on - strand at 151.284 kb on + strand at 151.284 kb on + strand at 151.285 kb on - strand, within DDA3937_RS00655 at 151.285 kb on - strand, within DDA3937_RS00655 at 151.285 kb on - strand, within DDA3937_RS00655 at 151.428 kb on + strand, within DDA3937_RS00655 at 151.428 kb on + strand, within DDA3937_RS00655 at 151.429 kb on - strand, within DDA3937_RS00655 at 151.429 kb on - strand, within DDA3937_RS00655 at 151.429 kb on - strand, within DDA3937_RS00655 at 151.432 kb on + strand, within DDA3937_RS00655 at 151.432 kb on + strand, within DDA3937_RS00655 at 151.678 kb on + strand at 151.708 kb on + strand at 151.708 kb on + strand at 151.708 kb on + strand at 151.709 kb on - strand at 151.709 kb on - strand at 151.709 kb on - strand at 151.709 kb on - strand at 151.713 kb on + strand at 151.714 kb on - strand at 151.740 kb on + strand at 151.806 kb on - strand at 151.818 kb on + strand at 151.819 kb on - strand at 151.829 kb on + strand at 151.962 kb on - strand at 151.980 kb on + strand at 151.980 kb on + strand at 151.981 kb on - strand at 151.981 kb on - strand at 152.001 kb on + strand at 152.002 kb on - strand at 152.002 kb on - strand at 152.002 kb on - strand at 152.017 kb on + strand at 152.017 kb on + strand at 152.018 kb on - strand at 152.022 kb on - strand at 152.040 kb on + strand at 152.040 kb on + strand at 152.040 kb on + strand at 152.040 kb on + strand at 152.041 kb on - strand at 152.041 kb on - strand at 152.044 kb on + strand at 152.045 kb on - strand at 152.045 kb on - strand at 152.298 kb on + strand, within DDA3937_RS00660 at 152.299 kb on - strand, within DDA3937_RS00660 at 152.360 kb on + strand, within DDA3937_RS00660 at 152.360 kb on + strand, within DDA3937_RS00660 at 152.367 kb on + strand, within DDA3937_RS00660 at 152.367 kb on + strand, within DDA3937_RS00660 at 152.368 kb on - strand, within DDA3937_RS00660 at 152.418 kb on + strand, within DDA3937_RS00660 at 152.418 kb on + strand, within DDA3937_RS00660 at 152.419 kb on - strand, within DDA3937_RS00660 at 152.419 kb on - strand, within DDA3937_RS00660 at 152.419 kb on - strand, within DDA3937_RS00660 at 152.419 kb on - strand, within DDA3937_RS00660 at 152.475 kb on - strand, within DDA3937_RS00660 at 152.484 kb on + strand, within DDA3937_RS00660 at 152.485 kb on - strand, within DDA3937_RS00660 at 152.485 kb on - strand, within DDA3937_RS00660 at 152.495 kb on + strand, within DDA3937_RS00660 at 152.496 kb on - strand, within DDA3937_RS00660 at 152.544 kb on + strand, within DDA3937_RS00660 at 152.544 kb on + strand, within DDA3937_RS00660 at 152.545 kb on - strand, within DDA3937_RS00660 at 152.602 kb on - strand, within DDA3937_RS00660 at 152.626 kb on + strand, within DDA3937_RS00660 at 152.626 kb on + strand, within DDA3937_RS00660 at 152.654 kb on + strand, within DDA3937_RS00660 at 152.745 kb on + strand, within DDA3937_RS00660 at 152.745 kb on + strand, within DDA3937_RS00660 at 152.745 kb on + strand, within DDA3937_RS00660 at 152.757 kb on + strand, within DDA3937_RS00660 at 152.758 kb on - strand at 152.761 kb on - strand, within DDA3937_RS00660 at 152.907 kb on + strand, within DDA3937_RS00660 at 152.907 kb on + strand, within DDA3937_RS00660 at 152.994 kb on + strand, within DDA3937_RS00660 at 152.994 kb on + strand, within DDA3937_RS00660 at 152.994 kb on + strand, within DDA3937_RS00660 at 152.995 kb on - strand, within DDA3937_RS00660 at 152.995 kb on - strand, within DDA3937_RS00660 at 153.151 kb on + strand at 153.173 kb on + strand at 153.174 kb on - strand at 153.174 kb on - strand at 153.211 kb on + strand at 153.212 kb on - strand at 153.212 kb on - strand at 153.262 kb on - strand at 153.262 kb on - strand at 153.268 kb on - strand at 153.272 kb on + strand at 153.273 kb on - strand at 153.273 kb on - strand at 153.292 kb on - strand at 153.320 kb on - strand at 153.336 kb on + strand at 153.336 kb on + strand at 153.336 kb on + strand at 153.336 kb on + strand at 153.337 kb on - strand at 153.337 kb on - strand at 153.337 kb on - strand at 153.337 kb on - strand at 153.337 kb on - strand at 153.337 kb on - strand at 153.358 kb on - strand at 153.389 kb on + strand, within DDA3937_RS00665 at 153.389 kb on + strand, within DDA3937_RS00665 at 153.390 kb on - strand, within DDA3937_RS00665 at 153.390 kb on - strand, within DDA3937_RS00665 at 153.390 kb on - strand, within DDA3937_RS00665 at 153.390 kb on - strand, within DDA3937_RS00665 at 153.411 kb on + strand, within DDA3937_RS00665 at 153.411 kb on + strand, within DDA3937_RS00665 at 153.411 kb on + strand, within DDA3937_RS00665 at 153.411 kb on + strand, within DDA3937_RS00665 at 153.411 kb on + strand, within DDA3937_RS00665 at 153.411 kb on + strand, within DDA3937_RS00665 at 153.411 kb on + strand, within DDA3937_RS00665 at 153.411 kb on + strand, within DDA3937_RS00665 at 153.411 kb on + strand, within DDA3937_RS00665 at 153.412 kb on - strand, within DDA3937_RS00665 at 153.412 kb on - strand, within DDA3937_RS00665 at 153.413 kb on + strand, within DDA3937_RS00665 at 153.413 kb on + strand, within DDA3937_RS00665 at 153.413 kb on + strand, within DDA3937_RS00665 at 153.413 kb on + strand, within DDA3937_RS00665 at 153.414 kb on - strand, within DDA3937_RS00665 at 153.414 kb on - strand, within DDA3937_RS00665 at 153.422 kb on + strand, within DDA3937_RS00665 at 153.422 kb on + strand, within DDA3937_RS00665 at 153.423 kb on - strand, within DDA3937_RS00665 at 153.426 kb on + strand, within DDA3937_RS00665 at 153.426 kb on + strand, within DDA3937_RS00665 at 153.426 kb on + strand, within DDA3937_RS00665 at 153.426 kb on + strand, within DDA3937_RS00665 at 153.426 kb on + strand, within DDA3937_RS00665 at 153.426 kb on + strand, within DDA3937_RS00665 at 153.426 kb on + strand, within DDA3937_RS00665 at 153.426 kb on + strand, within DDA3937_RS00665 at 153.426 kb on + strand, within DDA3937_RS00665 at 153.427 kb on - strand, within DDA3937_RS00665 at 153.427 kb on - strand, within DDA3937_RS00665 at 153.427 kb on - strand, within DDA3937_RS00665 at 153.427 kb on - strand, within DDA3937_RS00665 at 153.427 kb on - strand, within DDA3937_RS00665 at 153.427 kb on - strand, within DDA3937_RS00665 at 153.427 kb on - strand, within DDA3937_RS00665 at 153.427 kb on - strand, within DDA3937_RS00665 at 153.427 kb on - strand, within DDA3937_RS00665 at 153.427 kb on - strand, within DDA3937_RS00665 at 153.531 kb on + strand, within DDA3937_RS00665 at 153.558 kb on + strand, within DDA3937_RS00665 at 153.559 kb on - strand, within DDA3937_RS00665 at 153.611 kb on + strand, within DDA3937_RS00665 at 153.611 kb on + strand, within DDA3937_RS00665 at 153.611 kb on + strand, within DDA3937_RS00665 at 153.612 kb on - strand, within DDA3937_RS00665 at 153.612 kb on - strand, within DDA3937_RS00665 at 153.612 kb on - strand, within DDA3937_RS00665 at 153.633 kb on + strand, within DDA3937_RS00665 at 153.633 kb on + strand, within DDA3937_RS00665 at 153.633 kb on + strand, within DDA3937_RS00665 at 153.633 kb on + strand, within DDA3937_RS00665 at 153.633 kb on + strand, within DDA3937_RS00665 at 153.633 kb on + strand, within DDA3937_RS00665 at 153.633 kb on + strand, within DDA3937_RS00665 at 153.634 kb on - strand, within DDA3937_RS00665 at 153.634 kb on - strand, within DDA3937_RS00665 at 153.634 kb on - strand, within DDA3937_RS00665 at 153.801 kb on + strand, within DDA3937_RS00665 at 153.951 kb on + strand, within DDA3937_RS00665 at 153.952 kb on - strand, within DDA3937_RS00665 at 153.952 kb on - strand, within DDA3937_RS00665 at 153.962 kb on + strand, within DDA3937_RS00665 at 153.969 kb on + strand, within DDA3937_RS00665 at 153.970 kb on - strand, within DDA3937_RS00665 at 153.970 kb on - strand, within DDA3937_RS00665 at 153.970 kb on - strand, within DDA3937_RS00665 at 154.107 kb on + strand at 154.107 kb on + strand at 154.108 kb on - strand at 154.108 kb on - strand at 154.108 kb on - strand at 154.108 kb on - strand at 154.109 kb on + strand at 154.109 kb on + strand at 154.109 kb on + strand at 154.109 kb on + strand at 154.109 kb on + strand at 154.109 kb on + strand at 154.110 kb on - strand at 154.110 kb on - strand at 154.110 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Atlantic remove 151,120 + -0.7 151,121 - -0.7 151,133 + +0.9 151,134 - +1.1 151,214 + -2.7 151,222 + -0.3 151,222 + -2.4 151,223 - +0.0 151,242 + -0.8 151,242 + -0.8 151,243 - -0.1 151,243 - -1.7 151,243 - -1.6 151,243 - +1.9 151,284 + -0.9 151,284 + -0.4 151,285 - DDA3937_RS00655 0.10 +0.2 151,285 - DDA3937_RS00655 0.10 -1.4 151,285 - DDA3937_RS00655 0.10 -0.8 151,428 + DDA3937_RS00655 0.43 +1.0 151,428 + DDA3937_RS00655 0.43 +0.5 151,429 - DDA3937_RS00655 0.43 -1.2 151,429 - DDA3937_RS00655 0.43 -1.1 151,429 - DDA3937_RS00655 0.43 +1.4 151,432 + DDA3937_RS00655 0.44 -2.4 151,432 + DDA3937_RS00655 0.44 -0.2 151,678 + -0.0 151,708 + -2.9 151,708 + +0.2 151,708 + +0.4 151,709 - -1.8 151,709 - -1.7 151,709 - -2.0 151,709 - +1.0 151,713 + +1.0 151,714 - -0.2 151,740 + -0.8 151,806 - -0.1 151,818 + -0.5 151,819 - -1.5 151,829 + -3.0 151,962 - -0.4 151,980 + -0.5 151,980 + +0.3 151,981 - -2.0 151,981 - -0.4 152,001 + -1.0 152,002 - +0.3 152,002 - -2.1 152,002 - -2.4 152,017 + -0.7 152,017 + -0.4 152,018 - +1.2 152,022 - +0.1 152,040 + -1.6 152,040 + -0.4 152,040 + -0.1 152,040 + -0.0 152,041 - -1.2 152,041 - -1.4 152,044 + +2.5 152,045 - +0.3 152,045 - +0.8 152,298 + DDA3937_RS00660 0.19 -0.7 152,299 - DDA3937_RS00660 0.19 -0.2 152,360 + DDA3937_RS00660 0.25 -0.1 152,360 + DDA3937_RS00660 0.25 -0.3 152,367 + DDA3937_RS00660 0.26 -0.3 152,367 + DDA3937_RS00660 0.26 -0.2 152,368 - DDA3937_RS00660 0.26 +0.1 152,418 + DDA3937_RS00660 0.30 +1.2 152,418 + DDA3937_RS00660 0.30 +0.6 152,419 - DDA3937_RS00660 0.30 -0.9 152,419 - DDA3937_RS00660 0.30 +0.4 152,419 - DDA3937_RS00660 0.30 +1.0 152,419 - DDA3937_RS00660 0.30 -0.7 152,475 - DDA3937_RS00660 0.35 -1.5 152,484 + DDA3937_RS00660 0.36 +0.2 152,485 - DDA3937_RS00660 0.36 -0.1 152,485 - DDA3937_RS00660 0.36 -0.0 152,495 + DDA3937_RS00660 0.37 +0.2 152,496 - DDA3937_RS00660 0.37 -0.4 152,544 + DDA3937_RS00660 0.42 -1.7 152,544 + DDA3937_RS00660 0.42 +0.8 152,545 - DDA3937_RS00660 0.42 -0.0 152,602 - DDA3937_RS00660 0.47 -0.0 152,626 + DDA3937_RS00660 0.49 +0.0 152,626 + DDA3937_RS00660 0.49 +0.1 152,654 + DDA3937_RS00660 0.51 -1.3 152,745 + DDA3937_RS00660 0.60 +0.6 152,745 + DDA3937_RS00660 0.60 +0.6 152,745 + DDA3937_RS00660 0.60 +1.1 152,757 + DDA3937_RS00660 0.61 -2.5 152,758 - +0.9 152,761 - DDA3937_RS00660 0.61 -0.7 152,907 + DDA3937_RS00660 0.74 +2.5 152,907 + DDA3937_RS00660 0.74 +0.2 152,994 + DDA3937_RS00660 0.82 -2.0 152,994 + DDA3937_RS00660 0.82 -3.1 152,994 + DDA3937_RS00660 0.82 +0.2 152,995 - DDA3937_RS00660 0.82 +0.8 152,995 - DDA3937_RS00660 0.82 -2.6 153,151 + -0.5 153,173 + +0.1 153,174 - +2.4 153,174 - -0.7 153,211 + -1.0 153,212 - -2.2 153,212 - -1.0 153,262 - +0.9 153,262 - +1.1 153,268 - -1.0 153,272 + -0.7 153,273 - -0.2 153,273 - -1.1 153,292 - +0.6 153,320 - -1.1 153,336 + +4.1 153,336 + -0.4 153,336 + +0.1 153,336 + -0.1 153,337 - -0.9 153,337 - -0.8 153,337 - -2.5 153,337 - +0.7 153,337 - -0.2 153,337 - +0.8 153,358 - +0.1 153,389 + DDA3937_RS00665 0.13 -0.5 153,389 + DDA3937_RS00665 0.13 -1.6 153,390 - DDA3937_RS00665 0.13 +0.4 153,390 - DDA3937_RS00665 0.13 -1.3 153,390 - DDA3937_RS00665 0.13 +0.7 153,390 - DDA3937_RS00665 0.13 +0.7 153,411 + DDA3937_RS00665 0.15 +0.1 153,411 + DDA3937_RS00665 0.15 -0.9 153,411 + DDA3937_RS00665 0.15 -0.1 153,411 + DDA3937_RS00665 0.15 -0.6 153,411 + DDA3937_RS00665 0.15 -0.7 153,411 + DDA3937_RS00665 0.15 -0.7 153,411 + DDA3937_RS00665 0.15 +1.0 153,411 + DDA3937_RS00665 0.15 +1.7 153,411 + DDA3937_RS00665 0.15 -0.4 153,412 - DDA3937_RS00665 0.15 -2.8 153,412 - DDA3937_RS00665 0.15 +1.2 153,413 + DDA3937_RS00665 0.15 -0.4 153,413 + DDA3937_RS00665 0.15 -0.5 153,413 + DDA3937_RS00665 0.15 -0.6 153,413 + DDA3937_RS00665 0.15 -1.0 153,414 - DDA3937_RS00665 0.15 -2.3 153,414 - DDA3937_RS00665 0.15 +0.0 153,422 + DDA3937_RS00665 0.16 -0.1 153,422 + DDA3937_RS00665 0.16 -0.6 153,423 - DDA3937_RS00665 0.16 +3.0 153,426 + DDA3937_RS00665 0.17 +0.2 153,426 + DDA3937_RS00665 0.17 -1.7 153,426 + DDA3937_RS00665 0.17 +0.4 153,426 + DDA3937_RS00665 0.17 +3.0 153,426 + DDA3937_RS00665 0.17 -0.1 153,426 + DDA3937_RS00665 0.17 -1.5 153,426 + DDA3937_RS00665 0.17 -1.6 153,426 + DDA3937_RS00665 0.17 -1.8 153,426 + DDA3937_RS00665 0.17 +0.5 153,427 - DDA3937_RS00665 0.17 -0.1 153,427 - DDA3937_RS00665 0.17 -1.7 153,427 - DDA3937_RS00665 0.17 +0.7 153,427 - DDA3937_RS00665 0.17 +0.2 153,427 - DDA3937_RS00665 0.17 -0.0 153,427 - DDA3937_RS00665 0.17 -0.7 153,427 - DDA3937_RS00665 0.17 -2.3 153,427 - DDA3937_RS00665 0.17 +1.9 153,427 - DDA3937_RS00665 0.17 -1.8 153,427 - DDA3937_RS00665 0.17 -0.4 153,531 + DDA3937_RS00665 0.28 -1.7 153,558 + DDA3937_RS00665 0.31 +1.7 153,559 - DDA3937_RS00665 0.31 -1.1 153,611 + DDA3937_RS00665 0.36 +0.1 153,611 + DDA3937_RS00665 0.36 -1.1 153,611 + DDA3937_RS00665 0.36 -1.3 153,612 - DDA3937_RS00665 0.37 -0.7 153,612 - DDA3937_RS00665 0.37 -0.9 153,612 - DDA3937_RS00665 0.37 -2.3 153,633 + DDA3937_RS00665 0.39 -1.4 153,633 + DDA3937_RS00665 0.39 +1.4 153,633 + DDA3937_RS00665 0.39 +3.1 153,633 + DDA3937_RS00665 0.39 +0.9 153,633 + DDA3937_RS00665 0.39 -4.0 153,633 + DDA3937_RS00665 0.39 -1.2 153,633 + DDA3937_RS00665 0.39 -1.3 153,634 - DDA3937_RS00665 0.39 -0.3 153,634 - DDA3937_RS00665 0.39 -0.1 153,634 - DDA3937_RS00665 0.39 -0.2 153,801 + DDA3937_RS00665 0.57 -0.3 153,951 + DDA3937_RS00665 0.73 +0.3 153,952 - DDA3937_RS00665 0.73 +2.3 153,952 - DDA3937_RS00665 0.73 -1.5 153,962 + DDA3937_RS00665 0.74 -1.1 153,969 + DDA3937_RS00665 0.75 -1.3 153,970 - DDA3937_RS00665 0.75 -1.8 153,970 - DDA3937_RS00665 0.75 -2.4 153,970 - DDA3937_RS00665 0.75 -1.4 154,107 + -1.5 154,107 + -0.2 154,108 - -0.1 154,108 - -1.3 154,108 - -3.1 154,108 - +1.5 154,109 + -1.3 154,109 + -1.0 154,109 + -0.7 154,109 + -0.0 154,109 + -0.3 154,109 + -1.3 154,110 - +1.1 154,110 - -0.6 154,110 - +4.9
Or see this region's nucleotide sequence