Experiment: Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS00325 and DDA3937_RS00330 are separated by 123 nucleotides DDA3937_RS00330 and DDA3937_RS00335 overlap by 17 nucleotides DDA3937_RS00335 and DDA3937_RS00340 are separated by 97 nucleotides
DDA3937_RS00325: DDA3937_RS00325 - DUF1471 domain-containing protein, at 75,807 to 76,073
_RS00325
DDA3937_RS00330: DDA3937_RS00330 - hypothetical protein, at 76,197 to 76,829
_RS00330
DDA3937_RS00335: DDA3937_RS00335 - AAA family ATPase, at 76,813 to 78,273
_RS00335
DDA3937_RS00340: DDA3937_RS00340 - NAD(P)/FAD-dependent oxidoreductase, at 78,371 to 79,555
_RS00340
Position (kb) 76
77
78
79 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 75.898 kb on + strand, within DDA3937_RS00325 at 75.899 kb on - strand, within DDA3937_RS00325 at 75.899 kb on - strand, within DDA3937_RS00325 at 75.899 kb on - strand, within DDA3937_RS00325 at 75.947 kb on + strand, within DDA3937_RS00325 at 76.055 kb on - strand at 76.065 kb on + strand at 76.065 kb on + strand at 76.066 kb on - strand at 76.066 kb on - strand at 76.066 kb on - strand at 76.066 kb on - strand at 76.066 kb on - strand at 76.071 kb on + strand at 76.071 kb on + strand at 76.072 kb on - strand at 76.072 kb on - strand at 76.072 kb on - strand at 76.072 kb on - strand at 76.072 kb on - strand at 76.079 kb on + strand at 76.079 kb on + strand at 76.079 kb on + strand at 76.079 kb on + strand at 76.080 kb on - strand at 76.080 kb on - strand at 76.080 kb on - strand at 76.083 kb on + strand at 76.083 kb on + strand at 76.083 kb on + strand at 76.083 kb on + strand at 76.083 kb on + strand at 76.084 kb on - strand at 76.085 kb on + strand at 76.086 kb on - strand at 76.118 kb on - strand at 76.118 kb on - strand at 76.124 kb on + strand at 76.125 kb on - strand at 76.125 kb on - strand at 76.125 kb on - strand at 76.243 kb on + strand at 76.341 kb on - strand, within DDA3937_RS00330 at 76.361 kb on + strand, within DDA3937_RS00330 at 76.374 kb on + strand, within DDA3937_RS00330 at 76.374 kb on + strand, within DDA3937_RS00330 at 76.374 kb on + strand, within DDA3937_RS00330 at 76.374 kb on + strand, within DDA3937_RS00330 at 76.375 kb on - strand, within DDA3937_RS00330 at 76.375 kb on - strand, within DDA3937_RS00330 at 76.375 kb on - strand, within DDA3937_RS00330 at 76.375 kb on - strand, within DDA3937_RS00330 at 76.418 kb on + strand, within DDA3937_RS00330 at 76.418 kb on + strand, within DDA3937_RS00330 at 76.418 kb on + strand, within DDA3937_RS00330 at 76.418 kb on + strand, within DDA3937_RS00330 at 76.419 kb on - strand, within DDA3937_RS00330 at 76.419 kb on - strand, within DDA3937_RS00330 at 76.422 kb on + strand, within DDA3937_RS00330 at 76.422 kb on + strand, within DDA3937_RS00330 at 76.431 kb on - strand, within DDA3937_RS00330 at 76.431 kb on - strand, within DDA3937_RS00330 at 76.478 kb on + strand, within DDA3937_RS00330 at 76.478 kb on + strand, within DDA3937_RS00330 at 76.478 kb on + strand, within DDA3937_RS00330 at 76.509 kb on + strand, within DDA3937_RS00330 at 76.565 kb on + strand, within DDA3937_RS00330 at 76.565 kb on + strand, within DDA3937_RS00330 at 76.565 kb on + strand, within DDA3937_RS00330 at 76.565 kb on + strand, within DDA3937_RS00330 at 76.566 kb on - strand, within DDA3937_RS00330 at 76.566 kb on - strand, within DDA3937_RS00330 at 76.568 kb on + strand, within DDA3937_RS00330 at 76.568 kb on + strand, within DDA3937_RS00330 at 76.568 kb on + strand, within DDA3937_RS00330 at 76.568 kb on + strand, within DDA3937_RS00330 at 76.568 kb on + strand, within DDA3937_RS00330 at 76.568 kb on + strand, within DDA3937_RS00330 at 76.569 kb on - strand, within DDA3937_RS00330 at 76.569 kb on - strand, within DDA3937_RS00330 at 76.569 kb on - strand, within DDA3937_RS00330 at 76.655 kb on + strand, within DDA3937_RS00330 at 76.682 kb on - strand, within DDA3937_RS00330 at 76.693 kb on + strand, within DDA3937_RS00330 at 76.693 kb on + strand, within DDA3937_RS00330 at 76.694 kb on - strand, within DDA3937_RS00330 at 76.808 kb on + strand at 76.809 kb on - strand at 76.815 kb on - strand at 76.815 kb on - strand at 76.834 kb on + strand at 76.853 kb on - strand at 76.855 kb on + strand at 76.855 kb on + strand at 76.855 kb on + strand at 76.856 kb on - strand at 76.916 kb on - strand at 77.028 kb on + strand, within DDA3937_RS00335 at 77.029 kb on - strand, within DDA3937_RS00335 at 77.046 kb on - strand, within DDA3937_RS00335 at 77.382 kb on + strand, within DDA3937_RS00335 at 77.382 kb on + strand, within DDA3937_RS00335 at 77.382 kb on + strand, within DDA3937_RS00335 at 77.386 kb on + strand, within DDA3937_RS00335 at 77.387 kb on - strand, within DDA3937_RS00335 at 77.568 kb on + strand, within DDA3937_RS00335 at 77.819 kb on + strand, within DDA3937_RS00335 at 77.929 kb on - strand at 77.960 kb on + strand, within DDA3937_RS00335 at 78.003 kb on + strand, within DDA3937_RS00335 at 78.036 kb on + strand, within DDA3937_RS00335 at 78.036 kb on + strand, within DDA3937_RS00335 at 78.048 kb on + strand, within DDA3937_RS00335 at 78.265 kb on + strand at 78.265 kb on + strand at 78.286 kb on - strand at 78.286 kb on - strand at 78.290 kb on - strand at 78.290 kb on - strand at 78.290 kb on - strand at 78.290 kb on - strand at 78.314 kb on + strand at 78.314 kb on + strand at 78.314 kb on + strand at 78.334 kb on + strand at 78.334 kb on + strand at 78.334 kb on + strand at 78.334 kb on + strand at 78.334 kb on + strand at 78.334 kb on + strand at 78.334 kb on + strand at 78.334 kb on + strand at 78.334 kb on + strand at 78.334 kb on + strand at 78.335 kb on - strand at 78.335 kb on - strand at 78.335 kb on - strand at 78.335 kb on - strand at 78.335 kb on - strand at 78.335 kb on - strand at 78.335 kb on - strand at 78.373 kb on - strand at 78.426 kb on + strand at 78.426 kb on + strand at 78.426 kb on + strand at 78.426 kb on + strand at 78.427 kb on - strand at 78.427 kb on - strand at 78.471 kb on + strand at 78.471 kb on + strand at 78.565 kb on - strand, within DDA3937_RS00340 at 78.836 kb on + strand, within DDA3937_RS00340 at 78.836 kb on + strand, within DDA3937_RS00340 at 78.837 kb on - strand, within DDA3937_RS00340 at 78.837 kb on - strand, within DDA3937_RS00340 at 78.837 kb on - strand, within DDA3937_RS00340 at 78.878 kb on - strand, within DDA3937_RS00340 at 78.976 kb on + strand, within DDA3937_RS00340
Per-strain Table
Position Strand Gene LocusTag Fraction Atlantic remove 75,898 + DDA3937_RS00325 0.34 +0.2 75,899 - DDA3937_RS00325 0.34 +0.1 75,899 - DDA3937_RS00325 0.34 -1.0 75,899 - DDA3937_RS00325 0.34 -0.2 75,947 + DDA3937_RS00325 0.52 +0.0 76,055 - -0.2 76,065 + -0.8 76,065 + -1.2 76,066 - +1.7 76,066 - +0.1 76,066 - -0.9 76,066 - +0.0 76,066 - +1.1 76,071 + -2.7 76,071 + -0.8 76,072 - +0.6 76,072 - +0.2 76,072 - -2.4 76,072 - -2.2 76,072 - +0.9 76,079 + -1.0 76,079 + +0.1 76,079 + +0.2 76,079 + +0.0 76,080 - +4.2 76,080 - +2.2 76,080 - -0.6 76,083 + -0.3 76,083 + -0.1 76,083 + +0.7 76,083 + +0.8 76,083 + -2.3 76,084 - -0.7 76,085 + -1.7 76,086 - -1.4 76,118 - +0.6 76,118 - -0.2 76,124 + -0.4 76,125 - -0.5 76,125 - -1.1 76,125 - +1.4 76,243 + +0.1 76,341 - DDA3937_RS00330 0.23 -1.0 76,361 + DDA3937_RS00330 0.26 +3.8 76,374 + DDA3937_RS00330 0.28 +0.1 76,374 + DDA3937_RS00330 0.28 +0.1 76,374 + DDA3937_RS00330 0.28 -1.3 76,374 + DDA3937_RS00330 0.28 -0.4 76,375 - DDA3937_RS00330 0.28 -1.3 76,375 - DDA3937_RS00330 0.28 -0.5 76,375 - DDA3937_RS00330 0.28 +0.9 76,375 - DDA3937_RS00330 0.28 +0.4 76,418 + DDA3937_RS00330 0.35 -0.9 76,418 + DDA3937_RS00330 0.35 -1.6 76,418 + DDA3937_RS00330 0.35 -2.4 76,418 + DDA3937_RS00330 0.35 -0.8 76,419 - DDA3937_RS00330 0.35 +1.0 76,419 - DDA3937_RS00330 0.35 -1.0 76,422 + DDA3937_RS00330 0.36 -0.9 76,422 + DDA3937_RS00330 0.36 -1.8 76,431 - DDA3937_RS00330 0.37 -0.4 76,431 - DDA3937_RS00330 0.37 -0.4 76,478 + DDA3937_RS00330 0.44 -0.3 76,478 + DDA3937_RS00330 0.44 -0.9 76,478 + DDA3937_RS00330 0.44 -0.1 76,509 + DDA3937_RS00330 0.49 +0.3 76,565 + DDA3937_RS00330 0.58 -2.0 76,565 + DDA3937_RS00330 0.58 +0.2 76,565 + DDA3937_RS00330 0.58 -1.1 76,565 + DDA3937_RS00330 0.58 +0.1 76,566 - DDA3937_RS00330 0.58 -1.0 76,566 - DDA3937_RS00330 0.58 -0.7 76,568 + DDA3937_RS00330 0.59 +1.3 76,568 + DDA3937_RS00330 0.59 -1.3 76,568 + DDA3937_RS00330 0.59 -1.6 76,568 + DDA3937_RS00330 0.59 +0.4 76,568 + DDA3937_RS00330 0.59 -1.6 76,568 + DDA3937_RS00330 0.59 -1.3 76,569 - DDA3937_RS00330 0.59 -1.7 76,569 - DDA3937_RS00330 0.59 +0.9 76,569 - DDA3937_RS00330 0.59 +1.0 76,655 + DDA3937_RS00330 0.72 +0.1 76,682 - DDA3937_RS00330 0.77 -0.1 76,693 + DDA3937_RS00330 0.78 -1.7 76,693 + DDA3937_RS00330 0.78 -0.4 76,694 - DDA3937_RS00330 0.79 -2.0 76,808 + +1.7 76,809 - +1.3 76,815 - -0.5 76,815 - -0.2 76,834 + -0.9 76,853 - +0.3 76,855 + -0.2 76,855 + -1.7 76,855 + +0.3 76,856 - -0.7 76,916 - -0.7 77,028 + DDA3937_RS00335 0.15 -0.1 77,029 - DDA3937_RS00335 0.15 -0.5 77,046 - DDA3937_RS00335 0.16 -0.8 77,382 + DDA3937_RS00335 0.39 -0.3 77,382 + DDA3937_RS00335 0.39 -2.9 77,382 + DDA3937_RS00335 0.39 -2.1 77,386 + DDA3937_RS00335 0.39 -0.9 77,387 - DDA3937_RS00335 0.39 -0.9 77,568 + DDA3937_RS00335 0.52 +0.2 77,819 + DDA3937_RS00335 0.69 -1.9 77,929 - -0.1 77,960 + DDA3937_RS00335 0.79 -1.4 78,003 + DDA3937_RS00335 0.81 -0.6 78,036 + DDA3937_RS00335 0.84 -0.7 78,036 + DDA3937_RS00335 0.84 -0.9 78,048 + DDA3937_RS00335 0.85 -1.6 78,265 + +1.4 78,265 + -0.8 78,286 - +1.0 78,286 - -2.2 78,290 - -0.2 78,290 - -0.8 78,290 - -1.2 78,290 - +0.9 78,314 + -1.8 78,314 + -0.5 78,314 + +0.3 78,334 + -0.3 78,334 + -0.2 78,334 + -0.6 78,334 + -0.2 78,334 + -0.3 78,334 + +0.3 78,334 + -0.3 78,334 + +1.3 78,334 + -1.2 78,334 + -1.3 78,335 - -0.0 78,335 - +0.2 78,335 - +0.3 78,335 - -0.9 78,335 - -0.9 78,335 - -0.4 78,335 - -0.5 78,373 - -1.4 78,426 + -0.3 78,426 + -0.1 78,426 + -0.6 78,426 + -1.9 78,427 - +0.2 78,427 - +1.8 78,471 + -2.1 78,471 + +0.6 78,565 - DDA3937_RS00340 0.16 -2.0 78,836 + DDA3937_RS00340 0.39 +0.0 78,836 + DDA3937_RS00340 0.39 -0.8 78,837 - DDA3937_RS00340 0.39 -0.0 78,837 - DDA3937_RS00340 0.39 -0.9 78,837 - DDA3937_RS00340 0.39 -1.3 78,878 - DDA3937_RS00340 0.43 -0.5 78,976 + DDA3937_RS00340 0.51 -0.3
Or see this region's nucleotide sequence