Experiment: Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS00260 and DDA3937_RS00265 are separated by 145 nucleotides DDA3937_RS00265 and DDA3937_RS00270 are separated by 12 nucleotides
DDA3937_RS00260: DDA3937_RS00260 - CehA/McbA family metallohydrolase, at 61,676 to 63,106
_RS00260
DDA3937_RS00265: DDA3937_RS00265 - arsenic resistance protein, at 63,252 to 64,259
_RS00265
DDA3937_RS00270: DDA3937_RS00270 - hypothetical protein, at 64,272 to 65,327
_RS00270
Position (kb) 63
64
65 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 62.596 kb on + strand, within DDA3937_RS00260 at 62.645 kb on + strand, within DDA3937_RS00260 at 62.753 kb on + strand, within DDA3937_RS00260 at 62.753 kb on + strand, within DDA3937_RS00260 at 62.754 kb on - strand, within DDA3937_RS00260 at 62.754 kb on - strand, within DDA3937_RS00260 at 62.754 kb on - strand, within DDA3937_RS00260 at 62.754 kb on - strand, within DDA3937_RS00260 at 62.754 kb on - strand, within DDA3937_RS00260 at 62.873 kb on + strand, within DDA3937_RS00260 at 62.873 kb on + strand, within DDA3937_RS00260 at 62.873 kb on + strand, within DDA3937_RS00260 at 63.029 kb on + strand at 63.029 kb on + strand at 63.029 kb on + strand at 63.029 kb on + strand at 63.030 kb on - strand at 63.030 kb on - strand at 63.030 kb on - strand at 63.200 kb on + strand at 63.208 kb on + strand at 63.208 kb on + strand at 63.209 kb on - strand at 63.209 kb on - strand at 63.209 kb on - strand at 63.209 kb on - strand at 63.265 kb on + strand at 63.265 kb on + strand at 63.265 kb on + strand at 63.265 kb on + strand at 63.266 kb on - strand at 63.266 kb on - strand at 63.268 kb on + strand at 63.268 kb on + strand at 63.268 kb on + strand at 63.312 kb on + strand at 63.313 kb on - strand at 63.417 kb on - strand, within DDA3937_RS00265 at 63.473 kb on + strand, within DDA3937_RS00265 at 63.473 kb on + strand, within DDA3937_RS00265 at 63.473 kb on + strand, within DDA3937_RS00265 at 63.580 kb on + strand at 63.580 kb on + strand, within DDA3937_RS00265 at 63.580 kb on + strand, within DDA3937_RS00265 at 63.580 kb on + strand, within DDA3937_RS00265 at 63.580 kb on + strand, within DDA3937_RS00265 at 63.580 kb on + strand, within DDA3937_RS00265 at 63.581 kb on - strand, within DDA3937_RS00265 at 63.581 kb on - strand, within DDA3937_RS00265 at 63.581 kb on - strand, within DDA3937_RS00265 at 63.603 kb on + strand, within DDA3937_RS00265 at 63.603 kb on + strand, within DDA3937_RS00265 at 63.603 kb on + strand, within DDA3937_RS00265 at 63.603 kb on + strand, within DDA3937_RS00265 at 63.604 kb on - strand, within DDA3937_RS00265 at 63.604 kb on - strand, within DDA3937_RS00265 at 63.604 kb on - strand, within DDA3937_RS00265 at 63.604 kb on - strand, within DDA3937_RS00265 at 63.646 kb on + strand, within DDA3937_RS00265 at 63.647 kb on - strand, within DDA3937_RS00265 at 63.647 kb on - strand, within DDA3937_RS00265 at 63.668 kb on - strand, within DDA3937_RS00265 at 63.832 kb on - strand at 63.973 kb on - strand, within DDA3937_RS00265 at 63.973 kb on - strand, within DDA3937_RS00265 at 64.024 kb on + strand, within DDA3937_RS00265 at 64.024 kb on + strand, within DDA3937_RS00265 at 64.024 kb on + strand, within DDA3937_RS00265 at 64.024 kb on + strand, within DDA3937_RS00265 at 64.025 kb on - strand, within DDA3937_RS00265 at 64.097 kb on - strand, within DDA3937_RS00265 at 64.165 kb on + strand at 64.166 kb on - strand at 64.166 kb on - strand at 64.166 kb on - strand at 64.188 kb on + strand at 64.188 kb on + strand at 64.188 kb on + strand at 64.189 kb on - strand at 64.189 kb on - strand at 64.189 kb on - strand at 64.189 kb on - strand at 64.189 kb on - strand at 64.189 kb on - strand at 64.190 kb on + strand at 64.190 kb on + strand at 64.191 kb on - strand at 64.191 kb on - strand at 64.191 kb on - strand at 64.191 kb on - strand at 64.191 kb on - strand at 64.191 kb on - strand at 64.192 kb on + strand at 64.192 kb on + strand at 64.192 kb on + strand at 64.192 kb on + strand at 64.192 kb on + strand at 64.192 kb on + strand at 64.192 kb on + strand at 64.192 kb on + strand at 64.192 kb on + strand at 64.193 kb on - strand at 64.193 kb on - strand at 64.193 kb on - strand at 64.193 kb on - strand at 64.193 kb on - strand at 64.193 kb on - strand at 64.193 kb on - strand at 64.193 kb on - strand at 64.193 kb on - strand at 64.193 kb on - strand at 64.193 kb on - strand at 64.193 kb on - strand at 64.193 kb on - strand at 64.193 kb on - strand at 64.193 kb on - strand at 64.193 kb on - strand at 64.193 kb on - strand at 64.193 kb on - strand at 64.193 kb on - strand at 64.193 kb on - strand at 64.193 kb on - strand at 64.257 kb on + strand at 64.428 kb on - strand, within DDA3937_RS00270 at 64.463 kb on + strand, within DDA3937_RS00270 at 64.541 kb on + strand, within DDA3937_RS00270 at 64.542 kb on - strand, within DDA3937_RS00270 at 64.637 kb on + strand, within DDA3937_RS00270 at 64.638 kb on - strand, within DDA3937_RS00270 at 64.638 kb on - strand, within DDA3937_RS00270 at 64.764 kb on + strand, within DDA3937_RS00270 at 64.765 kb on - strand, within DDA3937_RS00270 at 64.765 kb on - strand, within DDA3937_RS00270 at 64.765 kb on - strand, within DDA3937_RS00270 at 64.786 kb on - strand, within DDA3937_RS00270 at 64.803 kb on - strand at 64.966 kb on - strand, within DDA3937_RS00270 at 64.986 kb on + strand, within DDA3937_RS00270 at 64.986 kb on + strand, within DDA3937_RS00270 at 64.986 kb on + strand, within DDA3937_RS00270 at 64.986 kb on + strand, within DDA3937_RS00270 at 64.986 kb on + strand, within DDA3937_RS00270 at 64.987 kb on - strand, within DDA3937_RS00270 at 65.008 kb on + strand, within DDA3937_RS00270 at 65.019 kb on + strand, within DDA3937_RS00270 at 65.019 kb on + strand, within DDA3937_RS00270 at 65.020 kb on - strand, within DDA3937_RS00270 at 65.058 kb on + strand, within DDA3937_RS00270 at 65.058 kb on + strand, within DDA3937_RS00270 at 65.122 kb on - strand, within DDA3937_RS00270 at 65.214 kb on - strand, within DDA3937_RS00270 at 65.214 kb on - strand, within DDA3937_RS00270
Per-strain Table
Position Strand Gene LocusTag Fraction Atlantic remove 62,596 + DDA3937_RS00260 0.64 +0.6 62,645 + DDA3937_RS00260 0.68 -1.6 62,753 + DDA3937_RS00260 0.75 -2.1 62,753 + DDA3937_RS00260 0.75 +0.8 62,754 - DDA3937_RS00260 0.75 -0.3 62,754 - DDA3937_RS00260 0.75 -1.3 62,754 - DDA3937_RS00260 0.75 -1.4 62,754 - DDA3937_RS00260 0.75 -0.8 62,754 - DDA3937_RS00260 0.75 +0.3 62,873 + DDA3937_RS00260 0.84 -0.1 62,873 + DDA3937_RS00260 0.84 -2.5 62,873 + DDA3937_RS00260 0.84 +0.5 63,029 + -0.8 63,029 + -1.3 63,029 + +0.2 63,029 + -1.1 63,030 - -0.4 63,030 - -1.3 63,030 - +0.2 63,200 + -0.6 63,208 + +3.2 63,208 + -0.4 63,209 - -2.6 63,209 - -0.8 63,209 - -0.4 63,209 - -1.1 63,265 + -1.4 63,265 + -0.1 63,265 + +0.1 63,265 + -0.7 63,266 - -1.4 63,266 - -0.8 63,268 + -1.0 63,268 + +0.3 63,268 + +0.9 63,312 + -0.8 63,313 - +0.0 63,417 - DDA3937_RS00265 0.16 -0.7 63,473 + DDA3937_RS00265 0.22 -0.6 63,473 + DDA3937_RS00265 0.22 -0.1 63,473 + DDA3937_RS00265 0.22 +0.1 63,580 + +0.3 63,580 + DDA3937_RS00265 0.33 +0.8 63,580 + DDA3937_RS00265 0.33 -3.0 63,580 + DDA3937_RS00265 0.33 -1.3 63,580 + DDA3937_RS00265 0.33 -0.6 63,580 + DDA3937_RS00265 0.33 -2.0 63,581 - DDA3937_RS00265 0.33 -0.1 63,581 - DDA3937_RS00265 0.33 -0.6 63,581 - DDA3937_RS00265 0.33 -0.9 63,603 + DDA3937_RS00265 0.35 -2.2 63,603 + DDA3937_RS00265 0.35 +0.3 63,603 + DDA3937_RS00265 0.35 +2.0 63,603 + DDA3937_RS00265 0.35 -0.4 63,604 - DDA3937_RS00265 0.35 -0.8 63,604 - DDA3937_RS00265 0.35 -1.5 63,604 - DDA3937_RS00265 0.35 -0.0 63,604 - DDA3937_RS00265 0.35 -1.7 63,646 + DDA3937_RS00265 0.39 -1.1 63,647 - DDA3937_RS00265 0.39 -0.4 63,647 - DDA3937_RS00265 0.39 -0.1 63,668 - DDA3937_RS00265 0.41 -2.4 63,832 - +0.9 63,973 - DDA3937_RS00265 0.72 -0.0 63,973 - DDA3937_RS00265 0.72 -1.3 64,024 + DDA3937_RS00265 0.77 +0.1 64,024 + DDA3937_RS00265 0.77 -0.9 64,024 + DDA3937_RS00265 0.77 -1.0 64,024 + DDA3937_RS00265 0.77 -0.5 64,025 - DDA3937_RS00265 0.77 -0.6 64,097 - DDA3937_RS00265 0.84 -0.2 64,165 + +0.5 64,166 - -0.5 64,166 - +0.1 64,166 - +0.9 64,188 + -0.1 64,188 + -2.1 64,188 + -1.1 64,189 - -2.4 64,189 - -0.4 64,189 - -0.9 64,189 - -0.6 64,189 - -0.1 64,189 - +0.1 64,190 + -0.9 64,190 + +0.3 64,191 - +0.0 64,191 - +2.7 64,191 - +2.3 64,191 - -0.1 64,191 - -1.4 64,191 - +0.9 64,192 + -1.1 64,192 + +0.5 64,192 + -1.1 64,192 + -0.7 64,192 + -0.7 64,192 + -1.9 64,192 + +0.9 64,192 + +0.0 64,192 + -0.2 64,193 - -1.7 64,193 - -1.4 64,193 - -2.1 64,193 - +0.6 64,193 - -1.0 64,193 - +0.7 64,193 - -1.1 64,193 - -0.7 64,193 - -0.7 64,193 - +1.5 64,193 - -1.1 64,193 - -0.8 64,193 - -0.3 64,193 - -1.1 64,193 - -2.4 64,193 - -0.7 64,193 - -0.9 64,193 - +1.0 64,193 - +1.8 64,193 - -0.9 64,193 - -1.4 64,257 + +0.1 64,428 - DDA3937_RS00270 0.15 -1.8 64,463 + DDA3937_RS00270 0.18 -1.4 64,541 + DDA3937_RS00270 0.25 +0.7 64,542 - DDA3937_RS00270 0.26 -2.8 64,637 + DDA3937_RS00270 0.35 -0.2 64,638 - DDA3937_RS00270 0.35 +1.6 64,638 - DDA3937_RS00270 0.35 -0.7 64,764 + DDA3937_RS00270 0.47 +0.2 64,765 - DDA3937_RS00270 0.47 -0.5 64,765 - DDA3937_RS00270 0.47 -0.2 64,765 - DDA3937_RS00270 0.47 +1.0 64,786 - DDA3937_RS00270 0.49 -2.9 64,803 - +0.3 64,966 - DDA3937_RS00270 0.66 +0.3 64,986 + DDA3937_RS00270 0.68 -1.7 64,986 + DDA3937_RS00270 0.68 -0.2 64,986 + DDA3937_RS00270 0.68 +1.6 64,986 + DDA3937_RS00270 0.68 -2.1 64,986 + DDA3937_RS00270 0.68 +0.5 64,987 - DDA3937_RS00270 0.68 +0.1 65,008 + DDA3937_RS00270 0.70 -2.3 65,019 + DDA3937_RS00270 0.71 -0.2 65,019 + DDA3937_RS00270 0.71 -0.7 65,020 - DDA3937_RS00270 0.71 -0.7 65,058 + DDA3937_RS00270 0.74 -1.5 65,058 + DDA3937_RS00270 0.74 +0.1 65,122 - DDA3937_RS00270 0.80 -1.8 65,214 - DDA3937_RS00270 0.89 -1.6 65,214 - DDA3937_RS00270 0.89 -0.7
Or see this region's nucleotide sequence